RNA–Protein interactions for RNA: ENST00000394803.9

UBE2D3-208, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE2D3, Length 2,227 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-208ENST00000394803 SCAF11Q99590 1463 aaKnown RBP13.17□□□□□ -0.3
UBE2D3-208ENST00000394803 ARAP3Q8WWN8 1544 aa13.17□□□□□ -0.3
UBE2D3-208ENST00000394803 ERCC6L2Q5T890 1561 aa13.17□□□□□ -0.3
UBE2D3-208ENST00000394803 CENPQQ7L2Z9 268 aaPredicted RBP13.17□□□□□ -0.3
UBE2D3-208ENST00000394803 SALL2Q9Y467 1007 aaPredicted RBP13.17□□□□□ -0.3
UBE2D3-208ENST00000394803 ABCC1P33527 1531 aa13.17□□□□□ -0.3
UBE2D3-208ENST00000394803 ASXL1Q8IXJ9 1541 aa13.17□□□□□ -0.3
UBE2D3-208ENST00000394803 OSCARQ8IYS5 282 aa13.16□□□□□ -0.3
UBE2D3-208ENST00000394803 WDR7Q9Y4E6 1490 aa13.16□□□□□ -0.3
UBE2D3-208ENST00000394803 NPM2Q86SE8 214 aaKnown RBP13.15□□□□□ -0.3
UBE2D3-208ENST00000394803 CDCA7LQ96GN5 454 aa13.15□□□□□ -0.3
UBE2D3-208ENST00000394803 UHRF1BP1LA0JNW5 1464 aa13.14□□□□□ -0.31
UBE2D3-208ENST00000394803 CRBNQ96SW2 442 aa13.14□□□□□ -0.31
UBE2D3-208ENST00000394803 KDM5AP29375 1690 aaKnown RBP13.14□□□□□ -0.31
UBE2D3-208ENST00000394803 GOLGA2Q08379 1002 aa13.13□□□□□ -0.31
UBE2D3-208ENST00000394803 TET3O43151 1660 aa13.13□□□□□ -0.31
UBE2D3-208ENST00000394803 KANK1Q14678 1352 aa13.13□□□□□ -0.31
UBE2D3-208ENST00000394803 DEPDC5O75140 1603 aa13.13□□□□□ -0.31
UBE2D3-208ENST00000394803 SENP3-EIF4A1A0A087X0R7 540 aa13.13□□□□□ -0.31
UBE2D3-208ENST00000394803 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
UBE2D3-208ENST00000394803 PTPRTO14522 1441 aa13.13□□□□□ -0.31
UBE2D3-208ENST00000394803 DAXXQ9UER7 740 aaPredicted RBP13.12□□□□□ -0.31
UBE2D3-208ENST00000394803 ADAMTS8Q9UP79 889 aa13.12□□□□□ -0.31
UBE2D3-208ENST00000394803 NINLQ9Y2I6 1382 aa13.11□□□□□ -0.31
UBE2D3-208ENST00000394803 ZCCHC11Q5TAX3 1644 aaKnown RBP13.1□□□□□ -0.31
UBE2D3-208ENST00000394803 KDM2BQ8NHM5 1336 aa13.1□□□□□ -0.31
UBE2D3-208ENST00000394803 ZNF521Q96K83 1311 aa13.1□□□□□ -0.31
UBE2D3-208ENST00000394803 NEFMP07197 916 aa13.09□□□□□ -0.31
UBE2D3-208ENST00000394803 AMER1Q5JTC6 1135 aaPredicted RBP13.09□□□□□ -0.31
UBE2D3-208ENST00000394803 DUSP27Q5VZP5 1158 aa13.09□□□□□ -0.31
UBE2D3-208ENST00000394803 MYOM1P52179 1685 aa13.09□□□□□ -0.31
UBE2D3-208ENST00000394803 SPAG9O60271 1321 aaKnown RBP13.09□□□□□ -0.31
UBE2D3-208ENST00000394803 ZFYVE16Q7Z3T8 1539 aa13.08□□□□□ -0.31
UBE2D3-208ENST00000394803 PLIN1O60240 522 aa13.08□□□□□ -0.32
UBE2D3-208ENST00000394803 MYOM2P54296 1465 aa13.08□□□□□ -0.32
UBE2D3-208ENST00000394803 FAM161AQ3B820 660 aa13.08□□□□□ -0.32
UBE2D3-208ENST00000394803 CLTCL1P53675 1640 aa13.07□□□□□ -0.32
UBE2D3-208ENST00000394803 NKTRP30414 1462 aaKnown RBP13.07□□□□□ -0.32
UBE2D3-208ENST00000394803 PLEKHH1Q9ULM0 1364 aa13.06□□□□□ -0.32
UBE2D3-208ENST00000394803 SLFN5Q08AF3 891 aa13.06□□□□□ -0.32
UBE2D3-208ENST00000394803 VWDEQ8N2E2 1590 aa13.06□□□□□ -0.32
UBE2D3-208ENST00000394803 E9PSI1 815 aa13.05□□□□□ -0.32
UBE2D3-208ENST00000394803 AAMPQ13685 434 aa13.05□□□□□ -0.32
UBE2D3-208ENST00000394803 TRAPPC8Q9Y2L5 1435 aa13.04□□□□□ -0.32
UBE2D3-208ENST00000394803 MAP3K4Q9Y6R4 1608 aa13.04□□□□□ -0.32
UBE2D3-208ENST00000394803 TRMT2AQ8IZ69 625 aaKnown RBP13.04□□□□□ -0.32
UBE2D3-208ENST00000394803 INO80Q9ULG1 1556 aaPredicted RBP13.04□□□□□ -0.32
UBE2D3-208ENST00000394803 KIF1BO60333 1816 aa13.04□□□□□ -0.32
UBE2D3-208ENST00000394803 SBNO2Q9Y2G9 1366 aa13.03□□□□□ -0.32
UBE2D3-208ENST00000394803 CGNL1Q0VF96 1302 aa13.03□□□□□ -0.32
UBE2D3-208ENST00000394803 MYO3AQ8NEV4 1616 aa13.03□□□□□ -0.32
UBE2D3-208ENST00000394803 ATP7AQ04656 1500 aa13.03□□□□□ -0.32
UBE2D3-208ENST00000394803 LAS1LQ9Y4W2 734 aaKnown RBP13.03□□□□□ -0.32
UBE2D3-208ENST00000394803 PDE3AQ14432 1141 aa13.01□□□□□ -0.33
UBE2D3-208ENST00000394803 VIRMAQ69YN4 1812 aaKnown RBP13.01□□□□□ -0.33
UBE2D3-208ENST00000394803 C20orf194Q5TEA3 1177 aa13□□□□□ -0.33
UBE2D3-208ENST00000394803 IFT172Q9UG01 1749 aa13□□□□□ -0.33
UBE2D3-208ENST00000394803 ABCA9Q8IUA7 1624 aa13□□□□□ -0.33
UBE2D3-208ENST00000394803 POLR3AO14802 1390 aaPredicted RBP13□□□□□ -0.33
UBE2D3-208ENST00000394803 MAPK8IP3Q9UPT6 1336 aa13□□□□□ -0.33
UBE2D3-208ENST00000394803 ABCA6Q8N139 1617 aa12.99□□□□□ -0.33
UBE2D3-208ENST00000394803 SETBP1Q9Y6X0 1596 aa12.99□□□□□ -0.33
UBE2D3-208ENST00000394803 ZMYM3Q14202 1370 aa12.99□□□□□ -0.33
UBE2D3-208ENST00000394803 ERVK-7P63135 1459 aa12.98□□□□□ -0.33
UBE2D3-208ENST00000394803 C8orf34Q49A92 452 aa12.97□□□□□ -0.33
UBE2D3-208ENST00000394803 NCBP3Q53F19 620 aaKnown RBP12.97□□□□□ -0.33
UBE2D3-208ENST00000394803 EFCAB6Q5THR3 1501 aa12.97□□□□□ -0.33
UBE2D3-208ENST00000394803 RIMBP3CA6NJZ7 1639 aa12.97□□□□□ -0.33
UBE2D3-208ENST00000394803 RIMBP3BA6NNM3 1639 aa12.97□□□□□ -0.33
UBE2D3-208ENST00000394803 RIMBP3Q9UFD9 1639 aa12.97□□□□□ -0.33
UBE2D3-208ENST00000394803 LMTK2Q8IWU2 1503 aa12.96□□□□□ -0.33
UBE2D3-208ENST00000394803 NRXN1Q9ULB1 1477 aa12.96□□□□□ -0.33
UBE2D3-208ENST00000394803 GSE1Q14687 1217 aa12.96□□□□□ -0.33
UBE2D3-208ENST00000394803 FANCAO15360 1455 aa12.96□□□□□ -0.34
UBE2D3-208ENST00000394803 USP32Q8NFA0 1604 aa12.96□□□□□ -0.34
UBE2D3-208ENST00000394803 APAF1O14727 1248 aa12.96□□□□□ -0.34
UBE2D3-208ENST00000394803 CENPJQ9HC77 1338 aaPredicted RBP12.95□□□□□ -0.34
UBE2D3-208ENST00000394803 CANXP27824 592 aaKnown RBP12.95□□□□□ -0.34
UBE2D3-208ENST00000394803 NFKBIBQ15653 356 aa12.94□□□□□ -0.34
UBE2D3-208ENST00000394803 PMFBP1Q8TBY8 1022 aa12.94□□□□□ -0.34
UBE2D3-208ENST00000394803 BECN1Q14457 450 aa12.94□□□□□ -0.34
UBE2D3-208ENST00000394803 CYB5RLQ6IPT4 315 aa12.93□□□□□ -0.34
UBE2D3-208ENST00000394803 CCDC146Q8IYE0 955 aa12.93□□□□□ -0.34
UBE2D3-208ENST00000394803 AFAP1Q8N556 730 aa12.93□□□□□ -0.34
UBE2D3-208ENST00000394803 MROH1Q8NDA8 1641 aa12.93□□□□□ -0.34
UBE2D3-208ENST00000394803 ADGRL1O94910 1474 aa12.92□□□□□ -0.34
UBE2D3-208ENST00000394803 CLUAP1Q96AJ1 413 aa12.92□□□□□ -0.34
UBE2D3-208ENST00000394803 PUS7Q96PZ0 661 aaKnown RBP12.92□□□□□ -0.34
UBE2D3-208ENST00000394803 ADGRB3O60242 1522 aa12.92□□□□□ -0.34
UBE2D3-208ENST00000394803 KIF3BO15066 747 aa12.92□□□□□ -0.34
UBE2D3-208ENST00000394803 RGS3P49796 1198 aa12.92□□□□□ -0.34
UBE2D3-208ENST00000394803 CFAP53Q96M91 514 aa12.92□□□□□ -0.34
UBE2D3-208ENST00000394803 ZC3H13Q5T200 1668 aaKnown RBP12.92□□□□□ -0.34
UBE2D3-208ENST00000394803 RUNDC1Q96C34 613 aa12.91□□□□□ -0.34
UBE2D3-208ENST00000394803 UPF2Q9HAU5 1272 aaKnown RBP12.91□□□□□ -0.34
UBE2D3-208ENST00000394803 NSD2O96028 1365 aa12.91□□□□□ -0.34
UBE2D3-208ENST00000394803 WDR63Q8IWG1 891 aa12.9□□□□□ -0.34
UBE2D3-208ENST00000394803 RPGRIP1LQ68CZ1 1315 aa12.9□□□□□ -0.34
UBE2D3-208ENST00000394803 CFAP74Q9C0B2 1584 aa12.9□□□□□ -0.34
UBE2D3-208ENST00000394803 CFAP70Q5T0N1 1121 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms