RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 NISCHQ9Y2I1 1504 aa24.55■■□□□ 1.52
VEGFA-215ENST00000497139 HRCP23327 699 aa22.04■■□□□ 1.12
VEGFA-215ENST00000497139 PELP1Q8IZL8 1130 aaKnown RBP21.85■■□□□ 1.09
VEGFA-215ENST00000497139 PCGF6Q9BYE7 350 aa21.25■□□□□ 0.99
VEGFA-215ENST00000497139 PPARGC1BQ86YN6 1023 aaKnown RBP21.2■□□□□ 0.98
VEGFA-215ENST00000497139 MYO15BQ96JP2 1530 aa21.2■□□□□ 0.98
VEGFA-215ENST00000497139 MYT1Q01538 1121 aa21.19■□□□□ 0.98
VEGFA-215ENST00000497139 DCAF1Q9Y4B6 1507 aa21.16■□□□□ 0.98
VEGFA-215ENST00000497139 SUPT5HO00267 1087 aaKnown RBP21.07■□□□□ 0.96
VEGFA-215ENST00000497139 CHIC1Q5VXU3 224 aa21.06■□□□□ 0.96
VEGFA-215ENST00000497139 CCDC180Q9P1Z9 1646 aa21.05■□□□□ 0.96
VEGFA-215ENST00000497139 SHROOM4Q9ULL8 1493 aa21.04■□□□□ 0.96
VEGFA-215ENST00000497139 ZEB1P37275 1124 aaPredicted RBP20.87■□□□□ 0.93
VEGFA-215ENST00000497139 SCAF1Q9H7N4 1312 aaKnown RBP20.81■□□□□ 0.92
VEGFA-215ENST00000497139 TRIM26Q12899 539 aaPredicted RBP20.79■□□□□ 0.92
VEGFA-215ENST00000497139 ZCCHC6Q5VYS8 1495 aaKnown RBP20.77■□□□□ 0.92
VEGFA-215ENST00000497139 ACIN1Q9UKV3 1341 aaKnown RBP20.37■□□□□ 0.85
VEGFA-215ENST00000497139 LOC105371045A0A1W2PR82 267 aa20.34■□□□□ 0.85
VEGFA-215ENST00000497139 CENPBP07199 599 aaPredicted RBP20.18■□□□□ 0.82
VEGFA-215ENST00000497139 NEUROD1Q13562 356 aa20.15■□□□□ 0.82
VEGFA-215ENST00000497139 GTF3C3Q9Y5Q9 886 aa20.08■□□□□ 0.8
VEGFA-215ENST00000497139 DCAF8L2P0C7V8 631 aa20.07■□□□□ 0.8
VEGFA-215ENST00000497139 TTBK1Q5TCY1 1321 aaPredicted RBP20.01■□□□□ 0.79
VEGFA-215ENST00000497139 DIEXFQ68CQ4 756 aaKnown RBP19.86■□□□□ 0.77
VEGFA-215ENST00000497139 ABCC9O60706 1549 aa19.73■□□□□ 0.75
VEGFA-215ENST00000497139 CCER1Q8TC90 406 aaPredicted RBP19.7■□□□□ 0.74
VEGFA-215ENST00000497139 TRIM41Q8WV44 630 aa19.67■□□□□ 0.74
VEGFA-215ENST00000497139 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.6■□□□□ 0.73
VEGFA-215ENST00000497139 CLSPNQ9HAW4 1339 aa19.55■□□□□ 0.72
VEGFA-215ENST00000497139 ZNF316A6NFI3 1004 aaPredicted RBP19.51■□□□□ 0.71
VEGFA-215ENST00000497139 SCRIBQ14160 1630 aa19.51■□□□□ 0.71
VEGFA-215ENST00000497139 RB1CC1Q8TDY2 1594 aa19.5■□□□□ 0.71
VEGFA-215ENST00000497139 RSF1Q96T23 1441 aaPredicted RBP19.46■□□□□ 0.71
VEGFA-215ENST00000497139 NACADO15069 1562 aa19.46■□□□□ 0.71
VEGFA-215ENST00000497139 WRNQ14191 1432 aaPredicted RBP eCLIP19.4■□□□□ 0.79e-10■□□□□ 8.8
VEGFA-215ENST00000497139 FAM9AQ8IZU1 332 aaPredicted RBP19.39■□□□□ 0.69
VEGFA-215ENST00000497139 ANP32EQ9BTT0 268 aa19.35■□□□□ 0.69
VEGFA-215ENST00000497139 BCL11AQ9H165 835 aa19.34■□□□□ 0.69
VEGFA-215ENST00000497139 YTHDC1Q96MU7 727 aaKnown RBP19.3■□□□□ 0.68
VEGFA-215ENST00000497139 MIER1Q8N108 512 aa19.25■□□□□ 0.67
VEGFA-215ENST00000497139 SUPT16HQ9Y5B9 1047 aaKnown RBP19.16■□□□□ 0.66
VEGFA-215ENST00000497139 TSHZ2Q9NRE2 1034 aa19.11■□□□□ 0.65
VEGFA-215ENST00000497139 EHMT2Q96KQ7 1210 aa19.08■□□□□ 0.65
VEGFA-215ENST00000497139 CECR2Q9BXF3 1484 aa19.05■□□□□ 0.64
VEGFA-215ENST00000497139 CEP162Q5TB80 1403 aa19.04■□□□□ 0.64
VEGFA-215ENST00000497139 EIF4G1Q04637 1599 aaKnown RBP19.02■□□□□ 0.64
VEGFA-215ENST00000497139 MROH2BQ7Z745 1585 aa19.01■□□□□ 0.63
VEGFA-215ENST00000497139 TNIKQ9UKE5 1360 aa19■□□□□ 0.63
VEGFA-215ENST00000497139 CSRNP3Q8WYN3 585 aa18.97■□□□□ 0.63
VEGFA-215ENST00000497139 EEA1Q15075 1411 aa18.9■□□□□ 0.62
VEGFA-215ENST00000497139 WIZO95785 1651 aa18.89■□□□□ 0.62
VEGFA-215ENST00000497139 BAZ1AQ9NRL2 1556 aaPredicted RBP18.89■□□□□ 0.61
VEGFA-215ENST00000497139 UNC13AQ9UPW8 1703 aa18.81■□□□□ 0.6
VEGFA-215ENST00000497139 SMARCA4P51532 1647 aa18.73■□□□□ 0.59
VEGFA-215ENST00000497139 GOLGA3Q08378 1498 aa18.73■□□□□ 0.59
VEGFA-215ENST00000497139 CCDC88BA6NC98 1476 aa18.7■□□□□ 0.58
VEGFA-215ENST00000497139 TOP2AP11388 1531 aaKnown RBP18.69■□□□□ 0.58
VEGFA-215ENST00000497139 ABCC8Q09428 1581 aa18.67■□□□□ 0.58
VEGFA-215ENST00000497139 MYT1LQ9UL68 1186 aa18.66■□□□□ 0.58
VEGFA-215ENST00000497139 HNRNPUL2Q1KMD3 747 aaKnown RBP18.65■□□□□ 0.58
VEGFA-215ENST00000497139 RBM19Q9Y4C8 960 aaKnown RBP18.65■□□□□ 0.58
VEGFA-215ENST00000497139 PRKCSHP14314 528 aaPredicted RBP18.64■□□□□ 0.57
VEGFA-215ENST00000497139 SOGA1O94964 1423 aa18.61■□□□□ 0.57
VEGFA-215ENST00000497139 ERICH6Q7L0X2 663 aa18.6■□□□□ 0.57
VEGFA-215ENST00000497139 PABPN1Q86U42 306 aaKnown RBP eCLIP18.6■□□□□ 0.577e-13■□□□□ 11.3
VEGFA-215ENST00000497139 DHX57Q6P158 1386 aaKnown RBP18.58■□□□□ 0.57
