RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 NOS1P29475 1434 aa20.5■□□□□ 0.87
GPC3-202ENST00000394299 SCAF11Q99590 1463 aaKnown RBP20.5■□□□□ 0.87
GPC3-202ENST00000394299 MYBBP1AQ9BQG0 1328 aaKnown RBP20.49■□□□□ 0.87
GPC3-202ENST00000394299 RALBP1Q15311 655 aa20.49■□□□□ 0.87
GPC3-202ENST00000394299 IRX6P78412 446 aaPredicted RBP20.49■□□□□ 0.87
GPC3-202ENST00000394299 KIF1BO60333 1816 aa20.48■□□□□ 0.87
GPC3-202ENST00000394299 TSPOAP1O95153 1857 aa20.48■□□□□ 0.87
GPC3-202ENST00000394299 GLI2P10070 1586 aa20.47■□□□□ 0.87
GPC3-202ENST00000394299 ZBED9Q6R2W3 1325 aa20.47■□□□□ 0.87
GPC3-202ENST00000394299 NEFLP07196 543 aa20.47■□□□□ 0.87
GPC3-202ENST00000394299 IQGAP1P46940 1657 aa20.46■□□□□ 0.87
GPC3-202ENST00000394299 KTN1Q86UP2 1357 aaKnown RBP20.46■□□□□ 0.87
GPC3-202ENST00000394299 TMEM132EQ6IEE7 984 aa20.45■□□□□ 0.86
GPC3-202ENST00000394299 DIP2BQ9P265 1576 aa20.45■□□□□ 0.86
GPC3-202ENST00000394299 PARD3Q8TEW0 1356 aa20.44■□□□□ 0.86
GPC3-202ENST00000394299 IDI1Q13907 227 aa20.44■□□□□ 0.86
GPC3-202ENST00000394299 MYOM2P54296 1465 aa20.44■□□□□ 0.86
GPC3-202ENST00000394299 SIGLEC1Q9BZZ2 1709 aa20.44■□□□□ 0.86
GPC3-202ENST00000394299 NEURL4Q96JN8 1562 aa20.43■□□□□ 0.86
GPC3-202ENST00000394299 ADGRB3O60242 1522 aa20.43■□□□□ 0.86
GPC3-202ENST00000394299 TRAK1Q9UPV9 953 aa20.42■□□□□ 0.86
GPC3-202ENST00000394299 FBXO31Q5XUX0 539 aaPredicted RBP20.42■□□□□ 0.86
GPC3-202ENST00000394299 BRD4O60885 1362 aaPredicted RBP20.41■□□□□ 0.86
GPC3-202ENST00000394299 CAMSAP1Q5T5Y3 1602 aa20.41■□□□□ 0.86
GPC3-202ENST00000394299 NLRP13Q86W25 1043 aa20.4■□□□□ 0.86
GPC3-202ENST00000394299 IFT172Q9UG01 1749 aa20.39■□□□□ 0.85
GPC3-202ENST00000394299 NRXN1Q9ULB1 1477 aa20.39■□□□□ 0.85
GPC3-202ENST00000394299 C14orf93Q9H972 538 aaKnown RBP20.38■□□□□ 0.85
GPC3-202ENST00000394299 EIF3AQ14152 1382 aaKnown RBP20.38■□□□□ 0.85
GPC3-202ENST00000394299 SYNMO15061 1565 aa20.37■□□□□ 0.85
GPC3-202ENST00000394299 MLECQ14165 292 aa20.37■□□□□ 0.85
GPC3-202ENST00000394299 SALL2Q9Y467 1007 aaPredicted RBP20.37■□□□□ 0.85
GPC3-202ENST00000394299 KIAA1210Q9ULL0 1709 aa20.36■□□□□ 0.85
GPC3-202ENST00000394299 KNSTRNQ9Y448 316 aa20.36■□□□□ 0.85
GPC3-202ENST00000394299 CDCA8Q53HL2 280 aa20.36■□□□□ 0.85
GPC3-202ENST00000394299 LRPPRCP42704 1394 aaKnown RBP20.36■□□□□ 0.85
GPC3-202ENST00000394299 PIK3C2GO75747 1445 aa20.35■□□□□ 0.85
GPC3-202ENST00000394299 AMER1Q5JTC6 1135 aaPredicted RBP20.34■□□□□ 0.85
GPC3-202ENST00000394299 RPGRIP1LQ68CZ1 1315 aa20.34■□□□□ 0.85
GPC3-202ENST00000394299 ARHGAP31Q2M1Z3 1444 aa20.33■□□□□ 0.84
GPC3-202ENST00000394299 ERVK-7P63135 1459 aa20.33■□□□□ 0.84
GPC3-202ENST00000394299 PPLO60437 1756 aa20.32■□□□□ 0.84
GPC3-202ENST00000394299 CENPJQ9HC77 1338 aaPredicted RBP20.32■□□□□ 0.84
GPC3-202ENST00000394299 VGFO15240 615 aaPredicted RBP20.31■□□□□ 0.84
GPC3-202ENST00000394299 ZMYM4Q5VZL5 1548 aa20.3■□□□□ 0.84
GPC3-202ENST00000394299 SLC52A1Q9NWF4 448 aa20.3■□□□□ 0.84
GPC3-202ENST00000394299 CARD14Q9BXL6 1004 aa20.29■□□□□ 0.84
GPC3-202ENST00000394299 PIK3C2BO00750 1634 aa20.29■□□□□ 0.84
GPC3-202ENST00000394299 PPP2R1AP30153 589 aa20.28■□□□□ 0.84
GPC3-202ENST00000394299 SAFB2Q14151 953 aaKnown RBP eCLIP20.28■□□□□ 0.84
GPC3-202ENST00000394299 ADGRB1O14514 1584 aa20.27■□□□□ 0.84
GPC3-202ENST00000394299 STK26Q9P289 416 aa20.27■□□□□ 0.83
GPC3-202ENST00000394299 NEXMIFQ5QGS0 1516 aa20.26■□□□□ 0.83
GPC3-202ENST00000394299 NUDCQ9Y266 331 aa20.26■□□□□ 0.83
GPC3-202ENST00000394299 MYOM1P52179 1685 aa20.25■□□□□ 0.83
GPC3-202ENST00000394299 MYT1Q01538 1121 aa20.25■□□□□ 0.83
GPC3-202ENST00000394299 SLC12A5Q9H2X9 1139 aa20.24■□□□□ 0.83
GPC3-202ENST00000394299 SMG6Q86US8 1419 aaKnown RBP20.24■□□□□ 0.83
GPC3-202ENST00000394299 ZC3H13Q5T200 1668 aaKnown RBP20.24■□□□□ 0.83
GPC3-202ENST00000394299 SETBP1Q9Y6X0 1596 aa20.23■□□□□ 0.83
GPC3-202ENST00000394299 ADAMTS8Q9UP79 889 aa20.23■□□□□ 0.83
GPC3-202ENST00000394299 KDM5AP29375 1690 aaKnown RBP20.22■□□□□ 0.83
GPC3-202ENST00000394299 PREX1Q8TCU6 1659 aa20.22■□□□□ 0.83
GPC3-202ENST00000394299 STAG3Q9UJ98 1225 aa20.22■□□□□ 0.83
GPC3-202ENST00000394299 MYO5BQ9ULV0 1848 aa20.21■□□□□ 0.83
GPC3-202ENST00000394299 ASXL1Q8IXJ9 1541 aa20.21■□□□□ 0.83
GPC3-202ENST00000394299 KIF13AQ9H1H9 1805 aa20.2■□□□□ 0.82
GPC3-202ENST00000394299 SLC24A1O60721 1099 aa20.2■□□□□ 0.82
GPC3-202ENST00000394299 SBNO2Q9Y2G9 1366 aa20.2■□□□□ 0.82
GPC3-202ENST00000394299 CDCA7LQ96GN5 454 aa20.19■□□□□ 0.82
GPC3-202ENST00000394299 TSHZ2Q9NRE2 1034 aa20.19■□□□□ 0.82
GPC3-202ENST00000394299 TMEM131LA2VDJ0 1609 aa20.18■□□□□ 0.82
GPC3-202ENST00000394299 MYO3AQ8NEV4 1616 aa20.18■□□□□ 0.82
GPC3-202ENST00000394299 CABP2Q9NPB3 220 aa20.17■□□□□ 0.82
GPC3-202ENST00000394299 CLTCQ00610 1675 aaKnown RBP20.15■□□□□ 0.82
GPC3-202ENST00000394299 AGLP35573 1532 aa20.15■□□□□ 0.82
GPC3-202ENST00000394299 QRICH2Q9H0J4 1663 aa20.15■□□□□ 0.82
GPC3-202ENST00000394299 TNNT2P45379 298 aaPredicted RBP20.14■□□□□ 0.82
GPC3-202ENST00000394299 PPP6R1Q9UPN7 881 aa20.14■□□□□ 0.81
GPC3-202ENST00000394299 ZFYVE9O95405 1425 aa20.13■□□□□ 0.81
GPC3-202ENST00000394299 NPC1L1Q9UHC9 1359 aa20.13■□□□□ 0.81
GPC3-202ENST00000394299 REREQ9P2R6 1566 aa20.12■□□□□ 0.81
GPC3-202ENST00000394299 WDR43Q15061 677 aaKnown RBP eCLIP20.12■□□□□ 0.81
GPC3-202ENST00000394299 B4GALNT3Q6L9W6 998 aa20.12■□□□□ 0.81
GPC3-202ENST00000394299 NSD3Q9BZ95 1437 aa20.11■□□□□ 0.81
GPC3-202ENST00000394299 EVC2Q86UK5 1308 aa20.11■□□□□ 0.81
GPC3-202ENST00000394299 MINK1Q8N4C8 1332 aaPredicted RBP20.11■□□□□ 0.81
GPC3-202ENST00000394299 PRAM1Q96QH2 718 aa20.11■□□□□ 0.81
GPC3-202ENST00000394299 BLMP54132 1417 aaPredicted RBP20.11■□□□□ 0.81
GPC3-202ENST00000394299 ESF1Q9H501 851 aaKnown RBP20.1■□□□□ 0.81
GPC3-202ENST00000394299 PPP4R2Q9NY27 417 aa20.1■□□□□ 0.81
GPC3-202ENST00000394299 CCDC146Q8IYE0 955 aa20.1■□□□□ 0.81
GPC3-202ENST00000394299 ZMYM3Q14202 1370 aa20.09■□□□□ 0.81
GPC3-202ENST00000394299 TULP4Q9NRJ4 1543 aa20.09■□□□□ 0.81
GPC3-202ENST00000394299 ARHGEF28Q8N1W1 1705 aaKnown RBP20.08■□□□□ 0.81
GPC3-202ENST00000394299 RNF123Q5XPI4 1314 aa20.08■□□□□ 0.8
GPC3-202ENST00000394299 POGKQ9P215 609 aa20.08■□□□□ 0.8
GPC3-202ENST00000394299 SRPK2P78362 688 aaKnown RBP20.07■□□□□ 0.8
GPC3-202ENST00000394299 A2ML1A8K2U0 1454 aa20.07■□□□□ 0.8
GPC3-202ENST00000394299 ARHGEF40Q8TER5 1519 aa20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms