RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 FANCAO15360 1455 aa13.28□□□□□ -0.28
MSH2-202ENST00000406134 SCAF11Q99590 1463 aaKnown RBP13.28□□□□□ -0.28
MSH2-202ENST00000406134 RRP1P56182 461 aaKnown RBP13.27□□□□□ -0.28
MSH2-202ENST00000406134 MYOM2P54296 1465 aa13.27□□□□□ -0.28
MSH2-202ENST00000406134 EFCAB2Q5VUJ9 269 aa13.27□□□□□ -0.29
MSH2-202ENST00000406134 CDCA7LQ96GN5 454 aa13.27□□□□□ -0.29
MSH2-202ENST00000406134 SIGLEC1Q9BZZ2 1709 aa13.27□□□□□ -0.29
MSH2-202ENST00000406134 SHPRHQ149N8 1683 aa13.26□□□□□ -0.29
MSH2-202ENST00000406134 LMTK2Q8IWU2 1503 aa13.25□□□□□ -0.29
MSH2-202ENST00000406134 ADGRB3O60242 1522 aa13.25□□□□□ -0.29
MSH2-202ENST00000406134 ERVK-7P63135 1459 aa13.25□□□□□ -0.29
MSH2-202ENST00000406134 CC2D1BQ5T0F9 858 aaKnown RBP13.25□□□□□ -0.29
MSH2-202ENST00000406134 ASXL1Q8IXJ9 1541 aa13.24□□□□□ -0.29
MSH2-202ENST00000406134 AMER1Q5JTC6 1135 aaPredicted RBP13.24□□□□□ -0.29
MSH2-202ENST00000406134 SPAG9O60271 1321 aaKnown RBP13.23□□□□□ -0.29
MSH2-202ENST00000406134 PLEKHH1Q9ULM0 1364 aa13.23□□□□□ -0.29
MSH2-202ENST00000406134 EXOC6Q8TAG9 804 aa13.23□□□□□ -0.29
MSH2-202ENST00000406134 ADGRL1O94910 1474 aa13.23□□□□□ -0.29
MSH2-202ENST00000406134 QRICH2Q9H0J4 1663 aa13.22□□□□□ -0.29
MSH2-202ENST00000406134 ZNF521Q96K83 1311 aa13.22□□□□□ -0.29
MSH2-202ENST00000406134 TMF1P82094 1093 aa13.21□□□□□ -0.29
MSH2-202ENST00000406134 SETBP1Q9Y6X0 1596 aa13.21□□□□□ -0.29
MSH2-202ENST00000406134 RCAN3Q9UKA8 241 aa13.21□□□□□ -0.29
MSH2-202ENST00000406134 CFAP65Q6ZU64 1925 aaKnown RBP13.21□□□□□ -0.29
MSH2-202ENST00000406134 CCDC136Q96JN2 1154 aa13.2□□□□□ -0.3
MSH2-202ENST00000406134 ADGRB1O14514 1584 aa13.2□□□□□ -0.3
MSH2-202ENST00000406134 HECW2Q9P2P5 1572 aa13.2□□□□□ -0.3
MSH2-202ENST00000406134 PIK3C2GO75747 1445 aa13.2□□□□□ -0.3
MSH2-202ENST00000406134 PIK3C2BO00750 1634 aa13.2□□□□□ -0.3
MSH2-202ENST00000406134 PDE3BQ13370 1112 aa13.2□□□□□ -0.3
MSH2-202ENST00000406134 PAK3O75914 559 aaPredicted RBP13.19□□□□□ -0.3
MSH2-202ENST00000406134 ASXL2Q76L83 1435 aa13.19□□□□□ -0.3
MSH2-202ENST00000406134 ERICH6Q7L0X2 663 aa13.19□□□□□ -0.3
MSH2-202ENST00000406134 SALL2Q9Y467 1007 aaPredicted RBP13.19□□□□□ -0.3
MSH2-202ENST00000406134 PPP2R1AP30153 589 aa13.18□□□□□ -0.3
MSH2-202ENST00000406134 NPC1L1Q9UHC9 1359 aa13.18□□□□□ -0.3
MSH2-202ENST00000406134 ADAMTS8Q9UP79 889 aa13.18□□□□□ -0.3
MSH2-202ENST00000406134 ARHGEF28Q8N1W1 1705 aaKnown RBP13.17□□□□□ -0.3
MSH2-202ENST00000406134 USP32Q8NFA0 1604 aa13.17□□□□□ -0.3
MSH2-202ENST00000406134 CAMSAP1Q5T5Y3 1602 aa13.17□□□□□ -0.3
MSH2-202ENST00000406134 VIRMAQ69YN4 1812 aaKnown RBP13.17□□□□□ -0.3
MSH2-202ENST00000406134 ADGRF5Q8IZF2 1346 aa13.16□□□□□ -0.3
MSH2-202ENST00000406134 MYO5BQ9ULV0 1848 aa13.16□□□□□ -0.3
MSH2-202ENST00000406134 ZNF518AQ6AHZ1 1483 aa13.16□□□□□ -0.3
MSH2-202ENST00000406134 PLIN1O60240 522 aa13.15□□□□□ -0.3
MSH2-202ENST00000406134 CFAP74Q9C0B2 1584 aa13.15□□□□□ -0.3
MSH2-202ENST00000406134 C20orf194Q5TEA3 1177 aa13.14□□□□□ -0.31
MSH2-202ENST00000406134 DUSP27Q5VZP5 1158 aa13.13□□□□□ -0.31
MSH2-202ENST00000406134 NPATQ14207 1427 aa13.13□□□□□ -0.31
MSH2-202ENST00000406134 SKAP1Q86WV1 359 aa13.13□□□□□ -0.31
MSH2-202ENST00000406134 CARD14Q9BXL6 1004 aa13.13□□□□□ -0.31
MSH2-202ENST00000406134 RICTORQ6R327 1708 aa13.12□□□□□ -0.31
MSH2-202ENST00000406134 TRMT2AQ8IZ69 625 aaKnown RBP13.12□□□□□ -0.31
MSH2-202ENST00000406134 ABCC3O15438 1527 aa13.12□□□□□ -0.31
MSH2-202ENST00000406134 POGZQ7Z3K3 1410 aa13.12□□□□□ -0.31
MSH2-202ENST00000406134 CFAP70Q5T0N1 1121 aa13.12□□□□□ -0.31
MSH2-202ENST00000406134 STAC3Q96MF2 364 aa13.12□□□□□ -0.31
MSH2-202ENST00000406134 GLI2P10070 1586 aa13.11□□□□□ -0.31
MSH2-202ENST00000406134 KDM2BQ8NHM5 1336 aa13.11□□□□□ -0.31
MSH2-202ENST00000406134 SBNO2Q9Y2G9 1366 aa13.11□□□□□ -0.31
MSH2-202ENST00000406134 KIF3BO15066 747 aa13.11□□□□□ -0.31
MSH2-202ENST00000406134 NEXMIFQ5QGS0 1516 aa13.1□□□□□ -0.31
MSH2-202ENST00000406134 CRBNQ96SW2 442 aa13.1□□□□□ -0.31
MSH2-202ENST00000406134 SPINK5Q9NQ38 1064 aaPredicted RBP13.1□□□□□ -0.31
MSH2-202ENST00000406134 NOS1P29475 1434 aa13.1□□□□□ -0.31
MSH2-202ENST00000406134 MLH3Q9UHC1 1453 aa13.1□□□□□ -0.31
MSH2-202ENST00000406134 IQSEC2Q5JU85 1478 aa13.1□□□□□ -0.31
MSH2-202ENST00000406134 NOP58Q9Y2X3 529 aaKnown RBP13.09□□□□□ -0.31
MSH2-202ENST00000406134 DIP2CQ9Y2E4 1556 aa13.09□□□□□ -0.31
MSH2-202ENST00000406134 KANK1Q14678 1352 aa13.09□□□□□ -0.31
MSH2-202ENST00000406134 EIF3AQ14152 1382 aaKnown RBP13.08□□□□□ -0.31
MSH2-202ENST00000406134 TULP4Q9NRJ4 1543 aa13.08□□□□□ -0.32
MSH2-202ENST00000406134 DMRT2Q9Y5R5 561 aa13.07□□□□□ -0.32
MSH2-202ENST00000406134 IPO9Q96P70 1041 aaKnown RBP13.07□□□□□ -0.32
MSH2-202ENST00000406134 KNSTRNQ9Y448 316 aa13.07□□□□□ -0.32
MSH2-202ENST00000406134 BACH2Q9BYV9 841 aa13.06□□□□□ -0.32
MSH2-202ENST00000406134 ANKRD26Q9UPS8 1709 aa13.05□□□□□ -0.32
MSH2-202ENST00000406134 SLFN5Q08AF3 891 aa13.05□□□□□ -0.32
MSH2-202ENST00000406134 TCERG1O14776 1098 aaKnown RBP13.04□□□□□ -0.32
MSH2-202ENST00000406134 PDE4AP27815 886 aa13.03□□□□□ -0.32
MSH2-202ENST00000406134 CLTCQ00610 1675 aaKnown RBP13.03□□□□□ -0.32
MSH2-202ENST00000406134 ADGRB2O60241 1585 aa13.03□□□□□ -0.32
MSH2-202ENST00000406134 PREX1Q8TCU6 1659 aa13.03□□□□□ -0.32
MSH2-202ENST00000406134 NKTRP30414 1462 aaKnown RBP13.02□□□□□ -0.32
MSH2-202ENST00000406134 CCDC146Q8IYE0 955 aa13.02□□□□□ -0.33
MSH2-202ENST00000406134 TMEM131LA2VDJ0 1609 aa13.02□□□□□ -0.33
MSH2-202ENST00000406134 CDCA8Q53HL2 280 aa13.02□□□□□ -0.33
MSH2-202ENST00000406134 POLR3AO14802 1390 aaPredicted RBP13.02□□□□□ -0.33
MSH2-202ENST00000406134 MS4A1P11836 297 aa13.01□□□□□ -0.33
MSH2-202ENST00000406134 CD109Q6YHK3 1445 aa13□□□□□ -0.33
MSH2-202ENST00000406134 NSD3Q9BZ95 1437 aa13□□□□□ -0.33
MSH2-202ENST00000406134 SETD1AO15047 1707 aaKnown RBP13□□□□□ -0.33
MSH2-202ENST00000406134 C14orf93Q9H972 538 aaKnown RBP12.99□□□□□ -0.33
MSH2-202ENST00000406134 GOLGA2Q08379 1002 aa12.99□□□□□ -0.33
MSH2-202ENST00000406134 WDR43Q15061 677 aaKnown RBP eCLIP12.98□□□□□ -0.33
MSH2-202ENST00000406134 APAF1O14727 1248 aa12.98□□□□□ -0.33
MSH2-202ENST00000406134 PHF23Q9BUL5 403 aaPredicted RBP12.97□□□□□ -0.33
MSH2-202ENST00000406134 CENPJQ9HC77 1338 aaPredicted RBP12.97□□□□□ -0.33
MSH2-202ENST00000406134 COL3A1P02461 1466 aaPredicted RBP12.96□□□□□ -0.33
MSH2-202ENST00000406134 NEO1Q92859 1461 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms