RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C POP4P38336 279 aa0.36□□□□□ -2.35
PCF11YDR228C VMA22P38784 181 aa0.36□□□□□ -2.35
PCF11YDR228C CWC27Q02770 301 aa0.36□□□□□ -2.35
PCF11YDR228C RCE1Q03530 315 aa0.36□□□□□ -2.35
PCF11YDR228C YMD8Q03697 442 aa0.36□□□□□ -2.35
PCF11YDR228C GPM2Q12008 311 aa0.36□□□□□ -2.35
PCF11YDR228C LSO2Q3E772 92 aaKnown RBP0.36□□□□□ -2.35
PCF11YDR228C TSC3Q3E790 80 aa0.36□□□□□ -2.35
PCF11YDR228C OM45P16547 393 aa0.35□□□□□ -2.35
PCF11YDR228C MRPL28P36527 147 aa0.35□□□□□ -2.35
PCF11YDR228C DOG2P38773 246 aa0.35□□□□□ -2.35
PCF11YDR228C YNL247WP53852 767 aaKnown RBP0.35□□□□□ -2.35
PCF11YDR228C YDR248CQ03786 193 aa0.35□□□□□ -2.35
PCF11YDR228C YLR236CA0A023PZG4 107 aa0.35□□□□□ -2.35
PCF11YDR228C ATG22P25568 528 aa0.35□□□□□ -2.35
PCF11YDR228C GVP36P40531 326 aaKnown RBP0.35□□□□□ -2.35
PCF11YDR228C SNZ1Q03148 297 aa0.35□□□□□ -2.35
PCF11YDR228C YOR029WQ12243 111 aa0.35□□□□□ -2.35
PCF11YDR228C TUS1Q06412 1307 aa0.34□□□□□ -2.35
PCF11YDR228C SEC11P15367 167 aa0.34□□□□□ -2.36
PCF11YDR228C CDC10P25342 322 aaKnown RBP0.34□□□□□ -2.36
PCF11YDR228C TIM9O74700 87 aa0.33□□□□□ -2.36
PCF11YDR228C RPO26P20435 155 aa0.33□□□□□ -2.36
PCF11YDR228C SEC17P32602 292 aa0.33□□□□□ -2.36
PCF11YDR228C KRE28Q04431 385 aa0.33□□□□□ -2.36
PCF11YDR228C YOL160WQ08321 113 aa0.33□□□□□ -2.36
PCF11YDR228C MCP1Q12106 302 aa0.33□□□□□ -2.36
PCF11YDR228C SPT3P06844 337 aa0.33□□□□□ -2.36
PCF11YDR228C RPT5P33297 434 aaKnown RBP0.33□□□□□ -2.36
PCF11YDR228C BCY1P07278 416 aaKnown RBP0.32□□□□□ -2.36
PCF11YDR228C NTF2P33331 125 aaKnown RBP0.32□□□□□ -2.36
PCF11YDR228C TRM9P49957 279 aa0.32□□□□□ -2.36
PCF11YDR228C ATG31Q12421 196 aa0.32□□□□□ -2.36
PCF11YDR228C SIR2P06700 562 aa0.31□□□□□ -2.36
PCF11YDR228C YBR285WP38354 144 aa0.31□□□□□ -2.36
PCF11YDR228C YER034WP40022 185 aaKnown RBP0.31□□□□□ -2.36
PCF11YDR228C EAF6P47128 113 aa0.31□□□□□ -2.36
PCF11YDR228C CUE4Q04201 117 aaPredicted RBP0.31□□□□□ -2.36
PCF11YDR228C YMR252CQ04814 134 aa0.31□□□□□ -2.36
PCF11YDR228C KAP95Q06142 861 aaKnown RBP0.31□□□□□ -2.36
PCF11YDR228C YHR007C-AQ07074 71 aa0.31□□□□□ -2.36
PCF11YDR228C PRM8P53174 237 aa0.31□□□□□ -2.36
PCF11YDR228C RAD28Q12021 506 aa0.31□□□□□ -2.36
PCF11YDR228C HYR1P40581 163 aaKnown RBP0.3□□□□□ -2.36
PCF11YDR228C YFH7P43591 353 aa0.3□□□□□ -2.36
PCF11YDR228C NUP84P52891 726 aa0.3□□□□□ -2.36
PCF11YDR228C PAM18Q07914 168 aa0.3□□□□□ -2.36
PCF11YDR228C TDA8Q6B2U8 126 aa0.3□□□□□ -2.36
PCF11YDR228C PRP8P33334 2413 aaKnown RBP0.29□□□□□ -2.36
PCF11YDR228C TCA17P32613 152 aa0.29□□□□□ -2.36
PCF11YDR228C YEA4P40004 342 aa0.29□□□□□ -2.36
PCF11YDR228C RTT105P40063 208 aa0.29□□□□□ -2.36
PCF11YDR228C MDM35O60200 86 aa0.29□□□□□ -2.36
PCF11YDR228C UTP30P36144 274 aaKnown RBP0.29□□□□□ -2.36
PCF11YDR228C NSA1P53136 463 aaPredicted RBP0.29□□□□□ -2.36
PCF11YDR228C FAS1P07149 2051 aaKnown RBP0.28□□□□□ -2.36
PCF11YDR228C DRS2P39524 1355 aa0.28□□□□□ -2.36
PCF11YDR228C DBF2P22204 572 aa0.28□□□□□ -2.36
PCF11YDR228C MRPL25P23369 157 aa0.28□□□□□ -2.36
PCF11YDR228C CUE1P38428 203 aa0.28□□□□□ -2.36
PCF11YDR228C PRE6P40303 254 aaKnown RBP0.28□□□□□ -2.36
PCF11YDR228C YOL107WQ12239 342 aa0.28□□□□□ -2.36
PCF11YDR228C UGX2P32772 223 aa0.27□□□□□ -2.37
PCF11YDR228C YEL008WP40001 126 aa0.27□□□□□ -2.37
PCF11YDR228C LIA1P47120 325 aaKnown RBP0.27□□□□□ -2.37
PCF11YDR228C MRPL50P53724 139 aa0.27□□□□□ -2.37
PCF11YDR228C YNL134CP53912 376 aaKnown RBP0.27□□□□□ -2.37
PCF11YDR228C YDR249CQ03787 373 aa0.27□□□□□ -2.37
PCF11YDR228C RRP36Q12481 300 aaPredicted RBP0.27□□□□□ -2.37
PCF11YDR228C URA6P15700 204 aa0.27□□□□□ -2.37
PCF11YDR228C FAR7P43592 221 aa0.27□□□□□ -2.37
PCF11YDR228C SRL4Q03085 281 aa0.27□□□□□ -2.37
PCF11YDR228C DIG2Q03373 323 aaKnown RBP0.27□□□□□ -2.37
PCF11YDR228C RPL27AP0C2H6 136 aaKnown RBP0.26□□□□□ -2.37
PCF11YDR228C IDH1P28834 360 aaKnown RBP RIP-Chip data0.26□□□□□ -2.37not detected
PCF11YDR228C SKG1P36169 355 aa0.26□□□□□ -2.37
PCF11YDR228C HPA3P39979 161 aa0.26□□□□□ -2.37
PCF11YDR228C BNA6P43619 295 aa0.26□□□□□ -2.37
PCF11YDR228C CDC123Q05791 360 aa0.26□□□□□ -2.37
PCF11YDR228C YLR173WQ06247 608 aa0.26□□□□□ -2.37
PCF11YDR228C YRA1Q12159 226 aaKnown RBP0.26□□□□□ -2.37
PCF11YDR228C CDC28P00546 298 aaKnown RBP0.25□□□□□ -2.37
PCF11YDR228C URA5P13298 226 aaKnown RBP0.25□□□□□ -2.37
PCF11YDR228C ATP15P21306 62 aa0.25□□□□□ -2.37
PCF11YDR228C RPC17P47076 161 aa0.25□□□□□ -2.37
PCF11YDR228C YDR274CP87283 123 aa0.25□□□□□ -2.37
PCF11YDR228C LDB7P38210 180 aa0.24□□□□□ -2.37
PCF11YDR228C YLR460CP54007 376 aa0.24□□□□□ -2.37
PCF11YDR228C MED4Q12343 284 aa0.24□□□□□ -2.37
PCF11YDR228C YCL042WP25572 119 aa0.24□□□□□ -2.37
PCF11YDR228C RIB7P33312 244 aa0.24□□□□□ -2.37
PCF11YDR228C YPL073CP40323 161 aa0.24□□□□□ -2.37
PCF11YDR228C YGR050CP53231 118 aa0.24□□□□□ -2.37
PCF11YDR228C YLR283WQ05867 314 aa0.24□□□□□ -2.37
PCF11YDR228C RRT8Q08219 342 aa0.24□□□□□ -2.37
PCF11YDR228C COA3Q3E7B2 85 aa0.24□□□□□ -2.37
PCF11YDR228C SEC4P07560 215 aaKnown RBP0.23□□□□□ -2.37
PCF11YDR228C KSS1P14681 368 aa0.23□□□□□ -2.37
PCF11YDR228C RPB3P16370 318 aaKnown RBP0.23□□□□□ -2.37
PCF11YDR228C BET1P22804 142 aa0.23□□□□□ -2.37
Retrieved 100 of 5,963 RNA–protein pairs in 74.1 ms