VEGFA-215ENST00000497139 VPS8Q8N3P4 1428 aa18.58■□□□□ 0.56
VEGFA-215ENST00000497139 BICRAQ9NZM4 1560 aa18.58■□□□□ 0.56
VEGFA-215ENST00000497139 KIF21BO75037 1637 aa18.57■□□□□ 0.56
VEGFA-215ENST00000497139 UBTFP17480 764 aaKnown RBP18.57■□□□□ 0.56
VEGFA-215ENST00000497139 SMARCA2P51531 1590 aa18.55■□□□□ 0.56
VEGFA-215ENST00000497139 CEP164Q9UPV0 1460 aa18.54■□□□□ 0.56
VEGFA-215ENST00000497139 FANCIQ9NVI1 1328 aa18.54■□□□□ 0.56
VEGFA-215ENST00000497139 FKBP8Q14318 412 aa18.53■□□□□ 0.56
VEGFA-215ENST00000497139 NEFLP07196 543 aa18.52■□□□□ 0.56
VEGFA-215ENST00000497139 CLIP1P30622 1438 aa18.5■□□□□ 0.55
VEGFA-215ENST00000497139 BAZ1BQ9UIG0 1483 aaKnown RBP18.49■□□□□ 0.55
VEGFA-215ENST00000497139 PEG3Q9GZU2 1588 aa18.46■□□□□ 0.55
VEGFA-215ENST00000497139 APLP2Q06481 763 aa18.45■□□□□ 0.54
VEGFA-215ENST00000497139 BCANQ96GW7 911 aa18.45■□□□□ 0.54
VEGFA-215ENST00000497139 CUX2O14529 1486 aa18.45■□□□□ 0.54
VEGFA-215ENST00000497139 RUSC2Q8N2Y8 1516 aa18.44■□□□□ 0.54
VEGFA-215ENST00000497139 MSH5O43196 834 aa18.43■□□□□ 0.54
VEGFA-215ENST00000497139 CCER2I3L3R5 266 aa18.33■□□□□ 0.53
VEGFA-215ENST00000497139 RRBP1Q9P2E9 1410 aaKnown RBP18.31■□□□□ 0.52
VEGFA-215ENST00000497139 KCNH8Q96L42 1107 aa18.31■□□□□ 0.52
VEGFA-215ENST00000497139 CDK11AQ9UQ88 783 aaPredicted RBP18.27■□□□□ 0.51
VEGFA-215ENST00000497139 ERICH6BQ5W0A0 696 aa18.26■□□□□ 0.51
VEGFA-215ENST00000497139 ATAD2BQ9ULI0 1458 aa18.25■□□□□ 0.51
VEGFA-215ENST00000497139 DEKP35659 375 aaKnown RBP18.23■□□□□ 0.51
VEGFA-215ENST00000497139 ITGAEP38570 1179 aa18.2■□□□□ 0.5
VEGFA-215ENST00000497139 PPP1R15AO75807 674 aaPredicted RBP18.18■□□□□ 0.5
VEGFA-215ENST00000497139 MAPKBP1O60336 1514 aa18.17■□□□□ 0.5
VEGFA-215ENST00000497139 TIMELESSQ9UNS1 1208 aa18.16■□□□□ 0.5
VEGFA-215ENST00000497139 RAPGEF2Q9Y4G8 1499 aa18.15■□□□□ 0.5
VEGFA-215ENST00000497139 SYNJ1O43426 1573 aa18.14■□□□□ 0.49
VEGFA-215ENST00000497139 ERICH3Q5RHP9 1530 aa18.12■□□□□ 0.49
VEGFA-215ENST00000497139 ANP32CO43423 234 aa18.12■□□□□ 0.49
VEGFA-215ENST00000497139 DDX10Q13206 875 aaKnown RBP18.12■□□□□ 0.49
VEGFA-215ENST00000497139 CCNB3Q8WWL7 1395 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms