RNA–Protein interactions for RNA: ENST00000427778.1

LINC00963-204, long intergenic non-protein coding RNA 963, humanhuman

TSL 2

Gene LINC00963, Length 382 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-204ENST00000427778 AEBP2Q6ZN18 517 aaPredicted RBP24.26■■□□□ 1.47
LINC00963-204ENST00000427778 CHIC1Q5VXU3 224 aa22.83■■□□□ 1.25
LINC00963-204ENST00000427778 NISCHQ9Y2I1 1504 aa21.78■■□□□ 1.08
LINC00963-204ENST00000427778 SENP3Q9H4L4 574 aaPredicted RBP20.92■□□□□ 0.94
LINC00963-204ENST00000427778 PHF23Q9BUL5 403 aaPredicted RBP20.52■□□□□ 0.88
LINC00963-204ENST00000427778 ABCC9O60706 1549 aa19.67■□□□□ 0.74
LINC00963-204ENST00000427778 CCDC180Q9P1Z9 1646 aa19.5■□□□□ 0.71
LINC00963-204ENST00000427778 FOXD1Q16676 465 aa19.48■□□□□ 0.71
LINC00963-204ENST00000427778 POTEDQ86YR6 584 aa18.92■□□□□ 0.62
LINC00963-204ENST00000427778 DNAJC5BQ9UF47 199 aa18.78■□□□□ 0.6
LINC00963-204ENST00000427778 RB1CC1Q8TDY2 1594 aa18.58■□□□□ 0.56
LINC00963-204ENST00000427778 MSH5O43196 834 aa18.53■□□□□ 0.56
LINC00963-204ENST00000427778 UNC13AQ9UPW8 1703 aa18.33■□□□□ 0.52
LINC00963-204ENST00000427778 NACADO15069 1562 aa18.3■□□□□ 0.52
LINC00963-204ENST00000427778 MYO15BQ96JP2 1530 aa18.23■□□□□ 0.51
LINC00963-204ENST00000427778 PIAS4Q8N2W9 510 aaPredicted RBP18.17■□□□□ 0.5
LINC00963-204ENST00000427778 ZCCHC6Q5VYS8 1495 aaKnown RBP18.14■□□□□ 0.5
LINC00963-204ENST00000427778 PABPN1Q86U42 306 aaKnown RBP eCLIP18.1■□□□□ 0.49
LINC00963-204ENST00000427778 DCAF1Q9Y4B6 1507 aa18.09■□□□□ 0.49
LINC00963-204ENST00000427778 BICRAQ9NZM4 1560 aa18.04■□□□□ 0.48
LINC00963-204ENST00000427778 DCAF8L2P0C7V8 631 aa17.99■□□□□ 0.47
LINC00963-204ENST00000427778 PLPPR3Q6T4P5 718 aa17.87■□□□□ 0.45
LINC00963-204ENST00000427778 CC2D2AQ9P2K1 1620 aa17.83■□□□□ 0.44
LINC00963-204ENST00000427778 CECR2Q9BXF3 1484 aa17.78■□□□□ 0.44
LINC00963-204ENST00000427778 SHROOM4Q9ULL8 1493 aa17.76■□□□□ 0.43
LINC00963-204ENST00000427778 PPP6R1Q9UPN7 881 aa17.76■□□□□ 0.43
LINC00963-204ENST00000427778 ADRA2BP18089 450 aa17.74■□□□□ 0.43
LINC00963-204ENST00000427778 DNAJC5Q9H3Z4 198 aa17.67■□□□□ 0.42
LINC00963-204ENST00000427778 SCRIBQ14160 1630 aa17.65■□□□□ 0.42
LINC00963-204ENST00000427778 EIF4G1Q04637 1599 aaKnown RBP17.65■□□□□ 0.42
LINC00963-204ENST00000427778 CUX2O14529 1486 aa17.23■□□□□ 0.35
LINC00963-204ENST00000427778 ERCC6Q03468 1493 aa17.05■□□□□ 0.32
