RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	YOL131W	Q08270	108 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	TCO89	Q08921	799 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	PRR2	Q12310	699 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	YLR122C	Q12312	125 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	TRM13	Q12383	476 aa		4.09	□□□□□ -1.75
PRP28	YDR243C	MRPL23	Q12487	163 aa	Predicted RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	FOL3	Q12676	427 aa	Predicted RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	RPL13A	Q12690	199 aa	Predicted RBP	4.09	□□□□□ -1.75
PRP28	YDR243C	MES1	P00958	751 aa	Known RBP	4.09	□□□□□ -1.76
PRP28	YDR243C	MSW1	P04803	379 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	PEP4	P07267	405 aa	Known RBP	4.09	□□□□□ -1.76
PRP28	YDR243C	PUP3	P25451	205 aa	Known RBP	4.09	□□□□□ -1.76
PRP28	YDR243C	ERG3	P32353	365 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	ARP2	P32381	391 aa	Known RBP	4.09	□□□□□ -1.76
PRP28	YDR243C	MRP20	P32387	263 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	BCS1	P32839	456 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	PTK1	P36002	662 aa	Predicted RBP	4.09	□□□□□ -1.76
PRP28	YDR243C	SPL2	P38839	148 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	EAF5	P39995	279 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	SHO1	P40073	367 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	COX15	P40086	486 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	MGS1	P40151	587 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	BMT5	P40493	336 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	SHR5	P41912	237 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	MOB2	P43563	287 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	GTR2	P53290	341 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	YGR250C	P53316	781 aa	Known RBP	4.09	□□□□□ -1.76
PRP28	YDR243C	YIP3	P53633	176 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	AAH1	P53909	347 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	RSM10	Q03201	203 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	GOT1	Q03554	138 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	ARA2	Q04212	335 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	CUR1	Q06469	252 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	CSI2	Q08054	341 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	NAT5	Q08689	176 aa		4.09	□□□□□ -1.76
PRP28	YDR243C	TDH2	P00358	332 aa	Known RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
PRP28	YDR243C	RPB5	P20434	215 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	YCR023C	P25351	611 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	PUT3	P25502	979 aa	Predicted RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	TIP20	P33891	701 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	DER1	P38307	211 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	ATG12	P38316	186 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	MTC4	P38335	694 aa	Known RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	TAE1	P38340	232 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	YEA6	P39953	335 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	LSM5	P40089	93 aa	Known RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	LYS12	P40495	371 aa	Known RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	PAU15	P40585	124 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	EXG2	P52911	562 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	YGL235W	P53071	178 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	SDT1	P53078	280 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	VPS73	P53142	486 aa	Known RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	SMX3	P54999	86 aa	Predicted RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	RSF1	Q05043	376 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	YLR446W	Q06204	433 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	PRP11	Q07350	266 aa	Predicted RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	IRC10	Q08118	586 aa		4.08	□□□□□ -1.76
PRP28	YDR243C	ALG6	Q12001	544 aa	Known RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	YTM1	Q12024	460 aa	Predicted RBP	4.08	□□□□□ -1.76
PRP28	YDR243C	TIM9	O74700	87 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	CDC9	P04819	755 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	RPS25B	P0C0T4	108 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	YER190C-B	P0CX94	160 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YEL077W-A	P0CX95	160 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YGR296C-B	P0CX96	160 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YPL283W-B	P0CX97	160 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YPR204C-A	P0CX98	160 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	HOM6	P31116	359 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	SKG6	P32900	734 aa	Predicted RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	SDH3	P33421	198 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YKL151C	P36059	337 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	PMU1	P36069	295 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	RIB1	P38066	345 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YHR127W	P38833	243 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	YHR177W	P38867	453 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	ASP1	P38986	381 aa	Predicted RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	PRE6	P40303	254 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	YIL060W	P40519	144 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	PRM2	P40534	656 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YCH1	P42937	148 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	IKS1	P47042	667 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YGR053C	P53234	283 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	ASI3	P53983	676 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	NUP100	Q02629	959 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	RCE1	Q03530	315 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	PLB2	Q03674	706 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YDR415C	Q04033	374 aa	Predicted RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	ERP1	Q05359	219 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	DPP1	Q05521	289 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YLR456W	Q06199	204 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	HEM25	Q07534	307 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	SHS1	Q07657	551 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YLR030W	Q07967	263 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YLR040C	Q07988	224 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	RPS25A	Q3E792	108 aa	Predicted RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	YIL177C	P40434	1758 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	YJL225C	P40889	1758 aa		4.07	□□□□□ -1.76
PRP28	YDR243C	TY1B-NL2	Q99337	1749 aa	Known RBP	4.07	□□□□□ -1.76
PRP28	YDR243C	QCR7	P00128	127 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 228.1 ms