RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W YMR254CQ04838 102 aa4.03□□□□□ -1.76
ROT1YMR200W YHC1Q05900 231 aaKnown RBP4.03□□□□□ -1.76
ROT1YMR200W YOR292CQ08743 309 aa4.03□□□□□ -1.76
ROT1YMR200W BBP1Q12365 385 aa4.03□□□□□ -1.76
ROT1YMR200W RAX2Q12465 1220 aa4.03□□□□□ -1.76
ROT1YMR200W EFG1Q3E705 233 aaKnown RBP4.03□□□□□ -1.76
ROT1YMR200W HSL1P34244 1518 aa4.03□□□□□ -1.76
ROT1YMR200W SPT6P23615 1451 aaKnown RBP4.03□□□□□ -1.76
ROT1YMR200W RAD50P12753 1312 aa4.02□□□□□ -1.77
ROT1YMR200W CYC3P06182 269 aa4.02□□□□□ -1.77
ROT1YMR200W APS1P35181 156 aa4.02□□□□□ -1.77
ROT1YMR200W MTC4P38335 694 aaKnown RBP4.02□□□□□ -1.77
ROT1YMR200W NVJ1P38881 321 aa4.02□□□□□ -1.77
ROT1YMR200W YJL213WP40896 331 aa4.02□□□□□ -1.77
ROT1YMR200W EGT2P42835 1041 aa4.02□□□□□ -1.77
ROT1YMR200W SNX4P47057 423 aa4.02□□□□□ -1.77
ROT1YMR200W YNL046WP53956 172 aa4.02□□□□□ -1.77
ROT1YMR200W YPD1Q07688 167 aa4.02□□□□□ -1.77
ROT1YMR200W YLR361C-AQ3E795 98 aa4.02□□□□□ -1.77
ROT1YMR200W YDL085C-AQ3E7B7 68 aaKnown RBP4.02□□□□□ -1.77
ROT1YMR200W SWI1P09547 1314 aa4.01□□□□□ -1.77
ROT1YMR200W TRP1P00912 224 aa4.01□□□□□ -1.77
ROT1YMR200W HHF1P02309 103 aaKnown RBP4.01□□□□□ -1.77
ROT1YMR200W MCK1P21965 375 aaKnown RBP4.01□□□□□ -1.77
ROT1YMR200W EPT1P22140 391 aa4.01□□□□□ -1.77
ROT1YMR200W SCO1P23833 295 aa4.01□□□□□ -1.77
ROT1YMR200W SOL2P37262 315 aa4.01□□□□□ -1.77
ROT1YMR200W SLM6P38343 150 aa4.01□□□□□ -1.77
ROT1YMR200W PEX17P40155 199 aa4.01□□□□□ -1.77
ROT1YMR200W RRG9P40156 214 aa4.01□□□□□ -1.77
ROT1YMR200W FAR7P43592 221 aa4.01□□□□□ -1.77
ROT1YMR200W FLC3P53121 802 aa4.01□□□□□ -1.77
ROT1YMR200W MRH4P53166 561 aa4.01□□□□□ -1.77
ROT1YMR200W YNL184CP53876 108 aa4.01□□□□□ -1.77
ROT1YMR200W FMP41P53889 259 aaKnown RBP4.01□□□□□ -1.77
ROT1YMR200W PET191Q02772 108 aa4.01□□□□□ -1.77
ROT1YMR200W YMR317WQ04893 1140 aa4.01□□□□□ -1.77
ROT1YMR200W YOR186WQ08560 144 aa4.01□□□□□ -1.77
ROT1YMR200W RRG7Q08774 242 aaPredicted RBP4.01□□□□□ -1.77
ROT1YMR200W YPL278CQ08990 100 aa4.01□□□□□ -1.77
ROT1YMR200W YPL229WQ99395 206 aa4.01□□□□□ -1.77
ROT1YMR200W PHO2P07269 559 aa4□□□□□ -1.77
ROT1YMR200W ATR1P13090 542 aa4□□□□□ -1.77
ROT1YMR200W ERD2P18414 219 aa4□□□□□ -1.77
ROT1YMR200W SEC14P24280 304 aaKnown RBP4□□□□□ -1.77
ROT1YMR200W YCR025CP25352 136 aa4□□□□□ -1.77
ROT1YMR200W CDC50P25656 391 aa4□□□□□ -1.77
ROT1YMR200W LDS1P31379 325 aa4□□□□□ -1.77
ROT1YMR200W FRM2P37261 193 aa4□□□□□ -1.77
ROT1YMR200W LSM12P38828 187 aaKnown RBP4□□□□□ -1.77
ROT1YMR200W GLE2P40066 365 aa4□□□□□ -1.77
ROT1YMR200W DIM1P41819 318 aaKnown RBP4□□□□□ -1.77
ROT1YMR200W UBC12P52491 188 aa4□□□□□ -1.77
ROT1YMR200W IMP4P53941 290 aaKnown RBP4□□□□□ -1.77
ROT1YMR200W SWP1Q02795 286 aa4□□□□□ -1.77
ROT1YMR200W YDR476CQ03362 224 aa4□□□□□ -1.77
ROT1YMR200W GOT1Q03554 138 aa4□□□□□ -1.77
ROT1YMR200W MSA1Q08471 629 aa4□□□□□ -1.77
ROT1YMR200W FDH1Q08911 376 aa4□□□□□ -1.77
ROT1YMR200W AYT1Q12226 474 aa4□□□□□ -1.77
ROT1YMR200W RPO41P13433 1351 aaKnown RBP4□□□□□ -1.77
ROT1YMR200W PSK1P31374 1356 aa4□□□□□ -1.77
ROT1YMR200W CDC8P00572 216 aa3.99□□□□□ -1.77
ROT1YMR200W CPR1P14832 162 aaKnown RBP3.99□□□□□ -1.77
ROT1YMR200W RNA14P25298 677 aaKnown RBP3.99□□□□□ -1.77
ROT1YMR200W ARN2P38724 620 aa3.99□□□□□ -1.77
ROT1YMR200W SDS23P53172 527 aa3.99□□□□□ -1.77
ROT1YMR200W YGL034CP53186 121 aa3.99□□□□□ -1.77
ROT1YMR200W LSM7P53905 115 aaKnown RBP3.99□□□□□ -1.77
ROT1YMR200W DYN2Q02647 92 aa3.99□□□□□ -1.77
ROT1YMR200W ADD37Q03233 198 aa3.99□□□□□ -1.77
ROT1YMR200W PKR1Q03880 122 aaKnown RBP3.99□□□□□ -1.77
ROT1YMR200W PLP1Q04004 230 aa3.99□□□□□ -1.77
ROT1YMR200W YOL160WQ08321 113 aa3.99□□□□□ -1.77
ROT1YMR200W SYC1Q08553 188 aaPredicted RBP3.99□□□□□ -1.77
ROT1YMR200W MHT1Q12525 324 aa3.99□□□□□ -1.77
ROT1YMR200W SEC4P07560 215 aaKnown RBP3.98□□□□□ -1.77
ROT1YMR200W MSI1P13712 422 aa3.98□□□□□ -1.77
ROT1YMR200W AAT2P23542 418 aaKnown RBP3.98□□□□□ -1.77
ROT1YMR200W YCR090CP25654 182 aaKnown RBP3.98□□□□□ -1.77
ROT1YMR200W IMP1P28627 190 aa3.98□□□□□ -1.77
ROT1YMR200W CPR5P35176 225 aa3.98□□□□□ -1.77
ROT1YMR200W TRM7P38238 310 aaKnown RBP3.98□□□□□ -1.77
ROT1YMR200W IPI1P38803 334 aaPredicted RBP3.98□□□□□ -1.77
ROT1YMR200W YNL208WP40159 199 aaKnown RBP3.98□□□□□ -1.77
ROT1YMR200W UFE1P41834 346 aa3.98□□□□□ -1.77
ROT1YMR200W COQ5P49017 307 aa3.98□□□□□ -1.77
ROT1YMR200W CLD1P53264 445 aa3.98□□□□□ -1.77
ROT1YMR200W HST4P53688 370 aa3.98□□□□□ -1.77
ROT1YMR200W GIS2P53849 153 aaKnown RBP RIP-Chip data3.98□□□□□ -1.77not detected
ROT1YMR200W HSK3P69852 69 aa3.98□□□□□ -1.77
ROT1YMR200W YPL113CQ02961 396 aa3.98□□□□□ -1.77
ROT1YMR200W YDR124WQ04608 324 aa3.98□□□□□ -1.77
ROT1YMR200W HRI1Q05905 244 aaKnown RBP3.98□□□□□ -1.77
ROT1YMR200W YLR177WQ06251 628 aa3.98□□□□□ -1.77
ROT1YMR200W SUE1Q06524 206 aa3.98□□□□□ -1.77
ROT1YMR200W TRM10Q12400 293 aa3.98□□□□□ -1.77
ROT1YMR200W RPL25P04456 142 aaKnown RBP3.97□□□□□ -1.77
ROT1YMR200W FCY2P17064 533 aa3.97□□□□□ -1.77
ROT1YMR200W ATS1P31386 333 aa3.97□□□□□ -1.77
Retrieved 100 of 5,963 RNA–protein pairs in 88.9 ms