LINC00963-204ENST00000427778 SMARCA4P51532 1647 aa16.93■□□□□ 0.3
LINC00963-204ENST00000427778 BAZ1AQ9NRL2 1556 aaPredicted RBP16.9■□□□□ 0.3
LINC00963-204ENST00000427778 NCAPD3P42695 1498 aa16.86■□□□□ 0.29
LINC00963-204ENST00000427778 SMARCA2P51531 1590 aa16.85■□□□□ 0.29
LINC00963-204ENST00000427778 THOC2Q8NI27 1593 aaKnown RBP16.83■□□□□ 0.28
LINC00963-204ENST00000427778 PEG3Q9GZU2 1588 aa16.83■□□□□ 0.28
LINC00963-204ENST00000427778 ATAD2BQ9ULI0 1458 aa16.82■□□□□ 0.28
LINC00963-204ENST00000427778 HMGXB3Q12766 1538 aa16.81■□□□□ 0.28
LINC00963-204ENST00000427778 NESP48681 1621 aa16.75■□□□□ 0.27
LINC00963-204ENST00000427778 MROH2BQ7Z745 1585 aa16.75■□□□□ 0.27
LINC00963-204ENST00000427778 KIF21AQ7Z4S6 1674 aa16.7■□□□□ 0.26
LINC00963-204ENST00000427778 TRIM41Q8WV44 630 aa16.7■□□□□ 0.26
LINC00963-204ENST00000427778 BAZ1BQ9UIG0 1483 aaKnown RBP16.67■□□□□ 0.26
LINC00963-204ENST00000427778 LAMC3Q9Y6N6 1575 aa16.63■□□□□ 0.25
LINC00963-204ENST00000427778 WIZO95785 1651 aa16.57■□□□□ 0.24
LINC00963-204ENST00000427778 RSF1Q96T23 1441 aaPredicted RBP16.53■□□□□ 0.24
LINC00963-204ENST00000427778 DMRT2Q9Y5R5 561 aa16.45■□□□□ 0.22
LINC00963-204ENST00000427778 PDS5BQ9NTI5 1447 aa16.44■□□□□ 0.22
LINC00963-204ENST00000427778 MAPK8IP2Q13387 824 aaPredicted RBP16.43■□□□□ 0.22
LINC00963-204ENST00000427778 TOP2AP11388 1531 aaKnown RBP16.43■□□□□ 0.22
LINC00963-204ENST00000427778 WDR62O43379 1518 aa16.41■□□□□ 0.22
LINC00963-204ENST00000427778 MRC2Q9UBG0 1479 aa16.39■□□□□ 0.21
LINC00963-204ENST00000427778 SCAF1Q9H7N4 1312 aaKnown RBP16.35■□□□□ 0.21
LINC00963-204ENST00000427778 CADPSQ9ULU8 1353 aa16.31■□□□□ 0.2
LINC00963-204ENST00000427778 CACNB1Q02641 598 aaPredicted RBP16.27■□□□□ 0.2
LINC00963-204ENST00000427778 RIMBP3CA6NJZ7 1639 aa16.27■□□□□ 0.19
LINC00963-204ENST00000427778 RIMBP3BA6NNM3 1639 aa16.27■□□□□ 0.19
LINC00963-204ENST00000427778 RIMBP3Q9UFD9 1639 aa16.27■□□□□ 0.19
LINC00963-204ENST00000427778 CFTRP13569 1480 aa16.24■□□□□ 0.19
LINC00963-204ENST00000427778 CEP164Q9UPV0 1460 aa16.22■□□□□ 0.19
LINC00963-204ENST00000427778 PRDM2Q13029 1718 aa16.22■□□□□ 0.19
LINC00963-204ENST00000427778 CCDC88BA6NC98 1476 aa16.18■□□□□ 0.18
LINC00963-204ENST00000427778 OSCARQ8IYS5 282 aa16.18■□□□□ 0.18
LINC00963-204ENST00000427778 FANCD2Q9BXW9 1451 aa16.13■□□□□ 0.17
LINC00963-204ENST00000427778 ARHGEF11O15085 1522 aa16.09■□□□□ 0.17
LINC00963-204ENST00000427778 URB2Q14146 1524 aaKnown RBP16.03■□□□□ 0.16
LINC00963-204ENST00000427778 DCAF8L1A6NGE4 600 aa15.99■□□□□ 0.15
LINC00963-204ENST00000427778 CHD1O14646 1710 aa15.97■□□□□ 0.15
LINC00963-204ENST00000427778 EIF4G3O43432 1585 aaKnown RBP15.93■□□□□ 0.14
LINC00963-204ENST00000427778 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
LINC00963-204ENST00000427778 ZNF608Q9ULD9 1512 aaPredicted RBP15.9■□□□□ 0.14
LINC00963-204ENST00000427778 DNMBPQ6XZF7 1577 aa15.89■□□□□ 0.13
LINC00963-204ENST00000427778 IFT140Q96RY7 1462 aa15.89■□□□□ 0.13
LINC00963-204ENST00000427778 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
LINC00963-204ENST00000427778 SUPT5HO00267 1087 aaKnown RBP15.88■□□□□ 0.13
LINC00963-204ENST00000427778 ARAP1Q96P48 1450 aa15.88■□□□□ 0.13
LINC00963-204ENST00000427778 TRHP20396 242 aaPredicted RBP15.86■□□□□ 0.13
LINC00963-204ENST00000427778 CYB5RLQ6IPT4 315 aa15.84■□□□□ 0.13
LINC00963-204ENST00000427778 TARBP1Q13395 1621 aaKnown RBP15.76■□□□□ 0.11
LINC00963-204ENST00000427778 POLA1P09884 1462 aaPredicted RBP15.74■□□□□ 0.11
LINC00963-204ENST00000427778 CUX1P39880 1505 aa15.73■□□□□ 0.11
LINC00963-204ENST00000427778 WDR97A6NE52 1622 aa15.69■□□□□ 0.1
LINC00963-204ENST00000427778 RNF39Q9H2S5 420 aa15.69■□□□□ 0.1
LINC00963-204ENST00000427778 FGD5Q6ZNL6 1462 aa15.67■□□□□ 0.1
LINC00963-204ENST00000427778 CLASP1Q7Z460 1538 aa15.66■□□□□ 0.1
LINC00963-204ENST00000427778 BIVM-ERCC5R4GMW8 1640 aa15.64■□□□□ 0.09
LINC00963-204ENST00000427778 AQRO60306 1485 aaKnown RBP eCLIP15.64■□□□□ 0.09
LINC00963-204ENST00000427778 SOGA1O94964 1423 aa15.62■□□□□ 0.09
LINC00963-204ENST00000427778 SYNJ1O43426 1573 aa15.62■□□□□ 0.09
LINC00963-204ENST00000427778 TOP2BQ02880 1626 aa15.61■□□□□ 0.09
LINC00963-204ENST00000427778 RAD54L2Q9Y4B4 1467 aa15.61■□□□□ 0.09
LINC00963-204ENST00000427778 HOXD11P31277 338 aaPredicted RBP15.6■□□□□ 0.09
LINC00963-204ENST00000427778 FBLN2P98095 1184 aa15.59■□□□□ 0.09
LINC00963-204ENST00000427778 WRNQ14191 1432 aaPredicted RBP eCLIP15.58■□□□□ 0.08
LINC00963-204ENST00000427778 PPP4R3CPQ6ZMV5 832 aa15.57■□□□□ 0.08
LINC00963-204ENST00000427778 ABCA10Q8WWZ4 1543 aa15.56■□□□□ 0.08
LINC00963-204ENST00000427778 SNAPC4Q5SXM2 1469 aa15.55■□□□□ 0.08
LINC00963-204ENST00000427778 ABCA5Q8WWZ7 1642 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms