RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 DEFB132Q7Z7B7 95 aa12.75□□□□□ -0.37
CD44-205ENST00000352818 NGLY1Q96IV0 654 aa12.75□□□□□ -0.37
CD44-205ENST00000352818 SETD5Q9C0A6 1442 aa12.75□□□□□ -0.37
CD44-205ENST00000352818 BCL9LQ86UU0 1499 aa12.74□□□□□ -0.37
CD44-205ENST00000352818 UBTFP17480 764 aaKnown RBP12.74□□□□□ -0.37
CD44-205ENST00000352818 HRCP23327 699 aa12.73□□□□□ -0.37
CD44-205ENST00000352818 NHSL1Q5SYE7 1610 aa12.73□□□□□ -0.37
CD44-205ENST00000352818 CCNB3Q8WWL7 1395 aa12.72□□□□□ -0.37
CD44-205ENST00000352818 PNPLA6Q8IY17 1366 aa12.71□□□□□ -0.37
CD44-205ENST00000352818 MROH1Q8NDA8 1641 aa12.71□□□□□ -0.37
CD44-205ENST00000352818 ATRNO75882 1429 aa12.71□□□□□ -0.38
CD44-205ENST00000352818 PSDA5PKW4 1024 aaPredicted RBP12.7□□□□□ -0.38
CD44-205ENST00000352818 PIK3C2BO00750 1634 aa12.7□□□□□ -0.38
CD44-205ENST00000352818 ADAMTS2O95450 1211 aa12.69□□□□□ -0.38
CD44-205ENST00000352818 BLMP54132 1417 aaPredicted RBP12.69□□□□□ -0.38
CD44-205ENST00000352818 VPS8Q8N3P4 1428 aa12.69□□□□□ -0.38
CD44-205ENST00000352818 NCOA3Q9Y6Q9 1424 aa12.69□□□□□ -0.38
CD44-205ENST00000352818 CADPS2Q86UW7 1296 aa12.68□□□□□ -0.38
CD44-205ENST00000352818 FNBP4Q8N3X1 1017 aaPredicted RBP12.67□□□□□ -0.38
CD44-205ENST00000352818 DDX17Q92841 729 aaKnown RBP12.67□□□□□ -0.38
CD44-205ENST00000352818 C19orf44Q9H6X5 657 aa12.67□□□□□ -0.38
CD44-205ENST00000352818 USP21Q9UK80 565 aa12.67□□□□□ -0.38
CD44-205ENST00000352818 TRPC5Q9UL62 973 aaPredicted RBP12.67□□□□□ -0.38
CD44-205ENST00000352818 ASXL1Q8IXJ9 1541 aa12.67□□□□□ -0.38
CD44-205ENST00000352818 CCDC141Q6ZP82 1450 aa12.66□□□□□ -0.38
CD44-205ENST00000352818 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.66□□□□□ -0.38
CD44-205ENST00000352818 IDI1Q13907 227 aa12.66□□□□□ -0.38
CD44-205ENST00000352818 EFCAB6Q5THR3 1501 aa12.66□□□□□ -0.38
CD44-205ENST00000352818 ARHGAP31Q2M1Z3 1444 aa12.65□□□□□ -0.38
CD44-205ENST00000352818 ATF3P18847 181 aa12.64□□□□□ -0.39
CD44-205ENST00000352818 LRRC59Q96AG4 307 aaKnown RBP12.64□□□□□ -0.39
CD44-205ENST00000352818 CFAP65Q6ZU64 1925 aaKnown RBP12.63□□□□□ -0.39
CD44-205ENST00000352818 CHD2O14647 1828 aaKnown RBP12.62□□□□□ -0.39
CD44-205ENST00000352818 CEP350Q5VT06 3117 aa12.62□□□□□ -0.39
CD44-205ENST00000352818 C14orf37Q86TY3 774 aa12.62□□□□□ -0.39
CD44-205ENST00000352818 CEP152O94986 1710 aa12.62□□□□□ -0.39
CD44-205ENST00000352818 UTRNP46939 3433 aa12.62□□□□□ -0.39
CD44-205ENST00000352818 FYCO1Q9BQS8 1478 aa12.6□□□□□ -0.39
CD44-205ENST00000352818 STAG3Q9UJ98 1225 aa12.6□□□□□ -0.39
CD44-205ENST00000352818 MST1RQ04912 1400 aa12.6□□□□□ -0.39
CD44-205ENST00000352818 SENP3-EIF4A1A0A087X0R7 540 aa12.59□□□□□ -0.39
CD44-205ENST00000352818 ZFYVE9O95405 1425 aa12.59□□□□□ -0.39
CD44-205ENST00000352818 PLEKHG1Q9ULL1 1385 aa12.58□□□□□ -0.4
CD44-205ENST00000352818 TBX22Q9Y458 520 aa12.58□□□□□ -0.4
CD44-205ENST00000352818 BCANQ96GW7 911 aa12.57□□□□□ -0.4
CD44-205ENST00000352818 GJD4Q96KN9 370 aaPredicted RBP12.57□□□□□ -0.4
CD44-205ENST00000352818 ADAMTS13Q76LX8 1427 aa12.56□□□□□ -0.4
CD44-205ENST00000352818 PTCH1Q13635 1447 aa12.55□□□□□ -0.4
CD44-205ENST00000352818 PTPRUQ92729 1446 aa12.55□□□□□ -0.4
CD44-205ENST00000352818 R3HDM1Q15032 1099 aaKnown RBP12.55□□□□□ -0.4
CD44-205ENST00000352818 RSPH4AQ5TD94 716 aa12.55□□□□□ -0.4
CD44-205ENST00000352818 ADGRB3O60242 1522 aa12.55□□□□□ -0.4
CD44-205ENST00000352818 EIF2AK4Q9P2K8 1649 aaKnown RBP12.55□□□□□ -0.4
CD44-205ENST00000352818 DCCP43146 1447 aa12.54□□□□□ -0.4
CD44-205ENST00000352818 ZNF784Q8NCA9 323 aaPredicted RBP12.54□□□□□ -0.4
CD44-205ENST00000352818 MTUS2Q5JR59 1369 aa12.54□□□□□ -0.4
CD44-205ENST00000352818 UNC13BO14795 1591 aa12.53□□□□□ -0.4
CD44-205ENST00000352818 GLI3P10071 1580 aa12.52□□□□□ -0.4
CD44-205ENST00000352818 ARHGEF5Q12774 1597 aa12.52□□□□□ -0.4
CD44-205ENST00000352818 NOS1P29475 1434 aa12.52□□□□□ -0.41
CD44-205ENST00000352818 RALGAPBQ86X10 1494 aa12.52□□□□□ -0.41
CD44-205ENST00000352818 SOS2Q07890 1332 aaPredicted RBP12.51□□□□□ -0.41
CD44-205ENST00000352818 TSPY4P0CV99 314 aa12.5□□□□□ -0.41
CD44-205ENST00000352818 TSPY10P0CW01 314 aa12.5□□□□□ -0.41
CD44-205ENST00000352818 C1QTNF8P60827 252 aa12.5□□□□□ -0.41
CD44-205ENST00000352818 SF3B2Q13435 895 aaKnown RBP12.5□□□□□ -0.41
CD44-205ENST00000352818 RIMS2Q9UQ26 1411 aa12.5□□□□□ -0.41
CD44-205ENST00000352818 MYOM2P54296 1465 aa12.5□□□□□ -0.41
CD44-205ENST00000352818 AMOTL2Q9Y2J4 779 aa12.49□□□□□ -0.41
CD44-205ENST00000352818 PIK3R4Q99570 1358 aa12.48□□□□□ -0.41
CD44-205ENST00000352818 TRPM2O94759 1503 aa12.47□□□□□ -0.41
CD44-205ENST00000352818 BRWD3Q6RI45 1802 aa12.47□□□□□ -0.41
CD44-205ENST00000352818 PPP1R15AO75807 674 aaPredicted RBP12.47□□□□□ -0.41
CD44-205ENST00000352818 EN1Q05925 392 aaPredicted RBP12.47□□□□□ -0.41
CD44-205ENST00000352818 SEPT12Q8IYM1 358 aa12.47□□□□□ -0.41
CD44-205ENST00000352818 LAMC1P11047 1609 aa12.47□□□□□ -0.41
CD44-205ENST00000352818 SPHKAPQ2M3C7 1700 aa12.45□□□□□ -0.42
CD44-205ENST00000352818 BAG6P46379 1132 aa12.45□□□□□ -0.42
CD44-205ENST00000352818 APLP2Q06481 763 aa12.45□□□□□ -0.42
CD44-205ENST00000352818 PPARGC1BQ86YN6 1023 aaKnown RBP12.45□□□□□ -0.42
CD44-205ENST00000352818 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.45□□□□□ -0.42
CD44-205ENST00000352818 COL22A1Q8NFW1 1626 aaPredicted RBP12.44□□□□□ -0.42
CD44-205ENST00000352818 LMTK2Q8IWU2 1503 aa12.44□□□□□ -0.42
CD44-205ENST00000352818 ZEB1P37275 1124 aaPredicted RBP12.44□□□□□ -0.42
CD44-205ENST00000352818 SLC52A1Q9NWF4 448 aa12.44□□□□□ -0.42
CD44-205ENST00000352818 C1orf167Q5SNV9 1468 aa12.44□□□□□ -0.42
CD44-205ENST00000352818 SLIT2O94813 1529 aa12.43□□□□□ -0.42
CD44-205ENST00000352818 EHBP1L1Q8N3D4 1523 aa12.43□□□□□ -0.42
CD44-205ENST00000352818 DUOX2Q9NRD8 1548 aa12.43□□□□□ -0.42
CD44-205ENST00000352818 ONECUT3O60422 494 aaPredicted RBP12.43□□□□□ -0.42
CD44-205ENST00000352818 UNC5CLQ8IV45 518 aa12.43□□□□□ -0.42
CD44-205ENST00000352818 ORAI2Q96SN7 254 aa12.43□□□□□ -0.42
CD44-205ENST00000352818 KRT27Q7Z3Y8 459 aa12.42□□□□□ -0.42
CD44-205ENST00000352818 ADGRL3Q9HAR2 1447 aa12.41□□□□□ -0.42
CD44-205ENST00000352818 XRN1Q8IZH2 1706 aaKnown RBP12.4□□□□□ -0.42
CD44-205ENST00000352818 CAMTA1Q9Y6Y1 1673 aa12.4□□□□□ -0.42
CD44-205ENST00000352818 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.4□□□□□ -0.43
CD44-205ENST00000352818 DISP2A7MBM2 1401 aa12.39□□□□□ -0.43
CD44-205ENST00000352818 EZH2Q15910 746 aaKnown RBP12.39□□□□□ -0.43
CD44-205ENST00000352818 TMEM131LA2VDJ0 1609 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 200.2 ms