RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 RNF17Q9BXT8 1623 aaKnown RBP9.69□□□□□ -0.86
USP39-219ENST00000496047 ZC3H13Q5T200 1668 aaKnown RBP9.68□□□□□ -0.86
USP39-219ENST00000496047 PRDM15P57071 1507 aaPredicted RBP9.68□□□□□ -0.86
USP39-219ENST00000496047 TRAPPC8Q9Y2L5 1435 aa9.68□□□□□ -0.86
USP39-219ENST00000496047 ANP32CO43423 234 aa9.68□□□□□ -0.86
USP39-219ENST00000496047 KLHL34Q8N239 644 aa9.68□□□□□ -0.86
USP39-219ENST00000496047 L3MBTL2Q969R5 705 aa9.68□□□□□ -0.86
USP39-219ENST00000496047 MYT1LQ9UL68 1186 aa9.68□□□□□ -0.86
USP39-219ENST00000496047 NEO1Q92859 1461 aa9.67□□□□□ -0.86
USP39-219ENST00000496047 GALR2O43603 387 aaPredicted RBP9.67□□□□□ -0.86
USP39-219ENST00000496047 PAK3O75914 559 aaPredicted RBP9.67□□□□□ -0.86
USP39-219ENST00000496047 RICTORQ6R327 1708 aa9.67□□□□□ -0.86
USP39-219ENST00000496047 GLI2P10070 1586 aa9.67□□□□□ -0.86
USP39-219ENST00000496047 TRPM2O94759 1503 aa9.66□□□□□ -0.86
USP39-219ENST00000496047 UHRF1BP1Q6BDS2 1440 aa9.66□□□□□ -0.86
USP39-219ENST00000496047 CD109Q6YHK3 1445 aa9.66□□□□□ -0.86
USP39-219ENST00000496047 SCAPERQ9BY12 1400 aa9.66□□□□□ -0.86
USP39-219ENST00000496047 ZBTB47Q9UFB7 747 aaPredicted RBP9.66□□□□□ -0.86
USP39-219ENST00000496047 TSPOAP1O95153 1857 aa9.66□□□□□ -0.86
USP39-219ENST00000496047 ATP10AO60312 1499 aa9.66□□□□□ -0.86
USP39-219ENST00000496047 KIAA1210Q9ULL0 1709 aa9.65□□□□□ -0.86
USP39-219ENST00000496047 CFAP65Q6ZU64 1925 aaKnown RBP9.65□□□□□ -0.86
USP39-219ENST00000496047 YTHDC1Q96MU7 727 aaKnown RBP9.65□□□□□ -0.86
USP39-219ENST00000496047 SPATA31D1Q6ZQQ2 1576 aa9.64□□□□□ -0.87
USP39-219ENST00000496047 VWDEQ8N2E2 1590 aa9.64□□□□□ -0.87
USP39-219ENST00000496047 NEURL4Q96JN8 1562 aa9.64□□□□□ -0.87
USP39-219ENST00000496047 HSPA5P11021 654 aaKnown RBP9.64□□□□□ -0.87
USP39-219ENST00000496047 DDX10Q13206 875 aaKnown RBP9.64□□□□□ -0.87
USP39-219ENST00000496047 IFNLR1Q8IU57 520 aaPredicted RBP9.64□□□□□ -0.87
USP39-219ENST00000496047 POGZQ7Z3K3 1410 aa9.64□□□□□ -0.87
USP39-219ENST00000496047 CNTLNQ9NXG0 1405 aa9.64□□□□□ -0.87
USP39-219ENST00000496047 IFT172Q9UG01 1749 aa9.63□□□□□ -0.87
USP39-219ENST00000496047 ABCA6Q8N139 1617 aa9.63□□□□□ -0.87
USP39-219ENST00000496047 EFCAB6Q5THR3 1501 aa9.62□□□□□ -0.87
USP39-219ENST00000496047 A2MP01023 1474 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 MLH3Q9UHC1 1453 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 CLTCL1P53675 1640 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 CAMSAP1Q5T5Y3 1602 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 MROH1Q8NDA8 1641 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 CCER2I3L3R5 266 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 SPOCK2Q92563 424 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 PHF12Q96QT6 1004 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 DIP2BQ9P265 1576 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 DHX29Q7Z478 1369 aaKnown RBP9.61□□□□□ -0.87
USP39-219ENST00000496047 USP47Q96K76 1375 aa9.61□□□□□ -0.87
USP39-219ENST00000496047 PPRC1Q5VV67 1664 aaKnown RBP9.61□□□□□ -0.87
USP39-219ENST00000496047 ARID4BQ4LE39 1312 aaPredicted RBP9.6□□□□□ -0.87
USP39-219ENST00000496047 ZNF326Q5BKZ1 582 aaKnown RBP9.6□□□□□ -0.87
USP39-219ENST00000496047 CERKQ8TCT0 537 aa9.6□□□□□ -0.87
USP39-219ENST00000496047 LMTK2Q8IWU2 1503 aa9.6□□□□□ -0.87
USP39-219ENST00000496047 ROCK2O75116 1388 aaKnown RBP9.6□□□□□ -0.87
USP39-219ENST00000496047 MADDQ8WXG6 1647 aa9.6□□□□□ -0.87
USP39-219ENST00000496047 IQGAP1P46940 1657 aa9.59□□□□□ -0.87
USP39-219ENST00000496047 STAC3Q96MF2 364 aa9.59□□□□□ -0.87
USP39-219ENST00000496047 CCDC7Q96M83 1385 aa9.59□□□□□ -0.87
USP39-219ENST00000496047 DIP2CQ9Y2E4 1556 aa9.58□□□□□ -0.88
USP39-219ENST00000496047 OTUD5Q96G74 571 aa9.58□□□□□ -0.88
USP39-219ENST00000496047 HIRIP3Q9BW71 556 aaPredicted RBP9.58□□□□□ -0.88
USP39-219ENST00000496047 PPLO60437 1756 aa9.58□□□□□ -0.88
USP39-219ENST00000496047 PRAG1Q86YV5 1406 aa9.57□□□□□ -0.88
USP39-219ENST00000496047 NBPF8Q3BBV2 869 aa9.57□□□□□ -0.88
USP39-219ENST00000496047 AFAP1Q8N556 730 aa9.57□□□□□ -0.88
USP39-219ENST00000496047 DCAF11Q8TEB1 546 aa9.57□□□□□ -0.88
USP39-219ENST00000496047 CARD11Q9BXL7 1154 aa9.57□□□□□ -0.88
USP39-219ENST00000496047 MROH2AA6NES4 1674 aa9.57□□□□□ -0.88
USP39-219ENST00000496047 SPATA31E1Q6ZUB1 1445 aa9.56□□□□□ -0.88
USP39-219ENST00000496047 ZMYM4Q5VZL5 1548 aa9.56□□□□□ -0.88
USP39-219ENST00000496047 KIF3BO15066 747 aa9.55□□□□□ -0.88
USP39-219ENST00000496047 PTPRTO14522 1441 aa9.55□□□□□ -0.88
USP39-219ENST00000496047 WASHC2AQ641Q2 1341 aa9.55□□□□□ -0.88
USP39-219ENST00000496047 POTEB2H3BUK9 544 aa9.54□□□□□ -0.88
USP39-219ENST00000496047 KDM2AQ9Y2K7 1162 aa9.54□□□□□ -0.88
USP39-219ENST00000496047 KDM5AP29375 1690 aaKnown RBP9.54□□□□□ -0.88
USP39-219ENST00000496047 FRMPD1Q5SYB0 1578 aa9.54□□□□□ -0.88
USP39-219ENST00000496047 PLA2R1Q13018 1463 aa9.53□□□□□ -0.88
USP39-219ENST00000496047 REREQ9P2R6 1566 aa9.53□□□□□ -0.88
USP39-219ENST00000496047 MYOM2P54296 1465 aa9.53□□□□□ -0.88
USP39-219ENST00000496047 EIF3AQ14152 1382 aaKnown RBP9.52□□□□□ -0.88
USP39-219ENST00000496047 GPRASP1Q5JY77 1395 aa9.52□□□□□ -0.88
USP39-219ENST00000496047 PREX1Q8TCU6 1659 aa9.52□□□□□ -0.89
USP39-219ENST00000496047 MYO5BQ9ULV0 1848 aa9.52□□□□□ -0.89
USP39-219ENST00000496047 ABCC3O15438 1527 aa9.51□□□□□ -0.89
USP39-219ENST00000496047 ADGRB3O60242 1522 aa9.51□□□□□ -0.89
USP39-219ENST00000496047 KIF7Q2M1P5 1343 aa9.51□□□□□ -0.89
USP39-219ENST00000496047 PIK3C2BO00750 1634 aa9.5□□□□□ -0.89
USP39-219ENST00000496047 MYO3AQ8NEV4 1616 aa9.5□□□□□ -0.89
USP39-219ENST00000496047 SLC24A1O60721 1099 aa9.5□□□□□ -0.89
USP39-219ENST00000496047 RGL3Q3MIN7 710 aa9.5□□□□□ -0.89
USP39-219ENST00000496047 PELP1Q8IZL8 1130 aaKnown RBP9.5□□□□□ -0.89
USP39-219ENST00000496047 GTF3C3Q9Y5Q9 886 aa9.5□□□□□ -0.89
USP39-219ENST00000496047 KTN1Q86UP2 1357 aaKnown RBP9.5□□□□□ -0.89
USP39-219ENST00000496047 COL17A1Q9UMD9 1497 aaPredicted RBP9.49□□□□□ -0.89
USP39-219ENST00000496047 SIGLEC1Q9BZZ2 1709 aa9.49□□□□□ -0.89
USP39-219ENST00000496047 SETBP1Q9Y6X0 1596 aa9.49□□□□□ -0.89
USP39-219ENST00000496047 POTEMA6NI47 508 aa9.48□□□□□ -0.89
USP39-219ENST00000496047 POLR3GLQ9BT43 218 aa9.48□□□□□ -0.89
USP39-219ENST00000496047 SYNMO15061 1565 aa9.48□□□□□ -0.89
USP39-219ENST00000496047 CLTCQ00610 1675 aaKnown RBP9.48□□□□□ -0.89
USP39-219ENST00000496047 SCAF11Q99590 1463 aaKnown RBP9.47□□□□□ -0.89
USP39-219ENST00000496047 ARHGEF40Q8TER5 1519 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms