RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 EHBP1L1Q8N3D4 1523 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 GRIN2AQ12879 1464 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 NUP160Q12769 1436 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 MAP3K13O43283 966 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 TRPC6Q9Y210 931 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 EFCAB3Q8N7B9 438 aa12.9□□□□□ -0.34
PTCHD4-202ENST00000398738 CEP170Q5SW79 1584 aa12.89□□□□□ -0.35
PTCHD4-202ENST00000398738 CABP2Q9NPB3 220 aa12.89□□□□□ -0.35
PTCHD4-202ENST00000398738 PHF8Q9UPP1 1060 aa12.89□□□□□ -0.35
PTCHD4-202ENST00000398738 DAPK1P53355 1430 aa12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 BRD4O60885 1362 aaPredicted RBP12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 CHRM1P11229 460 aaPredicted RBP12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 SLKQ9H2G2 1235 aaPredicted RBP12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 ABCC5O15440 1437 aa12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 MIA2Q96PC5 1412 aa12.88□□□□□ -0.35
PTCHD4-202ENST00000398738 NBPF1Q3BBV0 1214 aa12.87□□□□□ -0.35
PTCHD4-202ENST00000398738 KTN1Q86UP2 1357 aaKnown RBP12.87□□□□□ -0.35
PTCHD4-202ENST00000398738 SEMA3EO15041 775 aa12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 NUP155O75694 1391 aa12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 HECW1Q76N89 1606 aa12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 PDE3BQ13370 1112 aa12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 LRPPRCP42704 1394 aaKnown RBP12.86□□□□□ -0.35
PTCHD4-202ENST00000398738 ROCK2O75116 1388 aaKnown RBP12.85□□□□□ -0.35
PTCHD4-202ENST00000398738 PANK3Q9H999 370 aa12.85□□□□□ -0.35
PTCHD4-202ENST00000398738 ADAMTS8Q9UP79 889 aa12.85□□□□□ -0.35
PTCHD4-202ENST00000398738 BCORL1Q5H9F3 1711 aa12.85□□□□□ -0.35
PTCHD4-202ENST00000398738 PSEN1P49768 467 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 FAM161AQ3B820 660 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 EPRSP07814 1512 aaKnown RBP12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 LRRIQ1Q96JM4 1722 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 RIMBP3CA6NJZ7 1639 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 RIMBP3BA6NNM3 1639 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 RIMBP3Q9UFD9 1639 aa12.84□□□□□ -0.35
PTCHD4-202ENST00000398738 TCOF1Q13428 1488 aaKnown RBP12.83□□□□□ -0.36
PTCHD4-202ENST00000398738 CCDC146Q8IYE0 955 aa12.83□□□□□ -0.36
PTCHD4-202ENST00000398738 POGKQ9P215 609 aa12.83□□□□□ -0.36
PTCHD4-202ENST00000398738 C8orf34Q49A92 452 aa12.82□□□□□ -0.36
PTCHD4-202ENST00000398738 WDR43Q15061 677 aaKnown RBP eCLIP12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 LMOD2Q6P5Q4 547 aa12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 CENPQQ7L2Z9 268 aaPredicted RBP12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 ARID4BQ4LE39 1312 aaPredicted RBP12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 KIAA1107Q9UPP5 1409 aa12.81□□□□□ -0.36
PTCHD4-202ENST00000398738 GZF1Q9H116 711 aaPredicted RBP12.8□□□□□ -0.36
PTCHD4-202ENST00000398738 UBE2Q2Q8WVN8 375 aa12.8□□□□□ -0.36
PTCHD4-202ENST00000398738 PHF12Q96QT6 1004 aa12.8□□□□□ -0.36
PTCHD4-202ENST00000398738 CTTNBP2Q8WZ74 1663 aa12.8□□□□□ -0.36
PTCHD4-202ENST00000398738 PZPP20742 1482 aa12.79□□□□□ -0.36
PTCHD4-202ENST00000398738 PDAP1Q13442 181 aaKnown RBP12.79□□□□□ -0.36
PTCHD4-202ENST00000398738 GCC2Q8IWJ2 1684 aa12.78□□□□□ -0.36
PTCHD4-202ENST00000398738 ROCK1Q13464 1354 aa12.78□□□□□ -0.36
PTCHD4-202ENST00000398738 ARHGEF11O15085 1522 aa12.78□□□□□ -0.36
PTCHD4-202ENST00000398738 BCAR3O75815 825 aa12.78□□□□□ -0.36
PTCHD4-202ENST00000398738 CANXP27824 592 aaKnown RBP12.77□□□□□ -0.36
PTCHD4-202ENST00000398738 PER1O15534 1290 aaPredicted RBP12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 TSPY4P0CV99 314 aa12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 TSPY10P0CW01 314 aa12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 PRG4Q92954 1404 aaPredicted RBP12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 SEC24BO95487 1268 aa12.77□□□□□ -0.37
PTCHD4-202ENST00000398738 HNRNPMP52272 730 aaKnown RBP eCLIP12.77□□□□□ -0.372e-9■■■□□ 17.3
PTCHD4-202ENST00000398738 NCKAP5LQ9HCH0 1330 aa12.76□□□□□ -0.37
PTCHD4-202ENST00000398738 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.76□□□□□ -0.37
PTCHD4-202ENST00000398738 FBXO22Q8NEZ5 403 aa12.76□□□□□ -0.37
PTCHD4-202ENST00000398738 KDM2BQ8NHM5 1336 aa12.76□□□□□ -0.37
PTCHD4-202ENST00000398738 MS4A4AQ96JQ5 239 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 GOLGA2Q08379 1002 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 NEUROD2Q15784 382 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 SAMD9Q5K651 1589 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 SGIP1Q9BQI5 828 aa12.75□□□□□ -0.37
PTCHD4-202ENST00000398738 CHMP7Q8WUX9 453 aaPredicted RBP12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 ANKRD50Q9ULJ7 1429 aa12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 KIAA0586Q9BVV6 1533 aa12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 DUSP27Q5VZP5 1158 aa12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 ANKRD30AQ9BXX3 1397 aa12.74□□□□□ -0.37
PTCHD4-202ENST00000398738 IGHDP01880 384 aa12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 ZNF467Q7Z7K2 595 aaPredicted RBP12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 KNSTRNQ9Y448 316 aa12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 PARD3Q8TEW0 1356 aa12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 NAP1L5Q96NT1 182 aaPredicted RBP12.73□□□□□ -0.37
PTCHD4-202ENST00000398738 APAF1O14727 1248 aa12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 RSPH6AQ9H0K4 717 aa12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 RRAGDQ9NQL2 400 aaPredicted RBP12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 COG6Q9Y2V7 657 aa12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 PLEKHH1Q9ULM0 1364 aa12.72□□□□□ -0.37
PTCHD4-202ENST00000398738 FAM43AQ8N2R8 423 aa12.71□□□□□ -0.37
PTCHD4-202ENST00000398738 DISP3Q9P2K9 1392 aa12.71□□□□□ -0.37
PTCHD4-202ENST00000398738 PANK1Q8TE04 598 aa12.71□□□□□ -0.37
PTCHD4-202ENST00000398738 KDM5CP41229 1560 aa12.71□□□□□ -0.37
PTCHD4-202ENST00000398738 WDR70Q9NW82 654 aa12.71□□□□□ -0.38
PTCHD4-202ENST00000398738 TMF1P82094 1093 aa12.7□□□□□ -0.38
PTCHD4-202ENST00000398738 KIF12Q96FN5 646 aa12.7□□□□□ -0.38
PTCHD4-202ENST00000398738 ERCC6L2Q5T890 1561 aa12.7□□□□□ -0.38
PTCHD4-202ENST00000398738 MBD5Q9P267 1494 aa12.7□□□□□ -0.38
PTCHD4-202ENST00000398738 IQGAP2Q13576 1575 aa12.69□□□□□ -0.38
PTCHD4-202ENST00000398738 BCL2L13Q9BXK5 485 aa12.69□□□□□ -0.38
PTCHD4-202ENST00000398738 RALGAPBQ86X10 1494 aa12.69□□□□□ -0.38
PTCHD4-202ENST00000398738 PPP2R1AP30153 589 aa12.68□□□□□ -0.38
PTCHD4-202ENST00000398738 BECN1Q14457 450 aa12.68□□□□□ -0.38
PTCHD4-202ENST00000398738 PIP4P2Q8N4L2 257 aa12.68□□□□□ -0.38
PTCHD4-202ENST00000398738 CLUAP1Q96AJ1 413 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms