RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 C2orf72A6NCS6 295 aa3.83□□□□□ -1.8
VPS54-202ENST00000354504 GTF3C3Q9Y5Q9 886 aa3.83□□□□□ -1.8
VPS54-202ENST00000354504 KIF27Q86VH2 1401 aa3.83□□□□□ -1.8
VPS54-202ENST00000354504 DPYSL4O14531 572 aa3.83□□□□□ -1.8
VPS54-202ENST00000354504 CLASP1Q7Z460 1538 aa3.83□□□□□ -1.8
VPS54-202ENST00000354504 IQGAP2Q13576 1575 aa3.83□□□□□ -1.8
VPS54-202ENST00000354504 CDC42BPBQ9Y5S2 1711 aa3.82□□□□□ -1.8
VPS54-202ENST00000354504 VARS2Q5ST30 1063 aaKnown RBP3.82□□□□□ -1.8
VPS54-202ENST00000354504 FBXW7Q969H0 707 aa3.82□□□□□ -1.8
VPS54-202ENST00000354504 MAPKBP1O60336 1514 aa3.82□□□□□ -1.8
VPS54-202ENST00000354504 SUPT6HQ7KZ85 1726 aaKnown RBP3.82□□□□□ -1.8
VPS54-202ENST00000354504 GPR37O15354 613 aa3.82□□□□□ -1.8
VPS54-202ENST00000354504 FECHP22830 423 aa3.82□□□□□ -1.8
VPS54-202ENST00000354504 ARSIQ5FYB1 569 aa3.82□□□□□ -1.8
VPS54-202ENST00000354504 ABCA8O94911 1581 aa3.81□□□□□ -1.8
VPS54-202ENST00000354504 FYCO1Q9BQS8 1478 aa3.81□□□□□ -1.8
VPS54-202ENST00000354504 ARHGEF1Q92888 912 aaKnown RBP3.81□□□□□ -1.8
VPS54-202ENST00000354504 DDX27Q96GQ7 796 aaKnown RBP3.81□□□□□ -1.8
VPS54-202ENST00000354504 WDR70Q9NW82 654 aa3.81□□□□□ -1.8
VPS54-202ENST00000354504 POLR1AO95602 1720 aaPredicted RBP3.81□□□□□ -1.8
VPS54-202ENST00000354504 GAPVD1Q14C86 1478 aa3.81□□□□□ -1.8
VPS54-202ENST00000354504 SPDYE16A6NNV3 312 aaPredicted RBP3.81□□□□□ -1.8
VPS54-202ENST00000354504 ZMYND10O75800 440 aa3.81□□□□□ -1.8
VPS54-202ENST00000354504 PHF14O94880 888 aa3.81□□□□□ -1.8
VPS54-202ENST00000354504 FOSBP53539 338 aa3.81□□□□□ -1.8
VPS54-202ENST00000354504 RBM27Q9P2N5 1060 aaKnown RBP3.8□□□□□ -1.8
VPS54-202ENST00000354504 NUP160Q12769 1436 aa3.8□□□□□ -1.8
VPS54-202ENST00000354504 ITGBL1O95965 494 aaPredicted RBP3.8□□□□□ -1.8
VPS54-202ENST00000354504 LHX6Q9UPM6 363 aa3.8□□□□□ -1.8
VPS54-202ENST00000354504 IFT140Q96RY7 1462 aa3.8□□□□□ -1.8
VPS54-202ENST00000354504 ADGBQ8N7X0 1667 aa3.8□□□□□ -1.8
VPS54-202ENST00000354504 LRRC9Q6ZRR7 1453 aa3.79□□□□□ -1.8
VPS54-202ENST00000354504 RAPGEF6Q8TEU7 1601 aa3.79□□□□□ -1.8
VPS54-202ENST00000354504 KIF14Q15058 1648 aa3.79□□□□□ -1.8
VPS54-202ENST00000354504 ADGRD1Q6QNK2 874 aa3.79□□□□□ -1.8
VPS54-202ENST00000354504 TCOF1Q13428 1488 aaKnown RBP3.79□□□□□ -1.8
VPS54-202ENST00000354504 ERCC6L2Q5T890 1561 aa3.79□□□□□ -1.8
VPS54-202ENST00000354504 PDS5BQ9NTI5 1447 aa3.79□□□□□ -1.8
VPS54-202ENST00000354504 HRCP23327 699 aa3.79□□□□□ -1.8
VPS54-202ENST00000354504 TMEM132AQ24JP5 1023 aa3.79□□□□□ -1.8
VPS54-202ENST00000354504 NECTIN2Q92692 538 aa3.79□□□□□ -1.8
VPS54-202ENST00000354504 CASKIN1Q8WXD9 1431 aa3.78□□□□□ -1.8
VPS54-202ENST00000354504 PPP1R15BQ5SWA1 713 aa3.78□□□□□ -1.8
VPS54-202ENST00000354504 POTEEQ6S8J3 1075 aa3.78□□□□□ -1.8
VPS54-202ENST00000354504 PLPP6Q8IY26 295 aa3.78□□□□□ -1.8
VPS54-202ENST00000354504 CERKQ8TCT0 537 aa3.78□□□□□ -1.8
VPS54-202ENST00000354504 GRIN2AQ12879 1464 aa3.78□□□□□ -1.8
VPS54-202ENST00000354504 HECW1Q76N89 1606 aa3.78□□□□□ -1.8
VPS54-202ENST00000354504 MAGI1Q96QZ7 1491 aaPredicted RBP3.77□□□□□ -1.81
VPS54-202ENST00000354504 CARMIL1Q5VZK9 1371 aa3.77□□□□□ -1.81
VPS54-202ENST00000354504 NEUROD2Q15784 382 aa3.77□□□□□ -1.81
VPS54-202ENST00000354504 MARVELD3Q96A59 401 aa3.77□□□□□ -1.81
VPS54-202ENST00000354504 VPS9D1Q9Y2B5 631 aa3.77□□□□□ -1.81
VPS54-202ENST00000354504 DNMT1P26358 1616 aaKnown RBP3.77□□□□□ -1.81
VPS54-202ENST00000354504 PTPRKQ15262 1439 aa3.77□□□□□ -1.81
VPS54-202ENST00000354504 FHAD1B1AJZ9 1412 aa3.77□□□□□ -1.81
VPS54-202ENST00000354504 NUP153P49790 1475 aaKnown RBP3.76□□□□□ -1.81
VPS54-202ENST00000354504 PTPN23Q9H3S7 1636 aa3.76□□□□□ -1.81
VPS54-202ENST00000354504 UPF1Q92900 1129 aaKnown RBP eCLIP3.76□□□□□ -1.81
VPS54-202ENST00000354504 KCNH8Q96L42 1107 aa3.76□□□□□ -1.81
VPS54-202ENST00000354504 PPP1R3GB7ZBB8 358 aa3.76□□□□□ -1.81
VPS54-202ENST00000354504 PREX2Q70Z35 1606 aa3.76□□□□□ -1.81
VPS54-202ENST00000354504 TRIM26Q12899 539 aaPredicted RBP3.76□□□□□ -1.81
VPS54-202ENST00000354504 REPIN1Q9BWE0 567 aaKnown RBP3.76□□□□□ -1.81
VPS54-202ENST00000354504 PHLDB1Q86UU1 1377 aa3.75□□□□□ -1.81
VPS54-202ENST00000354504 TYW1BQ6NUM6 668 aa3.75□□□□□ -1.81
VPS54-202ENST00000354504 NLRP7Q8WX94 980 aa3.75□□□□□ -1.81
VPS54-202ENST00000354504 ZBED2Q9BTP6 218 aa3.75□□□□□ -1.81
VPS54-202ENST00000354504 EHBP1L1Q8N3D4 1523 aa3.75□□□□□ -1.81
VPS54-202ENST00000354504 SYNJ2O15056 1496 aa3.75□□□□□ -1.81
VPS54-202ENST00000354504 LAPTM4AQ15012 233 aa3.75□□□□□ -1.81
VPS54-202ENST00000354504 KANK4Q5T7N3 995 aaPredicted RBP3.75□□□□□ -1.81
VPS54-202ENST00000354504 IL27Q8NEV9 243 aa3.75□□□□□ -1.81
VPS54-202ENST00000354504 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.75□□□□□ -1.81
VPS54-202ENST00000354504 ABCC10Q5T3U5 1492 aa3.75□□□□□ -1.81
VPS54-202ENST00000354504 FAM161AQ3B820 660 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 DDX12PQ92771 950 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 PHOX2BQ99453 314 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 FAM117AQ9C073 453 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 ITSN2Q9NZM3 1697 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 BCORL1Q5H9F3 1711 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 MYO5CQ9NQX4 1742 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 FHOD3Q2V2M9 1422 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 CDK13Q14004 1512 aaKnown RBP3.74□□□□□ -1.81
VPS54-202ENST00000354504 KIAA0586Q9BVV6 1533 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 ZCCHC11Q5TAX3 1644 aaKnown RBP3.74□□□□□ -1.81
VPS54-202ENST00000354504 GRXCR2A6NFK2 248 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 PTPREP23469 700 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 PDIA6Q15084 440 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 BARGINQ6ZT62 677 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 FAM9AQ8IZU1 332 aaPredicted RBP3.74□□□□□ -1.81
VPS54-202ENST00000354504 RABGEF1Q9UJ41 708 aa3.74□□□□□ -1.81
VPS54-202ENST00000354504 EPRSP07814 1512 aaKnown RBP3.74□□□□□ -1.81
VPS54-202ENST00000354504 A0A0G2JS52 829 aa3.73□□□□□ -1.81
VPS54-202ENST00000354504 CDHR5Q9HBB8 845 aa3.73□□□□□ -1.81
VPS54-202ENST00000354504 TDRD9Q8NDG6 1382 aaKnown RBP3.73□□□□□ -1.81
VPS54-202ENST00000354504 TTC37Q6PGP7 1564 aa3.73□□□□□ -1.81
VPS54-202ENST00000354504 DEPDC5O75140 1603 aa3.73□□□□□ -1.81
VPS54-202ENST00000354504 PPRC1Q5VV67 1664 aaKnown RBP3.73□□□□□ -1.81
VPS54-202ENST00000354504 SIGLEC1Q9BZZ2 1709 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms