RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 LMOD3Q0VAK6 560 aa5.91□□□□□ -1.46
CSMD3-203ENST00000343508 TERF2IPQ9NYB0 399 aa5.91□□□□□ -1.46
CSMD3-203ENST00000343508 FAM13BQ9NYF5 915 aa5.91□□□□□ -1.46
CSMD3-203ENST00000343508 CCDC184Q52MB2 194 aa5.9□□□□□ -1.46
CSMD3-203ENST00000343508 CHMP4AQ9BY43 222 aa5.9□□□□□ -1.46
CSMD3-203ENST00000343508 FGD1P98174 961 aa5.9□□□□□ -1.47
CSMD3-203ENST00000343508 RTF1Q92541 710 aaKnown RBP5.9□□□□□ -1.47
CSMD3-203ENST00000343508 ARID3AQ99856 593 aa5.9□□□□□ -1.47
CSMD3-203ENST00000343508 NKTRP30414 1462 aaKnown RBP5.9□□□□□ -1.47
CSMD3-203ENST00000343508 GCC2Q8IWJ2 1684 aa5.9□□□□□ -1.47
CSMD3-203ENST00000343508 TNNT3P45378 269 aaPredicted RBP5.9□□□□□ -1.47
CSMD3-203ENST00000343508 CCDC39Q9UFE4 941 aa5.89□□□□□ -1.47
CSMD3-203ENST00000343508 SPAG9O60271 1321 aaKnown RBP5.89□□□□□ -1.47
CSMD3-203ENST00000343508 RAD54L2Q9Y4B4 1467 aa5.89□□□□□ -1.47
CSMD3-203ENST00000343508 INTS3Q68E01 1043 aaKnown RBP5.89□□□□□ -1.47
CSMD3-203ENST00000343508 LETM1O95202 739 aaPredicted RBP5.89□□□□□ -1.47
CSMD3-203ENST00000343508 CDCA7LQ96GN5 454 aa5.89□□□□□ -1.47
CSMD3-203ENST00000343508 MCTP1Q6DN14 999 aa5.89□□□□□ -1.47
CSMD3-203ENST00000343508 GRPEL1Q9HAV7 217 aa5.89□□□□□ -1.47
CSMD3-203ENST00000343508 DIAPH3Q9NSV4 1193 aa5.89□□□□□ -1.47
CSMD3-203ENST00000343508 TRIM6-TRIM34B2RNG4 842 aa5.89□□□□□ -1.47
CSMD3-203ENST00000343508 FOXD4L1Q9NU39 408 aa5.89□□□□□ -1.47
CSMD3-203ENST00000343508 ZBTB7CA1YPR0 619 aa5.89□□□□□ -1.47
CSMD3-203ENST00000343508 EFCAB2Q5VUJ9 269 aa5.88□□□□□ -1.47
CSMD3-203ENST00000343508 BCL2L13Q9BXK5 485 aa5.88□□□□□ -1.47
CSMD3-203ENST00000343508 KIF14Q15058 1648 aa5.88□□□□□ -1.47
CSMD3-203ENST00000343508 IQGAP2Q13576 1575 aa5.88□□□□□ -1.47
CSMD3-203ENST00000343508 ADAMTS8Q9UP79 889 aa5.88□□□□□ -1.47
CSMD3-203ENST00000343508 KIF3AQ9Y496 699 aa5.88□□□□□ -1.47
CSMD3-203ENST00000343508 POLR1AO95602 1720 aaPredicted RBP5.88□□□□□ -1.47
CSMD3-203ENST00000343508 HDAC5Q9UQL6 1122 aa5.88□□□□□ -1.47
CSMD3-203ENST00000343508 C11orf95C9JLR9 678 aaPredicted RBP5.87□□□□□ -1.47
CSMD3-203ENST00000343508 CT47B1P0C2W7 299 aaPredicted RBP5.87□□□□□ -1.47
CSMD3-203ENST00000343508 PDCL3Q9H2J4 239 aa5.87□□□□□ -1.47
CSMD3-203ENST00000343508 ZNF771Q7L3S4 317 aaPredicted RBP5.87□□□□□ -1.47
CSMD3-203ENST00000343508 GPATCH3Q96I76 525 aa5.87□□□□□ -1.47
CSMD3-203ENST00000343508 EPRSP07814 1512 aaKnown RBP5.87□□□□□ -1.47
CSMD3-203ENST00000343508 GOLGA6L19H0YKK7 550 aa5.87□□□□□ -1.47
CSMD3-203ENST00000343508 ANKRD30BQ9BXX2 1392 aa5.87□□□□□ -1.47
CSMD3-203ENST00000343508 EVC2Q86UK5 1308 aa5.87□□□□□ -1.47
CSMD3-203ENST00000343508 ERBINQ96RT1 1412 aa5.87□□□□□ -1.47
CSMD3-203ENST00000343508 TPM3P06753 285 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 MCM2P49736 904 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 HDGFP51858 240 aaKnown RBP5.86□□□□□ -1.47
CSMD3-203ENST00000343508 CWC22Q9HCG8 908 aaKnown RBP5.86□□□□□ -1.47
CSMD3-203ENST00000343508 NBPF8Q3BBV2 869 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 ESPNB1AK53 854 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 HMGN5P82970 282 aaKnown RBP5.86□□□□□ -1.47
CSMD3-203ENST00000343508 POLA1P09884 1462 aaPredicted RBP5.86□□□□□ -1.47
CSMD3-203ENST00000343508 BICRAQ9NZM4 1560 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 PANK1Q8TE04 598 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 GOLGA6L1Q8N7Z2 621 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 UGGT2Q9NYU1 1516 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 RRP7AQ9Y3A4 280 aaKnown RBP5.86□□□□□ -1.47
CSMD3-203ENST00000343508 R3HCC1Q9Y3T6 440 aaKnown RBP5.86□□□□□ -1.47
CSMD3-203ENST00000343508 ABCA10Q8WWZ4 1543 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 CIZ1Q9ULV3 898 aaPredicted RBP5.86□□□□□ -1.47
CSMD3-203ENST00000343508 ADGBQ8N7X0 1667 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 APBB1O00213 710 aa5.86□□□□□ -1.47
CSMD3-203ENST00000343508 GCC1Q96CN9 775 aa5.85□□□□□ -1.47
CSMD3-203ENST00000343508 TOPBP1Q92547 1522 aa5.85□□□□□ -1.47
CSMD3-203ENST00000343508 MBD3O95983 291 aa5.85□□□□□ -1.47
CSMD3-203ENST00000343508 CHMP4CQ96CF2 233 aa5.85□□□□□ -1.47
CSMD3-203ENST00000343508 EIF2AK4Q9P2K8 1649 aaKnown RBP5.85□□□□□ -1.47
CSMD3-203ENST00000343508 PPP2R1AP30153 589 aa5.85□□□□□ -1.47
CSMD3-203ENST00000343508 MCM4P33991 863 aa5.85□□□□□ -1.47
CSMD3-203ENST00000343508 TEX35Q5T0J7 233 aa5.85□□□□□ -1.47
CSMD3-203ENST00000343508 GPS2Q13227 327 aa5.85□□□□□ -1.47
CSMD3-203ENST00000343508 STK31Q9BXU1 1019 aa5.85□□□□□ -1.47
CSMD3-203ENST00000343508 ZNF644Q9H582 1327 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-203ENST00000343508 ARHGAP5Q13017 1502 aa5.84□□□□□ -1.47
CSMD3-203ENST00000343508 C9orf84Q5VXU9 1444 aa5.84□□□□□ -1.47
CSMD3-203ENST00000343508 CCDC141Q6ZP82 1450 aa5.84□□□□□ -1.47
CSMD3-203ENST00000343508 ZSCAN30Q86W11 494 aa5.84□□□□□ -1.47
CSMD3-203ENST00000343508 GRIN2BQ13224 1484 aa5.84□□□□□ -1.47
CSMD3-203ENST00000343508 K7ELQ4 463 aaPredicted RBP5.84□□□□□ -1.47
CSMD3-203ENST00000343508 CAMSAP2Q08AD1 1489 aa5.84□□□□□ -1.47
CSMD3-203ENST00000343508 CCDC66A2RUB6 948 aa5.84□□□□□ -1.48
CSMD3-203ENST00000343508 BCAR3O75815 825 aa5.84□□□□□ -1.48
CSMD3-203ENST00000343508 AMER1Q5JTC6 1135 aaPredicted RBP5.84□□□□□ -1.48
CSMD3-203ENST00000343508 CCDC34Q96HJ3 373 aa5.84□□□□□ -1.48
CSMD3-203ENST00000343508 NAP1L2Q9ULW6 460 aaPredicted RBP5.84□□□□□ -1.48
CSMD3-203ENST00000343508 KIF3BO15066 747 aa5.84□□□□□ -1.48
CSMD3-203ENST00000343508 TAF3Q5VWG9 929 aa5.84□□□□□ -1.48
CSMD3-203ENST00000343508 WDR63Q8IWG1 891 aa5.84□□□□□ -1.48
CSMD3-203ENST00000343508 RALGAPBQ86X10 1494 aa5.84□□□□□ -1.48
CSMD3-203ENST00000343508 SLFN5Q08AF3 891 aa5.84□□□□□ -1.48
CSMD3-203ENST00000343508 GNL2Q13823 731 aaKnown RBP5.84□□□□□ -1.48
CSMD3-203ENST00000343508 LRPPRCP42704 1394 aaKnown RBP5.83□□□□□ -1.48
CSMD3-203ENST00000343508 CDC45O75419 566 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 LAMC3Q9Y6N6 1575 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 CAVIN1Q6NZI2 390 aaKnown RBP5.83□□□□□ -1.48
CSMD3-203ENST00000343508 LNPKQ9C0E8 428 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 PDZRN3Q9UPQ7 1066 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 SYNJ2O15056 1496 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 CDK13Q14004 1512 aaKnown RBP5.83□□□□□ -1.48
CSMD3-203ENST00000343508 RABEP1Q15276 862 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 JPH4Q96JJ6 628 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 CLCN1P35523 988 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 SAFB2Q14151 953 aaKnown RBP eCLIP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms