RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 TSHZ2Q9NRE2 1034 aa9.51□□□□□ -0.89
NPHP3-208ENST00000490993 SMG6Q86US8 1419 aaKnown RBP9.5□□□□□ -0.89
NPHP3-208ENST00000490993 U2AF1L5P0DN76 240 aaPredicted RBP9.5□□□□□ -0.89
NPHP3-208ENST00000490993 U2AF1Q01081 240 aaKnown RBP eCLIP9.5□□□□□ -0.89
NPHP3-208ENST00000490993 FTSJ3Q8IY81 847 aaKnown RBP9.5□□□□□ -0.89
NPHP3-208ENST00000490993 CDC42BPAQ5VT25 1732 aa9.5□□□□□ -0.89
NPHP3-208ENST00000490993 ATP7AQ04656 1500 aa9.5□□□□□ -0.89
NPHP3-208ENST00000490993 RRP1P56182 461 aaKnown RBP9.5□□□□□ -0.89
NPHP3-208ENST00000490993 E9PSI1 815 aa9.49□□□□□ -0.89
NPHP3-208ENST00000490993 PPP2R1AP30153 589 aa9.49□□□□□ -0.89
NPHP3-208ENST00000490993 CROCC2H7BZ55 1655 aa9.49□□□□□ -0.89
NPHP3-208ENST00000490993 TTC37Q6PGP7 1564 aa9.49□□□□□ -0.89
NPHP3-208ENST00000490993 TRHP20396 242 aaPredicted RBP9.49□□□□□ -0.89
NPHP3-208ENST00000490993 RBM19Q9Y4C8 960 aaKnown RBP9.49□□□□□ -0.89
NPHP3-208ENST00000490993 ZCCHC11Q5TAX3 1644 aaKnown RBP9.49□□□□□ -0.89
NPHP3-208ENST00000490993 ARAP3Q8WWN8 1544 aa9.48□□□□□ -0.89
NPHP3-208ENST00000490993 TCERG1O14776 1098 aaKnown RBP9.48□□□□□ -0.89
NPHP3-208ENST00000490993 CFAP74Q9C0B2 1584 aa9.48□□□□□ -0.89
NPHP3-208ENST00000490993 HAP1P54257 671 aaPredicted RBP9.48□□□□□ -0.89
NPHP3-208ENST00000490993 CCDC184Q52MB2 194 aa9.48□□□□□ -0.89
NPHP3-208ENST00000490993 ABCC1P33527 1531 aa9.47□□□□□ -0.89
NPHP3-208ENST00000490993 CCDC146Q8IYE0 955 aa9.47□□□□□ -0.89
NPHP3-208ENST00000490993 FRAT1Q92837 279 aaPredicted RBP9.47□□□□□ -0.89
NPHP3-208ENST00000490993 PLXNC1O60486 1568 aa9.47□□□□□ -0.89
NPHP3-208ENST00000490993 TMEM132EQ6IEE7 984 aa9.46□□□□□ -0.89
NPHP3-208ENST00000490993 MINK1Q8N4C8 1332 aaPredicted RBP9.46□□□□□ -0.9
NPHP3-208ENST00000490993 SPATA31E1Q6ZUB1 1445 aa9.46□□□□□ -0.9
NPHP3-208ENST00000490993 EIF5BO60841 1220 aaKnown RBP9.45□□□□□ -0.9
NPHP3-208ENST00000490993 GPRASP1Q5JY77 1395 aa9.45□□□□□ -0.9
NPHP3-208ENST00000490993 IPO8O15397 1037 aaKnown RBP9.45□□□□□ -0.9
NPHP3-208ENST00000490993 C14orf37Q86TY3 774 aa9.45□□□□□ -0.9
NPHP3-208ENST00000490993 RUNDC1Q96C34 613 aa9.45□□□□□ -0.9
NPHP3-208ENST00000490993 SHROOM2Q13796 1616 aa9.45□□□□□ -0.9
NPHP3-208ENST00000490993 ADAMTS8Q9UP79 889 aa9.44□□□□□ -0.9
NPHP3-208ENST00000490993 DISP3Q9P2K9 1392 aa9.44□□□□□ -0.9
NPHP3-208ENST00000490993 C14orf93Q9H972 538 aaKnown RBP9.44□□□□□ -0.9
NPHP3-208ENST00000490993 CLASP1Q7Z460 1538 aa9.44□□□□□ -0.9
NPHP3-208ENST00000490993 NEO1Q92859 1461 aa9.44□□□□□ -0.9
NPHP3-208ENST00000490993 ADGRF5Q8IZF2 1346 aa9.44□□□□□ -0.9
NPHP3-208ENST00000490993 LMOD3Q0VAK6 560 aa9.44□□□□□ -0.9
NPHP3-208ENST00000490993 NOS1P29475 1434 aa9.43□□□□□ -0.9
NPHP3-208ENST00000490993 APAF1O14727 1248 aa9.43□□□□□ -0.9
NPHP3-208ENST00000490993 ATAD2Q6PL18 1390 aa9.43□□□□□ -0.9
NPHP3-208ENST00000490993 LAS1LQ9Y4W2 734 aaKnown RBP9.43□□□□□ -0.9
NPHP3-208ENST00000490993 ANP32EQ9BTT0 268 aa9.43□□□□□ -0.9
NPHP3-208ENST00000490993 POGZQ7Z3K3 1410 aa9.42□□□□□ -0.9
NPHP3-208ENST00000490993 ERCC6L2Q5T890 1561 aa9.42□□□□□ -0.9
NPHP3-208ENST00000490993 COL17A1Q9UMD9 1497 aaPredicted RBP9.42□□□□□ -0.9
NPHP3-208ENST00000490993 PMFBP1Q8TBY8 1022 aa9.42□□□□□ -0.9
NPHP3-208ENST00000490993 CABP2Q9NPB3 220 aa9.42□□□□□ -0.9
NPHP3-208ENST00000490993 BECN1Q14457 450 aa9.41□□□□□ -0.9
NPHP3-208ENST00000490993 COG3Q96JB2 828 aa9.41□□□□□ -0.9
NPHP3-208ENST00000490993 PARD3Q8TEW0 1356 aa9.41□□□□□ -0.9
NPHP3-208ENST00000490993 UNC13BO14795 1591 aa9.41□□□□□ -0.9
NPHP3-208ENST00000490993 TESK2Q96S53 571 aa9.41□□□□□ -0.9
NPHP3-208ENST00000490993 IQGAP3Q86VI3 1631 aa9.41□□□□□ -0.9
NPHP3-208ENST00000490993 ATP10AO60312 1499 aa9.41□□□□□ -0.9
NPHP3-208ENST00000490993 DIAPH1O60610 1272 aaKnown RBP9.41□□□□□ -0.9
NPHP3-208ENST00000490993 NINLQ9Y2I6 1382 aa9.41□□□□□ -0.9
NPHP3-208ENST00000490993 AAMPQ13685 434 aa9.4□□□□□ -0.9
NPHP3-208ENST00000490993 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.4□□□□□ -0.9
NPHP3-208ENST00000490993 CENPQQ7L2Z9 268 aaPredicted RBP9.4□□□□□ -0.9
NPHP3-208ENST00000490993 PUS7Q96PZ0 661 aaKnown RBP9.4□□□□□ -0.9
NPHP3-208ENST00000490993 PRAM1Q96QH2 718 aa9.4□□□□□ -0.9
NPHP3-208ENST00000490993 RWDD1Q9H446 243 aaPredicted RBP9.4□□□□□ -0.9
NPHP3-208ENST00000490993 KDM5CP41229 1560 aa9.4□□□□□ -0.9
NPHP3-208ENST00000490993 EXOC6Q8TAG9 804 aa9.4□□□□□ -0.91
NPHP3-208ENST00000490993 CDC42BPBQ9Y5S2 1711 aa9.39□□□□□ -0.91
NPHP3-208ENST00000490993 SLC12A5Q9H2X9 1139 aa9.39□□□□□ -0.91
NPHP3-208ENST00000490993 NOP58Q9Y2X3 529 aaKnown RBP9.39□□□□□ -0.91
NPHP3-208ENST00000490993 NSD2O96028 1365 aa9.39□□□□□ -0.91
NPHP3-208ENST00000490993 TRPM2O94759 1503 aa9.39□□□□□ -0.91
NPHP3-208ENST00000490993 IDI1Q13907 227 aa9.39□□□□□ -0.91
NPHP3-208ENST00000490993 RGS3P49796 1198 aa9.38□□□□□ -0.91
NPHP3-208ENST00000490993 NSD3Q9BZ95 1437 aa9.38□□□□□ -0.91
NPHP3-208ENST00000490993 ASXL1Q8IXJ9 1541 aa9.38□□□□□ -0.91
NPHP3-208ENST00000490993 MTHFSP49914 203 aa9.38□□□□□ -0.91
NPHP3-208ENST00000490993 ZFYVE16Q7Z3T8 1539 aa9.38□□□□□ -0.91
NPHP3-208ENST00000490993 RTF1Q92541 710 aaKnown RBP9.38□□□□□ -0.91
NPHP3-208ENST00000490993 CRBNQ96SW2 442 aa9.37□□□□□ -0.91
NPHP3-208ENST00000490993 SMC4Q9NTJ3 1288 aa9.37□□□□□ -0.91
NPHP3-208ENST00000490993 PTPRTO14522 1441 aa9.37□□□□□ -0.91
NPHP3-208ENST00000490993 MLH3Q9UHC1 1453 aa9.37□□□□□ -0.91
NPHP3-208ENST00000490993 NGDNQ8NEJ9 315 aaKnown RBP9.37□□□□□ -0.91
NPHP3-208ENST00000490993 CDK19Q9BWU1 502 aa9.37□□□□□ -0.91
NPHP3-208ENST00000490993 RRP7AQ9Y3A4 280 aaKnown RBP9.37□□□□□ -0.91
NPHP3-208ENST00000490993 INSRP06213 1382 aa9.37□□□□□ -0.91
NPHP3-208ENST00000490993 CHMP4AQ9BY43 222 aa9.36□□□□□ -0.91
NPHP3-208ENST00000490993 NPC1L1Q9UHC9 1359 aa9.36□□□□□ -0.91
NPHP3-208ENST00000490993 FANCIQ9NVI1 1328 aa9.36□□□□□ -0.91
NPHP3-208ENST00000490993 ZBTB7CA1YPR0 619 aa9.35□□□□□ -0.91
NPHP3-208ENST00000490993 CDCA7LQ96GN5 454 aa9.35□□□□□ -0.91
NPHP3-208ENST00000490993 CFAP44Q96MT7 982 aa9.35□□□□□ -0.91
NPHP3-208ENST00000490993 ZNF692Q9BU19 519 aaPredicted RBP9.35□□□□□ -0.91
NPHP3-208ENST00000490993 GGNBP2Q9H3C7 697 aa9.35□□□□□ -0.91
NPHP3-208ENST00000490993 PLIN1O60240 522 aa9.35□□□□□ -0.91
NPHP3-208ENST00000490993 WDR63Q8IWG1 891 aa9.35□□□□□ -0.91
NPHP3-208ENST00000490993 ZKSCAN2Q63HK3 967 aa9.35□□□□□ -0.91
NPHP3-208ENST00000490993 BCL11AQ9H165 835 aa9.35□□□□□ -0.91
NPHP3-208ENST00000490993 TET3O43151 1660 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms