RNA–Protein interactions for RNA: YDR499W

LCD1, Transcript of Essential protein required for the DNA integrity checkpoint pathways, yeast

Gene LCD1, Length 2,244 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCD1	YDR499W	LSM4	P40070	187 aa	Known RBP	0.73	□□□□□ -2.29
LCD1	YDR499W	PEP8	P40335	379 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	BMT5	P40493	336 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	YKE4	P40544	346 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	YIL001W	P40560	513 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	0.73	□□□□□ -2.29	not detected
LCD1	YDR499W	SSQ1	Q05931	657 aa	Predicted RBP	0.73	□□□□□ -2.29
LCD1	YDR499W	HEM25	Q07534	307 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	USB1	Q12208	290 aa	Known RBP	0.73	□□□□□ -2.29
LCD1	YDR499W	CDC7	P06243	507 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	YHR180W	P38868	163 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	IRC22	P40006	225 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	YER085C	P40058	173 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	RSM25	P40496	264 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	NSA1	P53136	463 aa	Predicted RBP	0.73	□□□□□ -2.29
LCD1	YDR499W	DID2	P69771	204 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	TPO4	Q12256	659 aa		0.73	□□□□□ -2.29
LCD1	YDR499W	RHO1	P06780	209 aa	Known RBP	0.72	□□□□□ -2.29
LCD1	YDR499W	DDI2	P0CH63	225 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	DDI3	P0CH64	225 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	MEI4	P29467	408 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	YHR022C	P38763	256 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	DSE2	P38844	325 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	PRM10	P42946	383 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	LIA1	P47120	325 aa	Known RBP	0.72	□□□□□ -2.29
LCD1	YDR499W	CYT2	Q00873	224 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	CDC8	P00572	216 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	PET9	P18239	318 aa	Known RBP	0.72	□□□□□ -2.29
LCD1	YDR499W	SRY1	P36007	326 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	ERG25	P53045	309 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	YML108W	Q03759	105 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	TRM12	Q04235	462 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	LPP1	Q04396	274 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	CDC123	Q05791	360 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	PSF1	Q12488	208 aa		0.72	□□□□□ -2.29
LCD1	YDR499W	REP2	P03872	296 aa		0.71	□□□□□ -2.3
LCD1	YDR499W	YPR170W-B	P0C5R9	85 aa		0.71	□□□□□ -2.3
LCD1	YDR499W	VMA6	P32366	345 aa	Known RBP	0.71	□□□□□ -2.3
LCD1	YDR499W	URA8	P38627	578 aa	Predicted RBP	0.71	□□□□□ -2.3
LCD1	YDR499W	DOG2	P38773	246 aa		0.71	□□□□□ -2.3
LCD1	YDR499W	RTC3	P38804	111 aa	Predicted RBP	0.71	□□□□□ -2.3
LCD1	YDR499W	RTR1	P40084	226 aa	Predicted RBP	0.71	□□□□□ -2.3
LCD1	YDR499W	COX15	P40086	486 aa		0.71	□□□□□ -2.3
LCD1	YDR499W	YNR062C	P53748	327 aa		0.71	□□□□□ -2.3
LCD1	YDR499W	YMD8	Q03697	442 aa		0.71	□□□□□ -2.3
LCD1	YDR499W	SPG3	Q04398	127 aa	Predicted RBP	0.71	□□□□□ -2.3
LCD1	YDR499W	DCN1	Q12395	269 aa		0.71	□□□□□ -2.3
LCD1	YDR499W	LSO2	Q3E772	92 aa	Known RBP	0.71	□□□□□ -2.3
LCD1	YDR499W	THP2	O13539	261 aa	Known RBP	0.7	□□□□□ -2.3
LCD1	YDR499W	URA6	P15700	204 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	MDH2	P22133	377 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	RPL24B	P24000	155 aa	Known RBP	0.7	□□□□□ -2.3
LCD1	YDR499W	MIC12	P38341	106 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	SVP26	P38869	228 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	VTC1	P40046	129 aa	RIP-Chip data	0.7	□□□□□ -2.3	not detected
LCD1	YDR499W	YER135C	P40082	130 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	PRE6	P40303	254 aa	Known RBP	0.7	□□□□□ -2.3
LCD1	YDR499W	AIF1	P52923	378 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	PRM8	P53174	237 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	YNL010W	P53981	241 aa	Known RBP	0.7	□□□□□ -2.3
LCD1	YDR499W	DRS2	P39524	1355 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	YMR31	P19955	123 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	PPA2	P28239	310 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	SSO1	P32867	290 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	BMH2	P34730	273 aa	Known RBP	0.7	□□□□□ -2.3
LCD1	YDR499W	AVT2	P39981	480 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	PGD1	P40356	397 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	AGE2	P40529	298 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	TIR3	P40552	269 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	RPL33B	P41056	107 aa	Known RBP	0.7	□□□□□ -2.3
LCD1	YDR499W	OTU1	P43558	301 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	MIC26	P50087	233 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	BRR6	P53062	197 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	BOL2	P53082	120 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	ALG13	P53178	202 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	FYV6	P53913	173 aa		0.7	□□□□□ -2.3
LCD1	YDR499W	CDC28	P00546	298 aa	Known RBP	0.69	□□□□□ -2.3
LCD1	YDR499W	YBR219C	P38317	127 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	ICE2	P40499	491 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	BXI1	P48558	297 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	BUD25	P85052	153 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	YDR248C	Q03786	193 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	SEY1	Q99287	776 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	RPL27B	P0C2H7	136 aa	Known RBP	0.69	□□□□□ -2.3
LCD1	YDR499W	YOL162W	P0CF19	215 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	ATG22	P25568	528 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	MSS2	P40990	351 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	YRB1	P41920	201 aa	Known RBP	0.69	□□□□□ -2.3
LCD1	YDR499W	DOC1	P53068	250 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	SML1	Q04964	104 aa		0.69	□□□□□ -2.3
LCD1	YDR499W	YLR156W	P0CE96	114 aa		0.68	□□□□□ -2.3
LCD1	YDR499W	YLR159W	P0CE97	114 aa		0.68	□□□□□ -2.3
LCD1	YDR499W	YLR161W	P0CE98	114 aa		0.68	□□□□□ -2.3
LCD1	YDR499W	DBF2	P22204	572 aa		0.68	□□□□□ -2.3
LCD1	YDR499W	PBN1	P25580	416 aa		0.68	□□□□□ -2.3
LCD1	YDR499W	APS1	P35181	156 aa		0.68	□□□□□ -2.3
LCD1	YDR499W	POP4	P38336	279 aa		0.68	□□□□□ -2.3
LCD1	YDR499W	ERG28	P40030	148 aa		0.68	□□□□□ -2.3
LCD1	YDR499W	FAR7	P43592	221 aa		0.68	□□□□□ -2.3
LCD1	YDR499W	NUP57	P48837	541 aa		0.68	□□□□□ -2.3

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