RNA–Protein interactions for RNA: YML107C

PML39, Transcript of Protein required for nuclear retention of unspliced pre-mRNAs, yeast

Gene PML39, Length 1,005 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PML39	YML107C	SMD1	Q02260	146 aa	Predicted RBP	2.81	□□□□□ -1.96
PML39	YML107C	ABZ2	Q03266	374 aa		2.81	□□□□□ -1.96
PML39	YML107C	SNX41	Q04053	625 aa		2.81	□□□□□ -1.96
PML39	YML107C	UBX2	Q04228	584 aa		2.81	□□□□□ -1.96
PML39	YML107C	ECM19	Q06011	112 aa		2.81	□□□□□ -1.96
PML39	YML107C	PBP4	Q07362	185 aa	Known RBP	2.81	□□□□□ -1.96
PML39	YML107C	MIM1	Q08176	113 aa		2.81	□□□□□ -1.96
PML39	YML107C	VIK1	Q12045	647 aa		2.81	□□□□□ -1.96
PML39	YML107C	TFC7	Q12415	435 aa		2.81	□□□□□ -1.96
PML39	YML107C	BI3	Q9ZZW7	517 aa		2.81	□□□□□ -1.96
PML39	YML107C	IRA2	P19158	3079 aa		2.81	□□□□□ -1.96
PML39	YML107C	PDR11	P40550	1411 aa		2.8	□□□□□ -1.96
PML39	YML107C	CUP2	P15315	225 aa		2.8	□□□□□ -1.96
PML39	YML107C	PPQ1	P32945	549 aa		2.8	□□□□□ -1.96
PML39	YML107C	YKL162C	P36052	402 aa		2.8	□□□□□ -1.96
PML39	YML107C	FET3	P38993	636 aa		2.8	□□□□□ -1.96
PML39	YML107C	YFL040W	P43562	540 aa		2.8	□□□□□ -1.96
PML39	YML107C	YNR066C	P53752	436 aa		2.8	□□□□□ -1.96
PML39	YML107C	PAA1	Q12447	191 aa	Known RBP	2.8	□□□□□ -1.96
PML39	YML107C	SSN2	P38931	1420 aa		2.79	□□□□□ -1.96
PML39	YML107C	RAD7	P06779	565 aa		2.79	□□□□□ -1.96
PML39	YML107C	GCD2	P12754	651 aa	Predicted RBP	2.79	□□□□□ -1.96
PML39	YML107C	RIB7	P33312	244 aa		2.79	□□□□□ -1.96
PML39	YML107C	SOP4	P39543	234 aa	Predicted RBP	2.79	□□□□□ -1.96
PML39	YML107C	VOA1	P53262	265 aa		2.79	□□□□□ -1.96
PML39	YML107C	OKP1	P53298	406 aa		2.79	□□□□□ -1.96
PML39	YML107C	MDY2	Q12285	212 aa		2.79	□□□□□ -1.96
PML39	YML107C	TRM10	Q12400	293 aa		2.79	□□□□□ -1.96
PML39	YML107C	IZH4	Q99393	312 aa		2.79	□□□□□ -1.96
PML39	YML107C	FMP27	Q06179	2628 aa		2.79	□□□□□ -1.96
PML39	YML107C	UTP20	P35194	2493 aa	Known RBP	2.78	□□□□□ -1.96
PML39	YML107C	CAR2	P07991	424 aa	Known RBP	2.78	□□□□□ -1.96
PML39	YML107C	SAR1	P20606	190 aa	Known RBP	2.78	□□□□□ -1.96
PML39	YML107C	RPL16B	P26785	198 aa	Known RBP	2.78	□□□□□ -1.96
PML39	YML107C	RPB9	P27999	122 aa		2.78	□□□□□ -1.96
PML39	YML107C	RIB4	P50861	169 aa	Predicted RBP	2.78	□□□□□ -1.96
PML39	YML107C	PRO2	P54885	456 aa	Known RBP	2.78	□□□□□ -1.96
PML39	YML107C	LAG2	Q92325	660 aa		2.78	□□□□□ -1.96
PML39	YML107C	SNF2	P22082	1703 aa		2.78	□□□□□ -1.96
PML39	YML107C	TDH3	P00359	332 aa	Known RBP RIP-Chip data	2.77	□□□□□ -1.97	not detected
PML39	YML107C	MRPL6	P32904	214 aa		2.77	□□□□□ -1.97
PML39	YML107C	ASP1	P38986	381 aa	Predicted RBP	2.77	□□□□□ -1.97
PML39	YML107C	PCL7	P40186	285 aa		2.77	□□□□□ -1.97
PML39	YML107C	COS4	P43542	379 aa		2.77	□□□□□ -1.97
PML39	YML107C	CPR7	P47103	393 aa		2.77	□□□□□ -1.97
PML39	YML107C	SWC4	P53201	476 aa		2.77	□□□□□ -1.97
PML39	YML107C	ERV25	P54837	211 aa	Known RBP	2.77	□□□□□ -1.97
PML39	YML107C	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	2.77	□□□□□ -1.97	not detected
PML39	YML107C	YMR111C	Q04461	462 aa	Predicted RBP	2.77	□□□□□ -1.97
PML39	YML107C	RNH1	Q04740	348 aa		2.77	□□□□□ -1.97
PML39	YML107C	ARC18	Q05933	178 aa	Known RBP	2.77	□□□□□ -1.97
PML39	YML107C	DIB1	Q06819	143 aa	Predicted RBP	2.77	□□□□□ -1.97
PML39	YML107C	YOR292C	Q08743	309 aa		2.77	□□□□□ -1.97
PML39	YML107C	SGT2	Q12118	346 aa	Known RBP	2.77	□□□□□ -1.97
PML39	YML107C	RRP42	Q12277	265 aa	Predicted RBP	2.77	□□□□□ -1.97
PML39	YML107C	VTH1	P40438	1549 aa		2.77	□□□□□ -1.97
PML39	YML107C	VTH2	P40890	1549 aa		2.77	□□□□□ -1.97
PML39	YML107C	TSC11	P40061	1430 aa		2.76	□□□□□ -1.97
PML39	YML107C	IFM1	P25038	676 aa		2.76	□□□□□ -1.97
PML39	YML107C	AGA2	P32781	87 aa		2.76	□□□□□ -1.97
PML39	YML107C	CSE1	P33307	960 aa		2.76	□□□□□ -1.97
PML39	YML107C	MNN9	P39107	395 aa	Known RBP	2.76	□□□□□ -1.97
PML39	YML107C	EDC2	P40023	145 aa	Predicted RBP	2.76	□□□□□ -1.97
PML39	YML107C	RTT105	P40063	208 aa		2.76	□□□□□ -1.97
PML39	YML107C	LOH1	P47055	219 aa		2.76	□□□□□ -1.97
PML39	YML107C	DBP6	P53734	629 aa	Known RBP	2.76	□□□□□ -1.97
PML39	YML107C	SEC13	Q04491	297 aa	Known RBP	2.76	□□□□□ -1.97
PML39	YML107C	ERP3	Q12403	225 aa		2.76	□□□□□ -1.97
PML39	YML107C	DCP1	Q12517	231 aa	Predicted RBP	2.76	□□□□□ -1.97
PML39	YML107C	PDR12	Q02785	1511 aa		2.76	□□□□□ -1.97
PML39	YML107C	PRP8	P33334	2413 aa	Known RBP	2.76	□□□□□ -1.97
PML39	YML107C	MSS116	P15424	664 aa	Known RBP	2.75	□□□□□ -1.97
PML39	YML107C	RPL5	P26321	297 aa	Known RBP	2.75	□□□□□ -1.97
PML39	YML107C	DAL80	P26343	269 aa		2.75	□□□□□ -1.97
PML39	YML107C	IME2	P32581	645 aa		2.75	□□□□□ -1.97
PML39	YML107C	MCH2	P36032	473 aa		2.75	□□□□□ -1.97
PML39	YML107C	SWD2	P36104	329 aa	Predicted RBP	2.75	□□□□□ -1.97
PML39	YML107C	COX16	P47081	118 aa		2.75	□□□□□ -1.97
PML39	YML107C	RFM1	Q12192	310 aa		2.75	□□□□□ -1.97
PML39	YML107C	SIA1	Q12212	622 aa		2.75	□□□□□ -1.97
PML39	YML107C	PRP46	Q12417	451 aa	Predicted RBP	2.75	□□□□□ -1.97
PML39	YML107C	RPC40	P07703	335 aa	Known RBP	2.74	□□□□□ -1.97
PML39	YML107C	RAD51	P25454	400 aa		2.74	□□□□□ -1.97
PML39	YML107C	CDC13	P32797	924 aa	Known RBP	2.74	□□□□□ -1.97
PML39	YML107C	AIM29	P36154	155 aa		2.74	□□□□□ -1.97
PML39	YML107C	CUR1	Q06469	252 aa		2.74	□□□□□ -1.97
PML39	YML107C	VAC14	Q06708	880 aa		2.74	□□□□□ -1.97
PML39	YML107C	YPL278C	Q08990	100 aa		2.74	□□□□□ -1.97
PML39	YML107C	APC9	Q12107	265 aa		2.74	□□□□□ -1.97
PML39	YML107C	PFK27	Q12471	397 aa	Predicted RBP	2.74	□□□□□ -1.97
PML39	YML107C	SRB8	P25648	1427 aa		2.74	□□□□□ -1.97
PML39	YML107C	NUP157	P40064	1391 aa	Known RBP	2.74	□□□□□ -1.97
PML39	YML107C	OM45	P16547	393 aa		2.73	□□□□□ -1.97
PML39	YML107C	HPR1	P17629	752 aa	Known RBP	2.73	□□□□□ -1.97
PML39	YML107C	DBP3	P20447	523 aa	Known RBP	2.73	□□□□□ -1.97
PML39	YML107C	YPC1	P38298	316 aa		2.73	□□□□□ -1.97
PML39	YML107C	TDA11	P38854	504 aa		2.73	□□□□□ -1.97
PML39	YML107C	RAD17	P48581	401 aa		2.73	□□□□□ -1.97
PML39	YML107C	CSI1	Q04368	295 aa		2.73	□□□□□ -1.97
PML39	YML107C	RRG8	Q06109	277 aa		2.73	□□□□□ -1.97

Retrieved 100 of 5,963 RNA–protein pairs in 42.1 ms