RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 FANCAO15360 1455 aa7.09□□□□□ -1.27
SYNE1-220ENST00000471834 ADGRB2O60241 1585 aa7.09□□□□□ -1.27
SYNE1-220ENST00000471834 ADGRB1O14514 1584 aa7.09□□□□□ -1.27
SYNE1-220ENST00000471834 TERF1P54274 439 aa7.09□□□□□ -1.27
SYNE1-220ENST00000471834 B4GALNT3Q6L9W6 998 aa7.09□□□□□ -1.27
SYNE1-220ENST00000471834 ZNF692Q9BU19 519 aaPredicted RBP7.09□□□□□ -1.27
SYNE1-220ENST00000471834 PPIP5K1Q6PFW1 1433 aa7.09□□□□□ -1.27
SYNE1-220ENST00000471834 SAMD9LQ8IVG5 1584 aa7.08□□□□□ -1.28
SYNE1-220ENST00000471834 PDE3AQ14432 1141 aa7.08□□□□□ -1.28
SYNE1-220ENST00000471834 CCDC27Q2M243 656 aa7.08□□□□□ -1.28
SYNE1-220ENST00000471834 A0A0G2JS52 829 aa7.08□□□□□ -1.28
SYNE1-220ENST00000471834 RTL5Q5HYW3 569 aaPredicted RBP7.08□□□□□ -1.28
SYNE1-220ENST00000471834 CDC42BPGQ6DT37 1551 aa7.07□□□□□ -1.28
SYNE1-220ENST00000471834 MYOM1P52179 1685 aa7.07□□□□□ -1.28
SYNE1-220ENST00000471834 MROH1Q8NDA8 1641 aa7.07□□□□□ -1.28
SYNE1-220ENST00000471834 IL17RAQ96F46 866 aa7.07□□□□□ -1.28
SYNE1-220ENST00000471834 CENPQQ7L2Z9 268 aaPredicted RBP7.07□□□□□ -1.28
SYNE1-220ENST00000471834 MED14O60244 1454 aa7.07□□□□□ -1.28
SYNE1-220ENST00000471834 ZNF326Q5BKZ1 582 aaKnown RBP7.07□□□□□ -1.28
SYNE1-220ENST00000471834 PIK3R4Q99570 1358 aa7.07□□□□□ -1.28
SYNE1-220ENST00000471834 SETBP1Q9Y6X0 1596 aa7.07□□□□□ -1.28
SYNE1-220ENST00000471834 RCAN3Q9UKA8 241 aa7.07□□□□□ -1.28
SYNE1-220ENST00000471834 PLB1Q6P1J6 1458 aa7.06□□□□□ -1.28
SYNE1-220ENST00000471834 SLC24A1O60721 1099 aa7.06□□□□□ -1.28
SYNE1-220ENST00000471834 GSE1Q14687 1217 aa7.06□□□□□ -1.28
SYNE1-220ENST00000471834 SCAF11Q99590 1463 aaKnown RBP7.06□□□□□ -1.28
SYNE1-220ENST00000471834 ERVK-7P63135 1459 aa7.06□□□□□ -1.28
SYNE1-220ENST00000471834 ABCA6Q8N139 1617 aa7.06□□□□□ -1.28
SYNE1-220ENST00000471834 NUP155O75694 1391 aa7.06□□□□□ -1.28
SYNE1-220ENST00000471834 BRPF1P55201 1214 aaPredicted RBP7.06□□□□□ -1.28
SYNE1-220ENST00000471834 ABCC3O15438 1527 aa7.05□□□□□ -1.28
SYNE1-220ENST00000471834 ZFYVE9O95405 1425 aa7.05□□□□□ -1.28
SYNE1-220ENST00000471834 CLCN1P35523 988 aa7.05□□□□□ -1.28
SYNE1-220ENST00000471834 STAG3Q9UJ98 1225 aa7.05□□□□□ -1.28
SYNE1-220ENST00000471834 CARMIL2Q6F5E8 1435 aa7.04□□□□□ -1.28
SYNE1-220ENST00000471834 SLFN5Q08AF3 891 aa7.04□□□□□ -1.28
SYNE1-220ENST00000471834 ZNF644Q9H582 1327 aaPredicted RBP7.04□□□□□ -1.28
SYNE1-220ENST00000471834 ANP32AP39687 249 aaKnown RBP7.04□□□□□ -1.28
SYNE1-220ENST00000471834 EXOC6Q8TAG9 804 aa7.04□□□□□ -1.28
SYNE1-220ENST00000471834 DDRGK1Q96HY6 314 aa7.03□□□□□ -1.28
SYNE1-220ENST00000471834 ABCC1P33527 1531 aa7.03□□□□□ -1.28
SYNE1-220ENST00000471834 ASXL1Q8IXJ9 1541 aa7.03□□□□□ -1.28
SYNE1-220ENST00000471834 ARID3CA6NKF2 412 aa7.03□□□□□ -1.28
SYNE1-220ENST00000471834 NFKBIBQ15653 356 aa7.03□□□□□ -1.28
SYNE1-220ENST00000471834 ZBTB47Q9UFB7 747 aaPredicted RBP7.03□□□□□ -1.28
SYNE1-220ENST00000471834 DISP3Q9P2K9 1392 aa7.03□□□□□ -1.28
SYNE1-220ENST00000471834 FAM161AQ3B820 660 aa7.03□□□□□ -1.28
SYNE1-220ENST00000471834 ST20-MTHFSA0A0A6YYL1 179 aa7.02□□□□□ -1.29
SYNE1-220ENST00000471834 HAP1P54257 671 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-220ENST00000471834 ADRA2BP18089 450 aa7.02□□□□□ -1.29
SYNE1-220ENST00000471834 PKD2Q13563 968 aa7.02□□□□□ -1.29
SYNE1-220ENST00000471834 PLCH2O75038 1416 aa7.02□□□□□ -1.29
SYNE1-220ENST00000471834 RSPH6AQ9H0K4 717 aa7.02□□□□□ -1.29
SYNE1-220ENST00000471834 NKTRP30414 1462 aaKnown RBP7.02□□□□□ -1.29
SYNE1-220ENST00000471834 CT47B1P0C2W7 299 aaPredicted RBP7.02□□□□□ -1.29
SYNE1-220ENST00000471834 IL27Q8NEV9 243 aa7.01□□□□□ -1.29
SYNE1-220ENST00000471834 HIRIP3Q9BW71 556 aaPredicted RBP7.01□□□□□ -1.29
SYNE1-220ENST00000471834 SPHKAPQ2M3C7 1700 aa7.01□□□□□ -1.29
SYNE1-220ENST00000471834 RRP7BPQ9NSQ0 103 aa7.01□□□□□ -1.29
SYNE1-220ENST00000471834 NOS1P29475 1434 aa7.01□□□□□ -1.29
SYNE1-220ENST00000471834 MAPK8IP3Q9UPT6 1336 aa7.01□□□□□ -1.29
SYNE1-220ENST00000471834 PNPLA6Q8IY17 1366 aa7.01□□□□□ -1.29
SYNE1-220ENST00000471834 COL3A1P02461 1466 aaPredicted RBP7□□□□□ -1.29
SYNE1-220ENST00000471834 ZFYVE16Q7Z3T8 1539 aa7□□□□□ -1.29
SYNE1-220ENST00000471834 DCAF11Q8TEB1 546 aa7□□□□□ -1.29
SYNE1-220ENST00000471834 NSD2O96028 1365 aa7□□□□□ -1.29
SYNE1-220ENST00000471834 ADGRB3O60242 1522 aa6.99□□□□□ -1.29
SYNE1-220ENST00000471834 C14orf37Q86TY3 774 aa6.99□□□□□ -1.29
SYNE1-220ENST00000471834 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.99□□□□□ -1.29
SYNE1-220ENST00000471834 CLTCL1P53675 1640 aa6.99□□□□□ -1.29
SYNE1-220ENST00000471834 PDLIM2Q96JY6 352 aa6.99□□□□□ -1.29
SYNE1-220ENST00000471834 P3H3Q8IVL6 736 aa6.99□□□□□ -1.29
SYNE1-220ENST00000471834 NPM2Q86SE8 214 aaKnown RBP6.99□□□□□ -1.29
SYNE1-220ENST00000471834 TBC1D32Q96NH3 1257 aa6.98□□□□□ -1.29
SYNE1-220ENST00000471834 ARHGEF40Q8TER5 1519 aa6.98□□□□□ -1.29
SYNE1-220ENST00000471834 CANXP27824 592 aaKnown RBP6.98□□□□□ -1.29
SYNE1-220ENST00000471834 SHPRHQ149N8 1683 aa6.98□□□□□ -1.29
SYNE1-220ENST00000471834 PIK3C2BO00750 1634 aa6.98□□□□□ -1.29
SYNE1-220ENST00000471834 ANO8Q9HCE9 1232 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-220ENST00000471834 SMC5Q8IY18 1101 aa6.98□□□□□ -1.29
SYNE1-220ENST00000471834 SALL2Q9Y467 1007 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-220ENST00000471834 TET3O43151 1660 aa6.98□□□□□ -1.29
SYNE1-220ENST00000471834 RBM25P49756 843 aaKnown RBP6.98□□□□□ -1.29
SYNE1-220ENST00000471834 CIZ1Q9ULV3 898 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-220ENST00000471834 CFDP1Q9UEE9 299 aaPredicted RBP6.98□□□□□ -1.29
SYNE1-220ENST00000471834 HS1BP3Q53T59 392 aa6.97□□□□□ -1.29
SYNE1-220ENST00000471834 VIRMAQ69YN4 1812 aaKnown RBP6.97□□□□□ -1.29
SYNE1-220ENST00000471834 EFCAB6Q5THR3 1501 aa6.97□□□□□ -1.29
SYNE1-220ENST00000471834 SNX21Q969T3 373 aa6.97□□□□□ -1.29
SYNE1-220ENST00000471834 IFT172Q9UG01 1749 aa6.96□□□□□ -1.29
SYNE1-220ENST00000471834 PPP2R1AP30153 589 aa6.96□□□□□ -1.29
SYNE1-220ENST00000471834 CDC42BPBQ9Y5S2 1711 aa6.96□□□□□ -1.3
SYNE1-220ENST00000471834 TRAPPC8Q9Y2L5 1435 aa6.95□□□□□ -1.3
SYNE1-220ENST00000471834 PPP1R9BQ96SB3 815 aa6.95□□□□□ -1.3
SYNE1-220ENST00000471834 IL16Q14005 1332 aa6.95□□□□□ -1.3
SYNE1-220ENST00000471834 CYP2E1P05181 493 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-220ENST00000471834 HDAC1Q13547 482 aaPredicted RBP6.95□□□□□ -1.3
SYNE1-220ENST00000471834 ZNF428Q96B54 188 aa6.94□□□□□ -1.3
SYNE1-220ENST00000471834 FAM9BQ8IZU0 186 aa6.94□□□□□ -1.3
SYNE1-220ENST00000471834 LRRC7Q96NW7 1537 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms