RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	ZTA1	P38230	334 aa	Known RBP	3.16	□□□□□ -1.9
SSM4	YIL030C	PHO90	P39535	881 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	RFC4	P40339	323 aa	Known RBP	3.16	□□□□□ -1.9
SSM4	YIL030C	VNX1	P42839	908 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	CIN2	P46670	268 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	GPI14	P47088	403 aa	Known RBP	3.16	□□□□□ -1.9
SSM4	YIL030C	MNN10	P50108	393 aa	Known RBP	3.16	□□□□□ -1.9
SSM4	YIL030C	FOL2	P51601	243 aa	Known RBP	3.16	□□□□□ -1.9
SSM4	YIL030C	YIP4	P53093	235 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	REC102	Q02721	264 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	YDR391C	Q04170	232 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	VID22	Q05934	901 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	PIB1	Q06651	286 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	RPN5	Q12250	445 aa	Known RBP	3.16	□□□□□ -1.9
SSM4	YIL030C	YLR099W-A	Q3E798	87 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	PET20	Q99373	253 aa		3.16	□□□□□ -1.9
SSM4	YIL030C	ADE8	P04161	214 aa		3.15	□□□□□ -1.9
SSM4	YIL030C	SGA1	P08019	549 aa		3.15	□□□□□ -1.9
SSM4	YIL030C	YPR170W-B	P0C5R9	85 aa		3.15	□□□□□ -1.9
SSM4	YIL030C	RPS18A	P0CX55	146 aa	Known RBP	3.15	□□□□□ -1.9
SSM4	YIL030C	RPS18B	P0CX56	146 aa	Predicted RBP	3.15	□□□□□ -1.9
SSM4	YIL030C	NAM2	P11325	894 aa		3.15	□□□□□ -1.9
SSM4	YIL030C	PRE2	P30656	287 aa	Known RBP	3.15	□□□□□ -1.9
SSM4	YIL030C	YKL187C	P34231	750 aa		3.15	□□□□□ -1.9
SSM4	YIL030C	CCS1	P40202	249 aa	Known RBP	3.15	□□□□□ -1.9
SSM4	YIL030C	ERG25	P53045	309 aa		3.15	□□□□□ -1.9
SSM4	YIL030C	CTS2	Q06350	511 aa		3.15	□□□□□ -1.9
SSM4	YIL030C	RFA1	P22336	621 aa	Known RBP	3.15	□□□□□ -1.91
SSM4	YIL030C	ADK2	P26364	225 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	EHD3	P28817	500 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	FUN26	P31381	517 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	PFS1	P38872	237 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	BRP1	P53194	125 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	TNA1	P53322	534 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	YNL140C	P53910	189 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	CSI2	Q08054	341 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	YPS3	Q12303	508 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	PRR2	Q12310	699 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	EAF3	Q12432	401 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	BOL1	Q3E793	110 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	TPI1	P00942	248 aa	Known RBP	3.15	□□□□□ -1.91
SSM4	YIL030C	ADH3	P07246	375 aa	Known RBP	3.15	□□□□□ -1.91
SSM4	YIL030C	SPS4	P09937	338 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	SAC7	P17121	654 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	FPR2	P32472	135 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	ERG1	P32476	496 aa	Known RBP	3.15	□□□□□ -1.91
SSM4	YIL030C	YPT7	P32939	208 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	SRP14	P38985	146 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	PAC2	P39937	518 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	UTP25	P40498	721 aa	Known RBP	3.15	□□□□□ -1.91
SSM4	YIL030C	YHC3	P47040	408 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	IKS1	P47042	667 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	YJR111C	P47148	283 aa	Known RBP	3.15	□□□□□ -1.91
SSM4	YIL030C	CDH1	P53197	566 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	FHN1	P53279	174 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	VPS62	P53285	467 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	YLR152C	P54072	576 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	API2	Q04413	109 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	IRC13	Q08630	104 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	YNR034W-A	Q3E841	98 aa		3.15	□□□□□ -1.91
SSM4	YIL030C	RPB3	P16370	318 aa	Known RBP	3.14	□□□□□ -1.91
SSM4	YIL030C	RNA14	P25298	677 aa	Known RBP	3.14	□□□□□ -1.91
SSM4	YIL030C	LSB5	P25369	354 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	SHB17	P36136	271 aa	Known RBP	3.14	□□□□□ -1.91
SSM4	YIL030C	MRPL4	P36517	319 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	GIM4	P40005	111 aa	Known RBP	3.14	□□□□□ -1.91
SSM4	YIL030C	AGE2	P40529	298 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	LYS5	P50113	272 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	VHT1	P53241	593 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	EGD1	Q02642	157 aa	Known RBP	3.14	□□□□□ -1.91
SSM4	YIL030C	RAD28	Q12021	506 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	RAX2	Q12465	1220 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	NHP6A	P11632	93 aa	Known RBP	3.14	□□□□□ -1.91
SSM4	YIL030C	YAL037W	P39728	267 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	UFE1	P41834	346 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	MOB2	P43563	287 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	ARG7	Q04728	441 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	TVP18	Q04767	167 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	BRX1	Q08235	291 aa	Known RBP	3.14	□□□□□ -1.91
SSM4	YIL030C	ISA2	Q12425	185 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	CYC3	P06182	269 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	PDE1	P22434	369 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	RSC6	P25632	483 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	MSK1	P32048	576 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	PRP18	P33411	251 aa	Predicted RBP	3.14	□□□□□ -1.91
SSM4	YIL030C	PAN3	P36102	679 aa	Predicted RBP	3.14	□□□□□ -1.91
SSM4	YIL030C	MRPL15	P36523	253 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	CBP4	P37267	147 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	RIP-Chip
SSM4	YIL030C	VPS52	P39904	641 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	VMA21	P41806	77 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	NIT2	P47016	307 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	PEX21	P50091	288 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	NCE101	Q02820	53 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	PAU23	Q07987	124 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	PAU17	Q12370	124 aa		3.14	□□□□□ -1.91
SSM4	YIL030C	AFR1	P33304	620 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	FMP46	P36141	133 aa	Known RBP	3.13	□□□□□ -1.91
SSM4	YIL030C	SPI1	P40092	148 aa		3.13	□□□□□ -1.91
SSM4	YIL030C	YGR269W	P40326	108 aa		3.13	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 44.9 ms