RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	SMD1	Q02260	146 aa	Predicted RBP	3.04	□□□□□ -1.92
CTK1	YKL139W	CKA2	P19454	339 aa		3.03	□□□□□ -1.92
CTK1	YKL139W	DRE2	P36152	348 aa		3.03	□□□□□ -1.92
CTK1	YKL139W	RFC4	P40339	323 aa	Known RBP	3.03	□□□□□ -1.92
CTK1	YKL139W	HAM1	P47119	197 aa	Known RBP	3.03	□□□□□ -1.92
CTK1	YKL139W	MRH4	P53166	561 aa		3.03	□□□□□ -1.92
CTK1	YKL139W	SEI1	Q06058	285 aa		3.03	□□□□□ -1.92
CTK1	YKL139W	YPL150W	Q12152	901 aa		3.03	□□□□□ -1.92
CTK1	YKL139W	YRA1	Q12159	226 aa	Known RBP	3.03	□□□□□ -1.92
CTK1	YKL139W	YDR157W	A0A023PZE8	133 aa		3.02	□□□□□ -1.93
CTK1	YKL139W	DPB2	P24482	689 aa	Predicted RBP	3.02	□□□□□ -1.93
CTK1	YKL139W	MIC26	P50087	233 aa		3.02	□□□□□ -1.93
CTK1	YKL139W	ALG13	P53178	202 aa		3.02	□□□□□ -1.93
CTK1	YKL139W	YGL034C	P53186	121 aa		3.02	□□□□□ -1.93
CTK1	YKL139W	YMR114C	Q04471	368 aa	Known RBP	3.02	□□□□□ -1.93
CTK1	YKL139W	YMR226C	Q05016	267 aa	Known RBP	3.02	□□□□□ -1.93
CTK1	YKL139W	YPS3	Q12303	508 aa		3.02	□□□□□ -1.93
CTK1	YKL139W	YBL008W-A	Q3E821	79 aa		3.02	□□□□□ -1.93
CTK1	YKL139W	SIR4	P11978	1358 aa		3.02	□□□□□ -1.93
CTK1	YKL139W	BCY1	P07278	416 aa	Known RBP	3.01	□□□□□ -1.93
CTK1	YKL139W	MATALPHA2	P0CY08	210 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	HMLALPHA2	P0CY09	210 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	CBF1	P17106	351 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	SSO1	P32867	290 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	TAF14	P35189	244 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	CAB3	P36076	571 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	YHB1	P39676	399 aa	Known RBP	3.01	□□□□□ -1.93
CTK1	YKL139W	NIF3	P53081	288 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	GOT1	Q03554	138 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	TVP15	Q03860	143 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	YOR186W	Q08560	144 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	YBL112C	Q3E7Y4	105 aa		3.01	□□□□□ -1.93
CTK1	YKL139W	RPL28	P02406	149 aa	Known RBP	3	□□□□□ -1.93
CTK1	YKL139W	SNA3	P14359	133 aa		3	□□□□□ -1.93
CTK1	YKL139W	CUP2	P15315	225 aa		3	□□□□□ -1.93
CTK1	YKL139W	MER1	P16523	270 aa		3	□□□□□ -1.93
CTK1	YKL139W	YPK2	P18961	677 aa		3	□□□□□ -1.93
CTK1	YKL139W	YMR144W	P40214	342 aa	Known RBP	3	□□□□□ -1.93
CTK1	YKL139W	ADO1	P47143	340 aa	Known RBP	3	□□□□□ -1.93
CTK1	YKL139W	EMI1	Q04406	187 aa		3	□□□□□ -1.93
CTK1	YKL139W	YDR124W	Q04608	324 aa		3	□□□□□ -1.93
CTK1	YKL139W	HEM25	Q07534	307 aa		3	□□□□□ -1.93
CTK1	YKL139W	YOL019W	Q08157	551 aa		3	□□□□□ -1.93
CTK1	YKL139W	SYC1	Q08553	188 aa	Predicted RBP	3	□□□□□ -1.93
CTK1	YKL139W	YPL264C	Q08980	353 aa		3	□□□□□ -1.93
CTK1	YKL139W	YPR011C	Q12251	326 aa		3	□□□□□ -1.93
CTK1	YKL139W	DCN1	Q12395	269 aa		3	□□□□□ -1.93
CTK1	YKL139W	PAN1	P32521	1480 aa		3	□□□□□ -1.93
CTK1	YKL139W	SOD1	P00445	154 aa	Known RBP	3	□□□□□ -1.93
CTK1	YKL139W	YAK1	P14680	807 aa		3	□□□□□ -1.93
CTK1	YKL139W	PPH21	P23594	369 aa		3	□□□□□ -1.93
CTK1	YKL139W	IDH1	P28834	360 aa	Known RBP RIP-Chip data	3	□□□□□ -1.93	not detected
CTK1	YKL139W	TRR2	P38816	342 aa		3	□□□□□ -1.93
CTK1	YKL139W	YJL028W	P47062	111 aa		3	□□□□□ -1.93
CTK1	YKL139W	MCM22	P47167	239 aa		3	□□□□□ -1.93
CTK1	YKL139W	YJR149W	P47177	404 aa		3	□□□□□ -1.93
CTK1	YKL139W	MGA1	P53050	456 aa		3	□□□□□ -1.93
CTK1	YKL139W	NSA1	P53136	463 aa	Predicted RBP	3	□□□□□ -1.93
CTK1	YKL139W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3	□□□□□ -1.93	not detected
CTK1	YKL139W	YNL046W	P53956	172 aa		3	□□□□□ -1.93
CTK1	YKL139W	TIM22	Q12328	207 aa		3	□□□□□ -1.93
CTK1	YKL139W	SPT3	P06844	337 aa		2.99	□□□□□ -1.93
CTK1	YKL139W	ASF2	P32448	525 aa	Predicted RBP	2.99	□□□□□ -1.93
CTK1	YKL139W	PRX1	P34227	261 aa	Known RBP	2.99	□□□□□ -1.93
CTK1	YKL139W	TRM7	P38238	310 aa	Known RBP	2.99	□□□□□ -1.93
CTK1	YKL139W	FLC3	P53121	802 aa		2.99	□□□□□ -1.93
CTK1	YKL139W	JLP1	Q12358	412 aa		2.99	□□□□□ -1.93
CTK1	YKL139W	SWI1	P09547	1314 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	HTB1	P02293	131 aa	Known RBP	2.98	□□□□□ -1.93
CTK1	YKL139W	HTB2	P02294	131 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	APA2	P22108	325 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	SUR2	P38992	349 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	NUP57	P48837	541 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	TOS8	P53147	276 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	FYV6	P53913	173 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	SNZ1	Q03148	297 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	ECM11	Q04110	302 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	TPO4	Q12256	659 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	PRR2	Q12310	699 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	IES3	Q12345	250 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	YPL229W	Q99395	206 aa		2.98	□□□□□ -1.93
CTK1	YKL139W	NUP157	P40064	1391 aa	Known RBP	2.97	□□□□□ -1.93
CTK1	YKL139W	YEL009C-A	A0A023PZF2	135 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	URA6	P15700	204 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	ERD2	P18414	219 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	RFA3	P26755	122 aa	Known RBP	2.97	□□□□□ -1.93
CTK1	YKL139W	MID2	P36027	376 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	SSH1	P38353	490 aa	Known RBP	2.97	□□□□□ -1.93
CTK1	YKL139W	SPL2	P38839	148 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	YRB2	P40517	327 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	RSM27	P53305	110 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	HST4	P53688	370 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	YDR222W	Q04925	415 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	YLR179C	Q06252	201 aa	Known RBP	2.97	□□□□□ -1.93
CTK1	YKL139W	YPR172W	Q06608	200 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	MSA1	Q08471	629 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	RAD9	P14737	1309 aa		2.97	□□□□□ -1.93
CTK1	YKL139W	YOL163W	P0CF20	169 aa		2.96	□□□□□ -1.94
CTK1	YKL139W	ECM13	P38195	257 aa		2.96	□□□□□ -1.94
CTK1	YKL139W	IKI1	P38874	309 aa		2.96	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 14.7 ms