RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 NISCHQ9Y2I1 1504 aa21.03■□□□□ 0.96
MSH2-202ENST00000406134 CCDC180Q9P1Z9 1646 aa18.03■□□□□ 0.48
MSH2-202ENST00000406134 ZCCHC6Q5VYS8 1495 aaKnown RBP17.85■□□□□ 0.45
MSH2-202ENST00000406134 SHROOM4Q9ULL8 1493 aa17.67■□□□□ 0.42
MSH2-202ENST00000406134 DCAF1Q9Y4B6 1507 aa17.33■□□□□ 0.36
MSH2-202ENST00000406134 SUPT5HO00267 1087 aaKnown RBP17.2■□□□□ 0.34
MSH2-202ENST00000406134 MYO15BQ96JP2 1530 aa17.09■□□□□ 0.33
MSH2-202ENST00000406134 DCAF8L2P0C7V8 631 aa16.93■□□□□ 0.3
MSH2-202ENST00000406134 CHIC1Q5VXU3 224 aa16.9■□□□□ 0.3
MSH2-202ENST00000406134 ABCC9O60706 1549 aa16.89■□□□□ 0.29
MSH2-202ENST00000406134 SCRIBQ14160 1630 aa16.76■□□□□ 0.27
MSH2-202ENST00000406134 RSF1Q96T23 1441 aaPredicted RBP16.59■□□□□ 0.25
MSH2-202ENST00000406134 RB1CC1Q8TDY2 1594 aa16.54■□□□□ 0.24
MSH2-202ENST00000406134 NACADO15069 1562 aa16.52■□□□□ 0.24
MSH2-202ENST00000406134 CECR2Q9BXF3 1484 aa16.4■□□□□ 0.22
MSH2-202ENST00000406134 MROH2BQ7Z745 1585 aa16.37■□□□□ 0.21
MSH2-202ENST00000406134 LOC105371045A0A1W2PR82 267 aa16.35■□□□□ 0.21
MSH2-202ENST00000406134 WIZO95785 1651 aa16.35■□□□□ 0.21
MSH2-202ENST00000406134 UNC13AQ9UPW8 1703 aa16.33■□□□□ 0.21
MSH2-202ENST00000406134 HRCP23327 699 aa16.32■□□□□ 0.2
MSH2-202ENST00000406134 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
MSH2-202ENST00000406134 BAZ1AQ9NRL2 1556 aaPredicted RBP16.25■□□□□ 0.19
MSH2-202ENST00000406134 PCGF6Q9BYE7 350 aa16.22■□□□□ 0.19
MSH2-202ENST00000406134 SMARCA4P51532 1647 aa16.08■□□□□ 0.17
MSH2-202ENST00000406134 TOP2AP11388 1531 aaKnown RBP16.03■□□□□ 0.16
MSH2-202ENST00000406134 TRIM41Q8WV44 630 aa16.02■□□□□ 0.16
MSH2-202ENST00000406134 PPARGC1BQ86YN6 1023 aaKnown RBP16.02■□□□□ 0.15
MSH2-202ENST00000406134 SMARCA2P51531 1590 aa15.99■□□□□ 0.15
MSH2-202ENST00000406134 BICRAQ9NZM4 1560 aa15.98■□□□□ 0.15
MSH2-202ENST00000406134 TRIM26Q12899 539 aaPredicted RBP15.95■□□□□ 0.14
MSH2-202ENST00000406134 CCDC88BA6NC98 1476 aa15.91■□□□□ 0.14
MSH2-202ENST00000406134 ABCC8Q09428 1581 aa15.91■□□□□ 0.14
MSH2-202ENST00000406134 FAM9AQ8IZU1 332 aaPredicted RBP15.86■□□□□ 0.13
MSH2-202ENST00000406134 PEG3Q9GZU2 1588 aa15.84■□□□□ 0.13
MSH2-202ENST00000406134 EHMT2Q96KQ7 1210 aa15.69■□□□□ 0.1
MSH2-202ENST00000406134 SOGA1O94964 1423 aa15.68■□□□□ 0.1
MSH2-202ENST00000406134 RUSC2Q8N2Y8 1516 aa15.67■□□□□ 0.1
MSH2-202ENST00000406134 SYNJ1O43426 1573 aa15.63■□□□□ 0.09
MSH2-202ENST00000406134 WRNQ14191 1432 aaPredicted RBP eCLIP15.61■□□□□ 0.09
MSH2-202ENST00000406134 PABPN1Q86U42 306 aaKnown RBP eCLIP15.59■□□□□ 0.09
MSH2-202ENST00000406134 ATAD2BQ9ULI0 1458 aa15.57■□□□□ 0.08
MSH2-202ENST00000406134 CEP162Q5TB80 1403 aa15.55■□□□□ 0.08
MSH2-202ENST00000406134 EEA1Q15075 1411 aa15.51■□□□□ 0.07
MSH2-202ENST00000406134 TNIKQ9UKE5 1360 aa15.51■□□□□ 0.07
MSH2-202ENST00000406134 KIF21BO75037 1637 aa15.5■□□□□ 0.07
MSH2-202ENST00000406134 ZEB1P37275 1124 aaPredicted RBP15.48■□□□□ 0.07
MSH2-202ENST00000406134 BAZ1BQ9UIG0 1483 aaKnown RBP15.45■□□□□ 0.06
MSH2-202ENST00000406134 BIVM-ERCC5R4GMW8 1640 aa15.44■□□□□ 0.06
MSH2-202ENST00000406134 GOLGA3Q08378 1498 aa15.43■□□□□ 0.06
MSH2-202ENST00000406134 TOP2BQ02880 1626 aa15.42■□□□□ 0.06
MSH2-202ENST00000406134 CSRNP3Q8WYN3 585 aa15.4■□□□□ 0.06
MSH2-202ENST00000406134 CEP164Q9UPV0 1460 aa15.34■□□□□ 0.05
MSH2-202ENST00000406134 HMGXB3Q12766 1538 aa15.34■□□□□ 0.05
MSH2-202ENST00000406134 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.31■□□□□ 0.04
MSH2-202ENST00000406134 RAPGEF2Q9Y4G8 1499 aa15.31■□□□□ 0.04
MSH2-202ENST00000406134 PRDM2Q13029 1718 aa15.3■□□□□ 0.04
MSH2-202ENST00000406134 NCAPD3P42695 1498 aa15.26■□□□□ 0.03
MSH2-202ENST00000406134 CUX1P39880 1505 aa15.25■□□□□ 0.03
MSH2-202ENST00000406134 CLIP1P30622 1438 aa15.21■□□□□ 0.03
MSH2-202ENST00000406134 ERICH3Q5RHP9 1530 aa15.21■□□□□ 0.02
MSH2-202ENST00000406134 VPS8Q8N3P4 1428 aa15.2■□□□□ 0.02
MSH2-202ENST00000406134 PRXQ9BXM0 1461 aa15.2■□□□□ 0.02
MSH2-202ENST00000406134 UBTFP17480 764 aaKnown RBP15.19■□□□□ 0.02
MSH2-202ENST00000406134 TTBK1Q5TCY1 1321 aaPredicted RBP15.19■□□□□ 0.02
MSH2-202ENST00000406134 CFTRP13569 1480 aa15.16■□□□□ 0.02
MSH2-202ENST00000406134 ARAP1Q96P48 1450 aa15.15■□□□□ 0.02
MSH2-202ENST00000406134 CCER1Q8TC90 406 aaPredicted RBP15.15■□□□□ 0.02
MSH2-202ENST00000406134 SCAF1Q9H7N4 1312 aaKnown RBP15.08■□□□□ 0
MSH2-202ENST00000406134 ARHGAP35Q9NRY4 1499 aa14.98□□□□□ -0.01
MSH2-202ENST00000406134 KIF27Q86VH2 1401 aa14.96□□□□□ -0.01
MSH2-202ENST00000406134 CC2D2AQ9P2K1 1620 aa14.95□□□□□ -0.02
MSH2-202ENST00000406134 DIEXFQ68CQ4 756 aaKnown RBP14.92□□□□□ -0.02
MSH2-202ENST00000406134 RRBP1Q9P2E9 1410 aaKnown RBP14.91□□□□□ -0.02
MSH2-202ENST00000406134 KANK4Q5T7N3 995 aaPredicted RBP14.91□□□□□ -0.02
MSH2-202ENST00000406134 HNRNPUL2Q1KMD3 747 aaKnown RBP14.9□□□□□ -0.02
MSH2-202ENST00000406134 CUX2O14529 1486 aa14.89□□□□□ -0.03
MSH2-202ENST00000406134 FGD5Q6ZNL6 1462 aa14.89□□□□□ -0.03
MSH2-202ENST00000406134 NEUROD1Q13562 356 aa14.88□□□□□ -0.03
MSH2-202ENST00000406134 IGF1RP08069 1367 aa14.88□□□□□ -0.03
MSH2-202ENST00000406134 CADPSQ9ULU8 1353 aa14.88□□□□□ -0.03
MSH2-202ENST00000406134 RANGAP1P46060 587 aaPredicted RBP14.87□□□□□ -0.03
MSH2-202ENST00000406134 WDR97A6NE52 1622 aa14.86□□□□□ -0.03
MSH2-202ENST00000406134 PELP1Q8IZL8 1130 aaKnown RBP14.86□□□□□ -0.03
MSH2-202ENST00000406134 CFAP43Q8NDM7 1665 aa14.86□□□□□ -0.03
MSH2-202ENST00000406134 ACIN1Q9UKV3 1341 aaKnown RBP14.85□□□□□ -0.03
MSH2-202ENST00000406134 DHX57Q6P158 1386 aaKnown RBP14.85□□□□□ -0.03
MSH2-202ENST00000406134 TIAM1Q13009 1591 aa14.85□□□□□ -0.03
MSH2-202ENST00000406134 ZNF316A6NFI3 1004 aaPredicted RBP14.84□□□□□ -0.03
MSH2-202ENST00000406134 MAP3K1Q13233 1512 aa14.81□□□□□ -0.04
MSH2-202ENST00000406134 DNMBPQ6XZF7 1577 aa14.8□□□□□ -0.04
MSH2-202ENST00000406134 CTTNBP2Q8WZ74 1663 aa14.79□□□□□ -0.04
MSH2-202ENST00000406134 PCF11O94913 1555 aaKnown RBP14.79□□□□□ -0.04
MSH2-202ENST00000406134 LRRIQ1Q96JM4 1722 aa14.78□□□□□ -0.04
MSH2-202ENST00000406134 FANCD2Q9BXW9 1451 aa14.78□□□□□ -0.04
MSH2-202ENST00000406134 ABCA10Q8WWZ4 1543 aa14.75□□□□□ -0.05
MSH2-202ENST00000406134 NESP48681 1621 aa14.75□□□□□ -0.05
MSH2-202ENST00000406134 MAPKBP1O60336 1514 aa14.74□□□□□ -0.05
MSH2-202ENST00000406134 TOPBP1Q92547 1522 aa14.74□□□□□ -0.05
MSH2-202ENST00000406134 POLA1P09884 1462 aaPredicted RBP14.74□□□□□ -0.05
MSH2-202ENST00000406134 CARMIL1Q5VZK9 1371 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms