RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 IQSEC2Q5JU85 1478 aa10.45□□□□□ -0.74
LIMA1-202ENST00000394943 PKD2Q13563 968 aa10.45□□□□□ -0.74
LIMA1-202ENST00000394943 CCDC144AA2RUR9 1427 aa10.45□□□□□ -0.74
LIMA1-202ENST00000394943 ADGRB1O14514 1584 aa10.45□□□□□ -0.74
LIMA1-202ENST00000394943 STRCP1A6NGW2 1772 aa10.44□□□□□ -0.74
LIMA1-202ENST00000394943 FBXO31Q5XUX0 539 aaPredicted RBP10.44□□□□□ -0.74
LIMA1-202ENST00000394943 ASXL1Q8IXJ9 1541 aa10.44□□□□□ -0.74
LIMA1-202ENST00000394943 DLC1Q96QB1 1528 aa10.44□□□□□ -0.74
LIMA1-202ENST00000394943 MYT1LQ9UL68 1186 aa10.44□□□□□ -0.74
LIMA1-202ENST00000394943 CPS1P31327 1500 aa10.43□□□□□ -0.74
LIMA1-202ENST00000394943 PIK3R4Q99570 1358 aa10.43□□□□□ -0.74
LIMA1-202ENST00000394943 XIRP1Q702N8 1843 aaKnown RBP10.43□□□□□ -0.74
LIMA1-202ENST00000394943 ITGAEP38570 1179 aa10.43□□□□□ -0.74
LIMA1-202ENST00000394943 TIMELESSQ9UNS1 1208 aa10.43□□□□□ -0.74
LIMA1-202ENST00000394943 LTBP4Q8N2S1 1624 aa10.43□□□□□ -0.74
LIMA1-202ENST00000394943 SLC4A1APQ9BWU0 796 aaKnown RBP10.43□□□□□ -0.74
LIMA1-202ENST00000394943 IDI1Q13907 227 aa10.42□□□□□ -0.74
LIMA1-202ENST00000394943 TECPR2O15040 1411 aa10.42□□□□□ -0.74
LIMA1-202ENST00000394943 ADAMTS13Q76LX8 1427 aa10.42□□□□□ -0.74
LIMA1-202ENST00000394943 ALKQ9UM73 1620 aa10.42□□□□□ -0.74
LIMA1-202ENST00000394943 RIMS2Q9UQ26 1411 aa10.42□□□□□ -0.74
LIMA1-202ENST00000394943 ADGRB2O60241 1585 aa10.4□□□□□ -0.74
LIMA1-202ENST00000394943 CEBPAP49715 358 aaPredicted RBP10.39□□□□□ -0.75
LIMA1-202ENST00000394943 NCOA3Q9Y6Q9 1424 aa10.39□□□□□ -0.75
LIMA1-202ENST00000394943 NKTRP30414 1462 aaKnown RBP10.39□□□□□ -0.75
LIMA1-202ENST00000394943 MLECQ14165 292 aa10.39□□□□□ -0.75
LIMA1-202ENST00000394943 ESF1Q9H501 851 aaKnown RBP10.39□□□□□ -0.75
LIMA1-202ENST00000394943 GPRASP1Q5JY77 1395 aa10.39□□□□□ -0.75
LIMA1-202ENST00000394943 NPHP4O75161 1426 aaPredicted RBP10.38□□□□□ -0.75
LIMA1-202ENST00000394943 ARHGEF28Q8N1W1 1705 aaKnown RBP10.38□□□□□ -0.75
LIMA1-202ENST00000394943 THEMISQ8N1K5 641 aaPredicted RBP10.38□□□□□ -0.75
LIMA1-202ENST00000394943 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.37□□□□□ -0.758e-10■■■□□ 17.1
LIMA1-202ENST00000394943 PTCH1Q13635 1447 aa10.37□□□□□ -0.75
LIMA1-202ENST00000394943 RALGAPBQ86X10 1494 aa10.37□□□□□ -0.75
LIMA1-202ENST00000394943 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.36□□□□□ -0.75
LIMA1-202ENST00000394943 TRIM52Q96A61 297 aa10.35□□□□□ -0.75
LIMA1-202ENST00000394943 SIRT1Q96EB6 747 aa10.34□□□□□ -0.75
LIMA1-202ENST00000394943 FAM135BQ49AJ0 1406 aa10.32□□□□□ -0.76
LIMA1-202ENST00000394943 LTKP29376 864 aa10.31□□□□□ -0.76
LIMA1-202ENST00000394943 TBX22Q9Y458 520 aa10.31□□□□□ -0.76
LIMA1-202ENST00000394943 PTPRUQ92729 1446 aa10.31□□□□□ -0.76
LIMA1-202ENST00000394943 TOPAZ1Q8N9V7 1692 aa10.31□□□□□ -0.76
LIMA1-202ENST00000394943 NALCNQ8IZF0 1738 aa10.31□□□□□ -0.76
LIMA1-202ENST00000394943 HDGFP51858 240 aaKnown RBP10.3□□□□□ -0.76
LIMA1-202ENST00000394943 CDC42BPGQ6DT37 1551 aa10.3□□□□□ -0.76
LIMA1-202ENST00000394943 PCGF6Q9BYE7 350 aa10.3□□□□□ -0.76
LIMA1-202ENST00000394943 C14orf93Q9H972 538 aaKnown RBP10.29□□□□□ -0.76
LIMA1-202ENST00000394943 DCCP43146 1447 aa10.29□□□□□ -0.76
LIMA1-202ENST00000394943 FOXD1Q16676 465 aa10.29□□□□□ -0.76
LIMA1-202ENST00000394943 ABCC11Q96J66 1382 aa10.29□□□□□ -0.76
LIMA1-202ENST00000394943 FMN2Q9NZ56 1722 aa10.29□□□□□ -0.76
LIMA1-202ENST00000394943 ANKLE2Q86XL3 938 aa10.29□□□□□ -0.76
LIMA1-202ENST00000394943 DMRT2Q9Y5R5 561 aa10.29□□□□□ -0.76
LIMA1-202ENST00000394943 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.29□□□□□ -0.76
LIMA1-202ENST00000394943 LRPPRCP42704 1394 aaKnown RBP10.29□□□□□ -0.76
LIMA1-202ENST00000394943 VGFO15240 615 aaPredicted RBP10.28□□□□□ -0.76
LIMA1-202ENST00000394943 LRRC7Q96NW7 1537 aa10.28□□□□□ -0.76
LIMA1-202ENST00000394943 SBNO2Q9Y2G9 1366 aa10.27□□□□□ -0.77
LIMA1-202ENST00000394943 USP54Q70EL1 1684 aa10.27□□□□□ -0.77
LIMA1-202ENST00000394943 QRICH2Q9H0J4 1663 aa10.26□□□□□ -0.77
LIMA1-202ENST00000394943 ADGRF5Q8IZF2 1346 aa10.25□□□□□ -0.77
LIMA1-202ENST00000394943 USP32Q8NFA0 1604 aa10.25□□□□□ -0.77
LIMA1-202ENST00000394943 YTHDC2Q9H6S0 1430 aaKnown RBP10.24□□□□□ -0.77
LIMA1-202ENST00000394943 METP08581 1390 aa10.24□□□□□ -0.77
LIMA1-202ENST00000394943 EID1Q9Y6B2 187 aa10.24□□□□□ -0.77
LIMA1-202ENST00000394943 ITSN1Q15811 1721 aa10.23□□□□□ -0.77
LIMA1-202ENST00000394943 NCKAP5LQ9HCH0 1330 aa10.23□□□□□ -0.77
LIMA1-202ENST00000394943 TXNDC2Q86VQ3 553 aa10.22□□□□□ -0.77
LIMA1-202ENST00000394943 KCNA6P17658 529 aa10.22□□□□□ -0.77
LIMA1-202ENST00000394943 L3MBTL2Q969R5 705 aa10.22□□□□□ -0.77
LIMA1-202ENST00000394943 NHSL1Q5SYE7 1610 aa10.22□□□□□ -0.77
LIMA1-202ENST00000394943 KIF1AQ12756 1690 aa10.22□□□□□ -0.77
LIMA1-202ENST00000394943 PPP1R15AO75807 674 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-202ENST00000394943 MST1RQ04912 1400 aa10.21□□□□□ -0.78
LIMA1-202ENST00000394943 SIN3AQ96ST3 1273 aa10.2□□□□□ -0.78
LIMA1-202ENST00000394943 ADGRL3Q9HAR2 1447 aa10.2□□□□□ -0.78
LIMA1-202ENST00000394943 MYOM1P52179 1685 aa10.19□□□□□ -0.78
LIMA1-202ENST00000394943 AKAP12Q02952 1782 aa10.19□□□□□ -0.78
LIMA1-202ENST00000394943 NRKQ7Z2Y5 1582 aa10.19□□□□□ -0.78
LIMA1-202ENST00000394943 AHDC1Q5TGY3 1603 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-202ENST00000394943 PUS7Q96PZ0 661 aaKnown RBP10.18□□□□□ -0.78
LIMA1-202ENST00000394943 ANKARQ7Z5J8 1434 aa10.18□□□□□ -0.78
LIMA1-202ENST00000394943 TULP4Q9NRJ4 1543 aa10.18□□□□□ -0.78
LIMA1-202ENST00000394943 NBPF8Q3BBV2 869 aa10.18□□□□□ -0.78
LIMA1-202ENST00000394943 TONSLQ96HA7 1378 aa10.18□□□□□ -0.78
LIMA1-202ENST00000394943 HSPA2P54652 639 aa10.18□□□□□ -0.78
LIMA1-202ENST00000394943 CRYBG1Q9Y4K1 1723 aa10.17□□□□□ -0.78
LIMA1-202ENST00000394943 ROBO2Q9HCK4 1378 aa10.17□□□□□ -0.78
LIMA1-202ENST00000394943 TRPM3Q9HCF6 1732 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-202ENST00000394943 MON2Q7Z3U7 1717 aa10.16□□□□□ -0.78
LIMA1-202ENST00000394943 COL22A1Q8NFW1 1626 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-202ENST00000394943 DCAF11Q8TEB1 546 aa10.14□□□□□ -0.79
LIMA1-202ENST00000394943 MARF1Q9Y4F3 1742 aaKnown RBP10.13□□□□□ -0.79
LIMA1-202ENST00000394943 STAG3Q9UJ98 1225 aa10.13□□□□□ -0.79
LIMA1-202ENST00000394943 ALS2Q96Q42 1657 aa10.13□□□□□ -0.79
LIMA1-202ENST00000394943 MED1Q15648 1581 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-202ENST00000394943 ZNF326Q5BKZ1 582 aaKnown RBP10.12□□□□□ -0.79
LIMA1-202ENST00000394943 ATP7BP35670 1465 aa10.12□□□□□ -0.79
LIMA1-202ENST00000394943 SHPRHQ149N8 1683 aa10.12□□□□□ -0.79
LIMA1-202ENST00000394943 CFAP70Q5T0N1 1121 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms