RNA–Protein interactions for RNA: ENST00000427778.1

LINC00963-204, long intergenic non-protein coding RNA 963, human

TSL 2

Gene LINC00963, Length 382 nt, Biotype lincRNA, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00963-204	ENST00000427778	CFAP65	Q6ZU64	1925 aa	Known RBP	13.54	□□□□□ -0.24
LINC00963-204	ENST00000427778	EFCAB6	Q5THR3	1501 aa		13.54	□□□□□ -0.24
LINC00963-204	ENST00000427778	KANK1	Q14678	1352 aa		13.53	□□□□□ -0.24
LINC00963-204	ENST00000427778	TET3	O43151	1660 aa		13.52	□□□□□ -0.25
LINC00963-204	ENST00000427778	GCC2	Q8IWJ2	1684 aa		13.52	□□□□□ -0.25
LINC00963-204	ENST00000427778	XIRP1	Q702N8	1843 aa	Known RBP	13.52	□□□□□ -0.25
LINC00963-204	ENST00000427778	KDM5A	P29375	1690 aa	Known RBP	13.51	□□□□□ -0.25
LINC00963-204	ENST00000427778	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.51	□□□□□ -0.25
LINC00963-204	ENST00000427778	PPARGC1B	Q86YN6	1023 aa	Known RBP	13.51	□□□□□ -0.25
LINC00963-204	ENST00000427778	IQGAP3	Q86VI3	1631 aa		13.5	□□□□□ -0.25
LINC00963-204	ENST00000427778	RPRD2	Q5VT52	1461 aa	Known RBP	13.49	□□□□□ -0.25
LINC00963-204	ENST00000427778	UBR1	Q8IWV7	1749 aa		13.49	□□□□□ -0.25
LINC00963-204	ENST00000427778	UGGT1	Q9NYU2	1555 aa		13.49	□□□□□ -0.25
LINC00963-204	ENST00000427778	AKT1S1	Q96B36	256 aa		13.48	□□□□□ -0.25
LINC00963-204	ENST00000427778	MED14	O60244	1454 aa		13.48	□□□□□ -0.25
LINC00963-204	ENST00000427778	LRRC7	Q96NW7	1537 aa		13.47	□□□□□ -0.25
LINC00963-204	ENST00000427778	NPHP4	O75161	1426 aa	Predicted RBP	13.46	□□□□□ -0.26
LINC00963-204	ENST00000427778	NOS1	P29475	1434 aa		13.46	□□□□□ -0.26
LINC00963-204	ENST00000427778	RGS17	Q9UGC6	210 aa	Predicted RBP	13.45	□□□□□ -0.26
LINC00963-204	ENST00000427778		E9PCH4	1651 aa		13.44	□□□□□ -0.26
LINC00963-204	ENST00000427778	PIK3C2B	O00750	1634 aa		13.44	□□□□□ -0.26
LINC00963-204	ENST00000427778	HFM1	A2PYH4	1435 aa		13.43	□□□□□ -0.26
LINC00963-204	ENST00000427778	NAIP	Q13075	1403 aa		13.43	□□□□□ -0.26
LINC00963-204	ENST00000427778	SLIT1	O75093	1534 aa		13.43	□□□□□ -0.26
LINC00963-204	ENST00000427778	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.42	□□□□□ -0.26
LINC00963-204	ENST00000427778	ZBTB12	Q9Y330	459 aa	Predicted RBP	13.42	□□□□□ -0.26
LINC00963-204	ENST00000427778	ARHGAP23	Q9P227	1491 aa		13.42	□□□□□ -0.26
LINC00963-204	ENST00000427778	ITGAE	P38570	1179 aa		13.41	□□□□□ -0.26
LINC00963-204	ENST00000427778	ANKLE2	Q86XL3	938 aa		13.41	□□□□□ -0.26
LINC00963-204	ENST00000427778	ADGRB3	O60242	1522 aa		13.4	□□□□□ -0.26
LINC00963-204	ENST00000427778	ROBO1	Q9Y6N7	1651 aa		13.4	□□□□□ -0.26
LINC00963-204	ENST00000427778	NUP155	O75694	1391 aa		13.38	□□□□□ -0.27
LINC00963-204	ENST00000427778	SPHKAP	Q2M3C7	1700 aa		13.38	□□□□□ -0.27
LINC00963-204	ENST00000427778	MYO5B	Q9ULV0	1848 aa		13.37	□□□□□ -0.27
LINC00963-204	ENST00000427778	SCAF11	Q99590	1463 aa	Known RBP	13.36	□□□□□ -0.27
LINC00963-204	ENST00000427778	TMEM131L	A2VDJ0	1609 aa		13.36	□□□□□ -0.27
LINC00963-204	ENST00000427778	HAX1	O00165	279 aa		13.36	□□□□□ -0.27
LINC00963-204	ENST00000427778	PIP4P2	Q8N4L2	257 aa		13.36	□□□□□ -0.27
LINC00963-204	ENST00000427778	SLC52A1	Q9NWF4	448 aa		13.36	□□□□□ -0.27
LINC00963-204	ENST00000427778	POTEA	Q6S8J7	498 aa		13.35	□□□□□ -0.27
LINC00963-204	ENST00000427778	PHLPP1	O60346	1717 aa		13.35	□□□□□ -0.27
LINC00963-204	ENST00000427778	TMEM2	Q9UHN6	1383 aa		13.34	□□□□□ -0.27
LINC00963-204	ENST00000427778	IDI1	Q13907	227 aa		13.34	□□□□□ -0.27
LINC00963-204	ENST00000427778	REM2	Q8IYK8	340 aa	Predicted RBP	13.34	□□□□□ -0.27
LINC00963-204	ENST00000427778	TRPM2	O94759	1503 aa		13.31	□□□□□ -0.28
LINC00963-204	ENST00000427778	ZFYVE9	O95405	1425 aa		13.3	□□□□□ -0.28
LINC00963-204	ENST00000427778	FAM135B	Q49AJ0	1406 aa		13.3	□□□□□ -0.28
LINC00963-204	ENST00000427778	LTK	P29376	864 aa		13.28	□□□□□ -0.28
LINC00963-204	ENST00000427778	TXNDC2	Q86VQ3	553 aa		13.27	□□□□□ -0.29
LINC00963-204	ENST00000427778	STAG3	Q9UJ98	1225 aa		13.27	□□□□□ -0.29
LINC00963-204	ENST00000427778	EID1	Q9Y6B2	187 aa		13.27	□□□□□ -0.29
LINC00963-204	ENST00000427778	ACIN1	Q9UKV3	1341 aa	Known RBP	13.27	□□□□□ -0.29
LINC00963-204	ENST00000427778	CLTCL1	P53675	1640 aa		13.27	□□□□□ -0.29
LINC00963-204	ENST00000427778	KIF1B	O60333	1816 aa		13.27	□□□□□ -0.29
LINC00963-204	ENST00000427778	COL16A1	Q07092	1604 aa	Predicted RBP	13.24	□□□□□ -0.29
LINC00963-204	ENST00000427778	RIMS2	Q9UQ26	1411 aa		13.24	□□□□□ -0.29
LINC00963-204	ENST00000427778	DIP2A	Q14689	1571 aa		13.24	□□□□□ -0.29
LINC00963-204	ENST00000427778	NWD1	Q149M9	1564 aa		13.24	□□□□□ -0.29
LINC00963-204	ENST00000427778	SETD5	Q9C0A6	1442 aa		13.23	□□□□□ -0.29
LINC00963-204	ENST00000427778	PLEKHG1	Q9ULL1	1385 aa		13.23	□□□□□ -0.29
LINC00963-204	ENST00000427778	SHPRH	Q149N8	1683 aa		13.23	□□□□□ -0.29
LINC00963-204	ENST00000427778	CHD2	O14647	1828 aa	Known RBP	13.22	□□□□□ -0.29
LINC00963-204	ENST00000427778	PITPNM1	O00562	1244 aa		13.21	□□□□□ -0.29
LINC00963-204	ENST00000427778	HDGF	P51858	240 aa	Known RBP	13.21	□□□□□ -0.29
LINC00963-204	ENST00000427778	NEXMIF	Q5QGS0	1516 aa		13.2	□□□□□ -0.3
LINC00963-204	ENST00000427778	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.2	□□□□□ -0.3
LINC00963-204	ENST00000427778	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.2	□□□□□ -0.3	2e-6	■■□□□ 14
LINC00963-204	ENST00000427778	TRIM52	Q96A61	297 aa		13.2	□□□□□ -0.3
LINC00963-204	ENST00000427778	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.2	□□□□□ -0.3
LINC00963-204	ENST00000427778	SETBP1	Q9Y6X0	1596 aa		13.2	□□□□□ -0.3
LINC00963-204	ENST00000427778	TMEM94	Q12767	1356 aa		13.2	□□□□□ -0.3
LINC00963-204	ENST00000427778	NKTR	P30414	1462 aa	Known RBP	13.19	□□□□□ -0.3
LINC00963-204	ENST00000427778	LRP6	O75581	1613 aa		13.19	□□□□□ -0.3
LINC00963-204	ENST00000427778	NRXN3	Q9Y4C0	1643 aa		13.19	□□□□□ -0.3
LINC00963-204	ENST00000427778	JCAD	Q9P266	1359 aa		13.19	□□□□□ -0.3
LINC00963-204	ENST00000427778	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.18	□□□□□ -0.3
LINC00963-204	ENST00000427778	RAB3GAP2	Q9H2M9	1393 aa		13.18	□□□□□ -0.3
LINC00963-204	ENST00000427778	PPL	O60437	1756 aa		13.17	□□□□□ -0.3
LINC00963-204	ENST00000427778	ADAMTS13	Q76LX8	1427 aa		13.17	□□□□□ -0.3
LINC00963-204	ENST00000427778	FXR2	P51116	673 aa	Known RBP eCLIP	13.16	□□□□□ -0.3
LINC00963-204	ENST00000427778	PIK3R4	Q99570	1358 aa		13.16	□□□□□ -0.3
LINC00963-204	ENST00000427778	IFT172	Q9UG01	1749 aa		13.16	□□□□□ -0.3
LINC00963-204	ENST00000427778	PPP1R15A	O75807	674 aa	Predicted RBP	13.15	□□□□□ -0.3
LINC00963-204	ENST00000427778	CHGA	P10645	457 aa	Known RBP	13.15	□□□□□ -0.3
LINC00963-204	ENST00000427778	HRC	P23327	699 aa		13.15	□□□□□ -0.3
LINC00963-204	ENST00000427778	MPHOSPH9	Q99550	1183 aa		13.15	□□□□□ -0.3
LINC00963-204	ENST00000427778	TBX22	Q9Y458	520 aa		13.15	□□□□□ -0.3
LINC00963-204	ENST00000427778	KCNA6	P17658	529 aa		13.14	□□□□□ -0.31
LINC00963-204	ENST00000427778	SLC26A8	Q96RN1	970 aa		13.14	□□□□□ -0.31
LINC00963-204	ENST00000427778	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.14	□□□□□ -0.31
LINC00963-204	ENST00000427778	SRCAP	Q6ZRS2	3230 aa		13.14	□□□□□ -0.31
LINC00963-204	ENST00000427778	CCDC144A	A2RUR9	1427 aa		13.13	□□□□□ -0.31
LINC00963-204	ENST00000427778	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.13	□□□□□ -0.31
LINC00963-204	ENST00000427778	XRN1	Q8IZH2	1706 aa	Known RBP	13.13	□□□□□ -0.31
LINC00963-204	ENST00000427778	MSH6	P52701	1360 aa		13.13	□□□□□ -0.31
LINC00963-204	ENST00000427778	SPATA31E1	Q6ZUB1	1445 aa		13.13	□□□□□ -0.31
LINC00963-204	ENST00000427778	ZNF772	Q68DY9	489 aa	Predicted RBP	13.12	□□□□□ -0.31
LINC00963-204	ENST00000427778	RPGRIP1L	Q68CZ1	1315 aa		13.12	□□□□□ -0.31
LINC00963-204	ENST00000427778	MEX3C	Q5U5Q3	659 aa	Known RBP	13.11	□□□□□ -0.31
LINC00963-204	ENST00000427778	FOXD4L1	Q9NU39	408 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 55 ms