RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 UHRF1BP1Q6BDS2 1440 aa11.2□□□□□ -0.62
USP4-211ENST00000485450 PLEKHG5O94827 1062 aa11.19□□□□□ -0.62
USP4-211ENST00000485450 TNRQ92752 1358 aa11.19□□□□□ -0.62
USP4-211ENST00000485450 NCBP3Q53F19 620 aaKnown RBP11.18□□□□□ -0.62
USP4-211ENST00000485450 RAB3GAP2Q9H2M9 1393 aa11.18□□□□□ -0.62
USP4-211ENST00000485450 EIF5BO60841 1220 aaKnown RBP11.17□□□□□ -0.62
USP4-211ENST00000485450 ALKQ9UM73 1620 aa11.15□□□□□ -0.62
USP4-211ENST00000485450 ANKRD30BQ9BXX2 1392 aa11.15□□□□□ -0.62
USP4-211ENST00000485450 RRP7BPQ9NSQ0 103 aa11.14□□□□□ -0.63
USP4-211ENST00000485450 KIF3BO15066 747 aa11.14□□□□□ -0.63
USP4-211ENST00000485450 CPS1P31327 1500 aa11.13□□□□□ -0.63
USP4-211ENST00000485450 SALL2Q9Y467 1007 aaPredicted RBP11.13□□□□□ -0.63
USP4-211ENST00000485450 TRPM1Q7Z4N2 1603 aa11.12□□□□□ -0.63
USP4-211ENST00000485450 ADGRB2O60241 1585 aa11.12□□□□□ -0.63
USP4-211ENST00000485450 SCAF11Q99590 1463 aaKnown RBP11.12□□□□□ -0.63
USP4-211ENST00000485450 ASXL1Q8IXJ9 1541 aa11.11□□□□□ -0.63
USP4-211ENST00000485450 FAM50AQ14320 339 aaKnown RBP11.11□□□□□ -0.63
USP4-211ENST00000485450 ADGRB1O14514 1584 aa11.11□□□□□ -0.63
USP4-211ENST00000485450 DLC1Q96QB1 1528 aa11.1□□□□□ -0.63
USP4-211ENST00000485450 SLC52A1Q9NWF4 448 aa11.1□□□□□ -0.63
USP4-211ENST00000485450 CLSPNQ9HAW4 1339 aa11.1□□□□□ -0.63
USP4-211ENST00000485450 PLEKHG1Q9ULL1 1385 aa11.1□□□□□ -0.63
USP4-211ENST00000485450 NUP155O75694 1391 aa11.09□□□□□ -0.63
USP4-211ENST00000485450 TMEM2Q9UHN6 1383 aa11.09□□□□□ -0.63
USP4-211ENST00000485450 NKTRP30414 1462 aaKnown RBP11.09□□□□□ -0.63
USP4-211ENST00000485450 TECPR2O15040 1411 aa11.09□□□□□ -0.63
USP4-211ENST00000485450 CFAP65Q6ZU64 1925 aaKnown RBP11.09□□□□□ -0.63
USP4-211ENST00000485450 WASHC2CQ9Y4E1 1318 aa11.09□□□□□ -0.63
USP4-211ENST00000485450 PIK3C2GO75747 1445 aa11.08□□□□□ -0.64
USP4-211ENST00000485450 CCER1Q8TC90 406 aaPredicted RBP11.08□□□□□ -0.64
USP4-211ENST00000485450 NCOA3Q9Y6Q9 1424 aa11.08□□□□□ -0.64
USP4-211ENST00000485450 PIK3R4Q99570 1358 aa11.08□□□□□ -0.64
USP4-211ENST00000485450 ADAMTS13Q76LX8 1427 aa11.07□□□□□ -0.64
USP4-211ENST00000485450 ARHGEF28Q8N1W1 1705 aaKnown RBP11.07□□□□□ -0.64
USP4-211ENST00000485450 DHX57Q6P158 1386 aaKnown RBP11.06□□□□□ -0.64
USP4-211ENST00000485450 YTHDC1Q96MU7 727 aaKnown RBP11.06□□□□□ -0.64
USP4-211ENST00000485450 RPGRIP1LQ68CZ1 1315 aa11.05□□□□□ -0.64
USP4-211ENST00000485450 PKD2Q13563 968 aa11.05□□□□□ -0.64
USP4-211ENST00000485450 TOPAZ1Q8N9V7 1692 aa11.04□□□□□ -0.64
USP4-211ENST00000485450 CCDC136Q96JN2 1154 aa11.04□□□□□ -0.64
USP4-211ENST00000485450 CHIC2Q9UKJ5 165 aa11.04□□□□□ -0.64
USP4-211ENST00000485450 SUPT16HQ9Y5B9 1047 aaKnown RBP11.04□□□□□ -0.64
USP4-211ENST00000485450 NALCNQ8IZF0 1738 aa11.04□□□□□ -0.64
USP4-211ENST00000485450 PTCH1Q13635 1447 aa11.03□□□□□ -0.64
USP4-211ENST00000485450 ZNF316A6NFI3 1004 aaPredicted RBP11.03□□□□□ -0.64
USP4-211ENST00000485450 NPHP4O75161 1426 aaPredicted RBP11.03□□□□□ -0.64
USP4-211ENST00000485450 STAC3Q96MF2 364 aa11.03□□□□□ -0.64
USP4-211ENST00000485450 USP54Q70EL1 1684 aa11.02□□□□□ -0.65
USP4-211ENST00000485450 MPHOSPH9Q99550 1183 aa11.02□□□□□ -0.65
USP4-211ENST00000485450 RIMS2Q9UQ26 1411 aa11.02□□□□□ -0.65
USP4-211ENST00000485450 ARID4BQ4LE39 1312 aaPredicted RBP11.01□□□□□ -0.65
USP4-211ENST00000485450 GGT6Q6P531 493 aa11.01□□□□□ -0.65
USP4-211ENST00000485450 FBXO31Q5XUX0 539 aaPredicted RBP11.01□□□□□ -0.65
USP4-211ENST00000485450 FMN2Q9NZ56 1722 aa11□□□□□ -0.65
USP4-211ENST00000485450 AMER1Q5JTC6 1135 aaPredicted RBP11□□□□□ -0.65
USP4-211ENST00000485450 CDC42BPGQ6DT37 1551 aa11□□□□□ -0.65
USP4-211ENST00000485450 MSH5O43196 834 aa11□□□□□ -0.65
USP4-211ENST00000485450 CCDC144AA2RUR9 1427 aa10.98□□□□□ -0.65
USP4-211ENST00000485450 NHSL1Q5SYE7 1610 aa10.98□□□□□ -0.65
USP4-211ENST00000485450 IDI1Q13907 227 aa10.98□□□□□ -0.65
USP4-211ENST00000485450 DCCP43146 1447 aa10.97□□□□□ -0.65
USP4-211ENST00000485450 CEBPAP49715 358 aaPredicted RBP10.97□□□□□ -0.65
USP4-211ENST00000485450 LRRC7Q96NW7 1537 aa10.97□□□□□ -0.65
USP4-211ENST00000485450 GPRASP1Q5JY77 1395 aa10.97□□□□□ -0.65
USP4-211ENST00000485450 MIER1Q8N108 512 aa10.97□□□□□ -0.65
USP4-211ENST00000485450 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.97□□□□□ -0.65
USP4-211ENST00000485450 PTPRUQ92729 1446 aa10.95□□□□□ -0.66
USP4-211ENST00000485450 CRYBG1Q9Y4K1 1723 aa10.95□□□□□ -0.66
USP4-211ENST00000485450 USP32Q8NFA0 1604 aa10.95□□□□□ -0.66
USP4-211ENST00000485450 THEMISQ8N1K5 641 aaPredicted RBP10.95□□□□□ -0.66
USP4-211ENST00000485450 FAM135BQ49AJ0 1406 aa10.95□□□□□ -0.66
USP4-211ENST00000485450 RALGAPBQ86X10 1494 aa10.94□□□□□ -0.66
USP4-211ENST00000485450 ITSN1Q15811 1721 aa10.93□□□□□ -0.66
USP4-211ENST00000485450 KIF1AQ12756 1690 aa10.93□□□□□ -0.66
USP4-211ENST00000485450 SIRT1Q96EB6 747 aa10.93□□□□□ -0.66
USP4-211ENST00000485450 AHDC1Q5TGY3 1603 aaPredicted RBP10.92□□□□□ -0.66
USP4-211ENST00000485450 COL22A1Q8NFW1 1626 aaPredicted RBP10.92□□□□□ -0.66
USP4-211ENST00000485450 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.92□□□□□ -0.66
USP4-211ENST00000485450 QRICH2Q9H0J4 1663 aa10.92□□□□□ -0.66
USP4-211ENST00000485450 PKNOX2Q96KN3 472 aa10.92□□□□□ -0.66
USP4-211ENST00000485450 DMRT2Q9Y5R5 561 aa10.91□□□□□ -0.66
USP4-211ENST00000485450 MLECQ14165 292 aa10.91□□□□□ -0.66
USP4-211ENST00000485450 MST1RQ04912 1400 aa10.91□□□□□ -0.66
USP4-211ENST00000485450 LTKP29376 864 aa10.91□□□□□ -0.66
USP4-211ENST00000485450 NRKQ7Z2Y5 1582 aa10.9□□□□□ -0.66
USP4-211ENST00000485450 TIMELESSQ9UNS1 1208 aa10.9□□□□□ -0.66
USP4-211ENST00000485450 TBX22Q9Y458 520 aa10.9□□□□□ -0.66
USP4-211ENST00000485450 ESF1Q9H501 851 aaKnown RBP10.89□□□□□ -0.67
USP4-211ENST00000485450 TRPM3Q9HCF6 1732 aaPredicted RBP10.89□□□□□ -0.67
USP4-211ENST00000485450 AKAP12Q02952 1782 aa10.89□□□□□ -0.67
USP4-211ENST00000485450 SLC4A1APQ9BWU0 796 aaKnown RBP10.89□□□□□ -0.67
USP4-211ENST00000485450 SHPRHQ149N8 1683 aa10.89□□□□□ -0.67
USP4-211ENST00000485450 MARF1Q9Y4F3 1742 aaKnown RBP10.88□□□□□ -0.67
USP4-211ENST00000485450 ABCC11Q96J66 1382 aa10.88□□□□□ -0.67
USP4-211ENST00000485450 MYT1LQ9UL68 1186 aa10.87□□□□□ -0.67
USP4-211ENST00000485450 ABCA3Q99758 1704 aa10.87□□□□□ -0.67
USP4-211ENST00000485450 LRPPRCP42704 1394 aaKnown RBP10.87□□□□□ -0.67
USP4-211ENST00000485450 KCNA4P22459 653 aa10.87□□□□□ -0.67
USP4-211ENST00000485450 MYOM1P52179 1685 aa10.86□□□□□ -0.67
USP4-211ENST00000485450 ANKLE2Q86XL3 938 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms