RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 AEBP2Q6ZN18 517 aaPredicted RBP19.4■□□□□ 0.7
USP39-219ENST00000496047 CHIC1Q5VXU3 224 aa18.18■□□□□ 0.5
USP39-219ENST00000496047 SENP3Q9H4L4 574 aaPredicted RBP16.63■□□□□ 0.25
USP39-219ENST00000496047 PHF23Q9BUL5 403 aaPredicted RBP16.38■□□□□ 0.21
USP39-219ENST00000496047 FOXD1Q16676 465 aa15.53■□□□□ 0.08
USP39-219ENST00000496047 NISCHQ9Y2I1 1504 aa15.17■□□□□ 0.02
USP39-219ENST00000496047 POTEDQ86YR6 584 aa14.81□□□□□ -0.04
USP39-219ENST00000496047 MSH5O43196 834 aa14.66□□□□□ -0.06
USP39-219ENST00000496047 PIAS4Q8N2W9 510 aaPredicted RBP14.49□□□□□ -0.09
USP39-219ENST00000496047 PLPPR3Q6T4P5 718 aa14.4□□□□□ -0.1
USP39-219ENST00000496047 PPP6R1Q9UPN7 881 aa14.28□□□□□ -0.12
USP39-219ENST00000496047 ADRA2BP18089 450 aa14.26□□□□□ -0.13
USP39-219ENST00000496047 CCDC180Q9P1Z9 1646 aa13.37□□□□□ -0.27
USP39-219ENST00000496047 MAPK8IP2Q13387 824 aaPredicted RBP13.19□□□□□ -0.3
USP39-219ENST00000496047 DMRT2Q9Y5R5 561 aa13.12□□□□□ -0.31
USP39-219ENST00000496047 SCAF1Q9H7N4 1312 aaKnown RBP13.08□□□□□ -0.32
USP39-219ENST00000496047 CACNB1Q02641 598 aaPredicted RBP12.82□□□□□ -0.36
USP39-219ENST00000496047 ZCCHC6Q5VYS8 1495 aaKnown RBP12.79□□□□□ -0.36
USP39-219ENST00000496047 DCAF8L1A6NGE4 600 aa12.75□□□□□ -0.37
USP39-219ENST00000496047 DNAJC5BQ9UF47 199 aa12.72□□□□□ -0.37
USP39-219ENST00000496047 ABCC9O60706 1549 aa12.62□□□□□ -0.39
USP39-219ENST00000496047 DCAF1Q9Y4B6 1507 aa12.61□□□□□ -0.39
USP39-219ENST00000496047 PPP4R3CPQ6ZMV5 832 aa12.58□□□□□ -0.4
USP39-219ENST00000496047 HOXD11P31277 338 aaPredicted RBP12.5□□□□□ -0.41
USP39-219ENST00000496047 RNF39Q9H2S5 420 aa12.46□□□□□ -0.41
USP39-219ENST00000496047 DNAJC5Q9H3Z4 198 aa12.45□□□□□ -0.42
USP39-219ENST00000496047 CNKSR2Q8WXI2 1034 aa12.41□□□□□ -0.42
USP39-219ENST00000496047 MYO15BQ96JP2 1530 aa12.4□□□□□ -0.42
USP39-219ENST00000496047 SHROOM4Q9ULL8 1493 aa12.38□□□□□ -0.43
USP39-219ENST00000496047 DCAF8L2P0C7V8 631 aa12.37□□□□□ -0.43
USP39-219ENST00000496047 RNF216Q9NWF9 866 aaPredicted RBP12.35□□□□□ -0.43
USP39-219ENST00000496047 NACADO15069 1562 aa12.3□□□□□ -0.44
USP39-219ENST00000496047 C1QBPQ07021 282 aaKnown RBP12.27□□□□□ -0.45
USP39-219ENST00000496047 KCNA4P22459 653 aa12.26□□□□□ -0.45
USP39-219ENST00000496047 NCBP3Q53F19 620 aaKnown RBP12.21□□□□□ -0.45
USP39-219ENST00000496047 RB1CC1Q8TDY2 1594 aa12.19□□□□□ -0.46
USP39-219ENST00000496047 SCRIBQ14160 1630 aa12.18□□□□□ -0.46
USP39-219ENST00000496047 UNC13AQ9UPW8 1703 aa12.03□□□□□ -0.48
USP39-219ENST00000496047 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.02□□□□□ -0.49
USP39-219ENST00000496047 SUPT5HO00267 1087 aaKnown RBP12□□□□□ -0.49
USP39-219ENST00000496047 NPM3O75607 178 aaKnown RBP11.84□□□□□ -0.51
USP39-219ENST00000496047 SLC4A1APQ9BWU0 796 aaKnown RBP11.83□□□□□ -0.52
USP39-219ENST00000496047 BAZ1AQ9NRL2 1556 aaPredicted RBP11.79□□□□□ -0.52
USP39-219ENST00000496047 EHMT2Q96KQ7 1210 aa11.75□□□□□ -0.53
USP39-219ENST00000496047 RSF1Q96T23 1441 aaPredicted RBP11.74□□□□□ -0.53
USP39-219ENST00000496047 SMARCA4P51532 1647 aa11.71□□□□□ -0.54
USP39-219ENST00000496047 WIZO95785 1651 aa11.68□□□□□ -0.54
USP39-219ENST00000496047 MROH2BQ7Z745 1585 aa11.67□□□□□ -0.54
USP39-219ENST00000496047 BICRAQ9NZM4 1560 aa11.67□□□□□ -0.54
USP39-219ENST00000496047 CAPN15O75808 1086 aa11.66□□□□□ -0.54
USP39-219ENST00000496047 U3KPZ7 1027 aaPredicted RBP11.66□□□□□ -0.54
USP39-219ENST00000496047 CECR2Q9BXF3 1484 aa11.65□□□□□ -0.54
USP39-219ENST00000496047 PABPN1Q86U42 306 aaKnown RBP eCLIP11.62□□□□□ -0.55
USP39-219ENST00000496047 SPINK5Q9NQ38 1064 aaPredicted RBP11.61□□□□□ -0.55
USP39-219ENST00000496047 TOP2AP11388 1531 aaKnown RBP11.59□□□□□ -0.55
USP39-219ENST00000496047 DSG3P32926 999 aa11.58□□□□□ -0.56
USP39-219ENST00000496047 POTEHQ6S545 545 aa11.56□□□□□ -0.56
USP39-219ENST00000496047 PEG3Q9GZU2 1588 aa11.53□□□□□ -0.56
USP39-219ENST00000496047 SMARCA2P51531 1590 aa11.5□□□□□ -0.57
USP39-219ENST00000496047 CSRNP3Q8WYN3 585 aa11.44□□□□□ -0.58
USP39-219ENST00000496047 EIF4G1Q04637 1599 aaKnown RBP11.42□□□□□ -0.58
USP39-219ENST00000496047 TRIM41Q8WV44 630 aa11.42□□□□□ -0.58
USP39-219ENST00000496047 TRHP20396 242 aaPredicted RBP11.41□□□□□ -0.58
USP39-219ENST00000496047 BAZ1BQ9UIG0 1483 aaKnown RBP11.38□□□□□ -0.59
USP39-219ENST00000496047 ABCB7O75027 752 aa11.36□□□□□ -0.59
USP39-219ENST00000496047 APLP2Q06481 763 aa11.36□□□□□ -0.59
USP39-219ENST00000496047 HMGXB3Q12766 1538 aa11.35□□□□□ -0.59
USP39-219ENST00000496047 PRDM2Q13029 1718 aa11.35□□□□□ -0.59
USP39-219ENST00000496047 CCDC88BA6NC98 1476 aa11.35□□□□□ -0.59
USP39-219ENST00000496047 ATAD2BQ9ULI0 1458 aa11.35□□□□□ -0.59
USP39-219ENST00000496047 CUX2O14529 1486 aa11.34□□□□□ -0.59
USP39-219ENST00000496047 SLC4A2P04920 1241 aa11.34□□□□□ -0.59
USP39-219ENST00000496047 CC2D2AQ9P2K1 1620 aa11.33□□□□□ -0.6
USP39-219ENST00000496047 ZNF219Q9P2Y4 722 aaPredicted RBP11.32□□□□□ -0.6
USP39-219ENST00000496047 FOXD4L1Q9NU39 408 aa11.31□□□□□ -0.6
USP39-219ENST00000496047 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.26□□□□□ -0.61
USP39-219ENST00000496047 HNRNPUL2Q1KMD3 747 aaKnown RBP11.26□□□□□ -0.61
USP39-219ENST00000496047 NCAPD3P42695 1498 aa11.22□□□□□ -0.61
USP39-219ENST00000496047 ABCC8Q09428 1581 aa11.21□□□□□ -0.61
USP39-219ENST00000496047 ZBTB22O15209 634 aa11.19□□□□□ -0.62
USP39-219ENST00000496047 SAMD1Q6SPF0 538 aaPredicted RBP11.18□□□□□ -0.62
USP39-219ENST00000496047 EEA1Q15075 1411 aa11.16□□□□□ -0.62
USP39-219ENST00000496047 BIVM-ERCC5R4GMW8 1640 aa11.14□□□□□ -0.63
USP39-219ENST00000496047 WRNQ14191 1432 aaPredicted RBP eCLIP11.13□□□□□ -0.63
USP39-219ENST00000496047 TOP2BQ02880 1626 aa11.1□□□□□ -0.63
USP39-219ENST00000496047 SYNJ1O43426 1573 aa11.09□□□□□ -0.63
USP39-219ENST00000496047 RBM42Q9BTD8 480 aaKnown RBP11.09□□□□□ -0.63
USP39-219ENST00000496047 FAM9AQ8IZU1 332 aaPredicted RBP11.05□□□□□ -0.64
USP39-219ENST00000496047 LOC105371045A0A1W2PR82 267 aa11.04□□□□□ -0.64
USP39-219ENST00000496047 MYCNP04198 464 aaPredicted RBP11.04□□□□□ -0.64
USP39-219ENST00000496047 KIF21BO75037 1637 aa11.03□□□□□ -0.64
USP39-219ENST00000496047 CFTRP13569 1480 aa11.03□□□□□ -0.64
USP39-219ENST00000496047 POLA2Q14181 598 aa11□□□□□ -0.65
USP39-219ENST00000496047 ERCC6Q03468 1493 aa11□□□□□ -0.65
USP39-219ENST00000496047 GOLGA3Q08378 1498 aa10.99□□□□□ -0.65
USP39-219ENST00000496047 CEP164Q9UPV0 1460 aa10.97□□□□□ -0.65
USP39-219ENST00000496047 LAMC3Q9Y6N6 1575 aa10.97□□□□□ -0.65
USP39-219ENST00000496047 CHRDL2Q6WN34 429 aa10.96□□□□□ -0.65
USP39-219ENST00000496047 ATXN8OSP0DMR3 200 aa10.95□□□□□ -0.66
USP39-219ENST00000496047 SOGA1O94964 1423 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms