RNA–Protein interactions for RNA: YHR088W

RPF1, Transcript of Protein involved in assembly and export of the large ribosomal subunit, yeastyeast

Gene RPF1, Length 888 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPF1YHR088W YHC3P47040 408 aa1.52□□□□□ -2.17
RPF1YHR088W YNR068CP53754 272 aa1.52□□□□□ -2.17
RPF1YHR088W DTD1Q07648 150 aaKnown RBP1.52□□□□□ -2.17
RPF1YHR088W SFG1Q12507 346 aa1.52□□□□□ -2.17
RPF1YHR088W RAD1P06777 1100 aa1.51□□□□□ -2.17
RPF1YHR088W UBA1P22515 1024 aaKnown RBP1.51□□□□□ -2.17
RPF1YHR088W RDS1P25611 832 aa1.51□□□□□ -2.17
RPF1YHR088W VPH2P32341 215 aa1.51□□□□□ -2.17
RPF1YHR088W CLB6P32943 380 aa1.51□□□□□ -2.17
RPF1YHR088W MED6P38782 295 aa1.51□□□□□ -2.17
RPF1YHR088W YMR310CQ04867 317 aaPredicted RBP1.51□□□□□ -2.17
RPF1YHR088W ERP3Q12403 225 aa1.51□□□□□ -2.17
RPF1YHR088W REP1P03871 373 aa1.5□□□□□ -2.17
RPF1YHR088W YOL163WP0CF20 169 aa1.5□□□□□ -2.17
RPF1YHR088W MNE1P24720 663 aa1.5□□□□□ -2.17
RPF1YHR088W KTI12P34253 313 aaKnown RBP1.5□□□□□ -2.17
RPF1YHR088W CAB3P36076 571 aa1.5□□□□□ -2.17
RPF1YHR088W MMS21P38632 267 aa1.5□□□□□ -2.17
RPF1YHR088W YER084WP40057 128 aa1.5□□□□□ -2.17
RPF1YHR088W SEC28P40509 296 aaKnown RBP1.5□□□□□ -2.17
RPF1YHR088W SYF2P53277 215 aaPredicted RBP1.5□□□□□ -2.17
RPF1YHR088W UTP6Q02354 440 aaKnown RBP1.5□□□□□ -2.17
RPF1YHR088W MRX9Q07349 420 aaKnown RBP1.5□□□□□ -2.17
RPF1YHR088W MIM1Q08176 113 aa1.5□□□□□ -2.17
RPF1YHR088W YPL245WQ12179 454 aaKnown RBP1.5□□□□□ -2.17
RPF1YHR088W HSP82P02829 709 aaKnown RBP1.49□□□□□ -2.17
RPF1YHR088W YSW1P38280 609 aa1.49□□□□□ -2.17
RPF1YHR088W YHL044WP38727 235 aa1.49□□□□□ -2.17
RPF1YHR088W UFD1P53044 361 aa1.49□□□□□ -2.17
RPF1YHR088W HCH1P53834 153 aa1.49□□□□□ -2.17
RPF1YHR088W EDC2P40023 145 aaPredicted RBP1.48□□□□□ -2.17
RPF1YHR088W RPA34P47006 233 aaPredicted RBP1.48□□□□□ -2.17
RPF1YHR088W AQR1P53943 586 aa1.48□□□□□ -2.17
RPF1YHR088W CGI121Q03705 181 aaKnown RBP1.48□□□□□ -2.17
RPF1YHR088W RDL2Q08742 149 aaKnown RBP1.48□□□□□ -2.17
RPF1YHR088W GLE1Q12315 538 aa1.48□□□□□ -2.17
RPF1YHR088W SKS1Q12505 502 aa1.48□□□□□ -2.17
RPF1YHR088W CBP2P03874 630 aaPredicted RBP1.47□□□□□ -2.17
RPF1YHR088W MRPL20P22354 195 aaPredicted RBP1.47□□□□□ -2.17
RPF1YHR088W RBK1P25332 333 aa1.47□□□□□ -2.17
RPF1YHR088W FYV8P46949 817 aaKnown RBP1.47□□□□□ -2.17
RPF1YHR088W TY3A-GQ12173 290 aa1.47□□□□□ -2.17
RPF1YHR088W RGS2Q99188 309 aa1.47□□□□□ -2.17
RPF1YHR088W TY3A-IQ99219 290 aa1.47□□□□□ -2.17
RPF1YHR088W CDC42P19073 191 aa1.46□□□□□ -2.18
RPF1YHR088W MPE1P35728 441 aaKnown RBP1.46□□□□□ -2.18
RPF1YHR088W DAD2P36162 133 aa1.46□□□□□ -2.18
RPF1YHR088W IML3P38265 245 aa1.46□□□□□ -2.18
RPF1YHR088W YIL089WP40500 205 aa1.46□□□□□ -2.18
RPF1YHR088W YLR012CQ07927 99 aa1.46□□□□□ -2.18
RPF1YHR088W VIK1Q12045 647 aa1.46□□□□□ -2.18
RPF1YHR088W TIM22Q12328 207 aa1.46□□□□□ -2.18
RPF1YHR088W NBL1Q3E7Y6 73 aa1.46□□□□□ -2.18
RPF1YHR088W YAK1P14680 807 aa1.45□□□□□ -2.18
RPF1YHR088W PHO80P20052 293 aa1.45□□□□□ -2.18
RPF1YHR088W PRE7P23724 241 aaKnown RBP1.45□□□□□ -2.18
RPF1YHR088W CIN8P27895 1000 aa1.45□□□□□ -2.18
RPF1YHR088W YEL043WP32618 956 aa1.45□□□□□ -2.18
RPF1YHR088W AIM29P36154 155 aa1.45□□□□□ -2.18
RPF1YHR088W PES4P39684 611 aa1.45□□□□□ -2.18
RPF1YHR088W YNR066CP53752 436 aa1.45□□□□□ -2.18
RPF1YHR088W UBX2Q04228 584 aa1.45□□□□□ -2.18
RPF1YHR088W YOR012WQ12351 137 aa1.45□□□□□ -2.18
RPF1YHR088W ZWF1P11412 505 aaKnown RBP1.44□□□□□ -2.18
RPF1YHR088W VPS1P21576 704 aaKnown RBP1.44□□□□□ -2.18
RPF1YHR088W MEI5P32489 222 aa1.44□□□□□ -2.18
RPF1YHR088W SUR1P33300 382 aa1.44□□□□□ -2.18
RPF1YHR088W MYO3P36006 1272 aa1.44□□□□□ -2.18
RPF1YHR088W BTT1P40314 149 aaPredicted RBP1.44□□□□□ -2.18
RPF1YHR088W JEM1P40358 645 aa1.44□□□□□ -2.18
RPF1YHR088W LIF1P53150 421 aa1.44□□□□□ -2.18
RPF1YHR088W RSC1P53236 928 aa1.44□□□□□ -2.18
RPF1YHR088W PFK27Q12471 397 aaPredicted RBP1.44□□□□□ -2.18
RPF1YHR088W HXT2P23585 541 aa1.43□□□□□ -2.18
RPF1YHR088W ACB1P31787 87 aa1.43□□□□□ -2.18
RPF1YHR088W POP2P39008 433 aa1.43□□□□□ -2.18
RPF1YHR088W TAF6P53040 516 aa1.43□□□□□ -2.18
RPF1YHR088W PXR1P53335 271 aaPredicted RBP1.43□□□□□ -2.18
RPF1YHR088W EOS1P53938 366 aa1.43□□□□□ -2.18
RPF1YHR088W SEC13Q04491 297 aaKnown RBP1.43□□□□□ -2.18
RPF1YHR088W YLL053CP0CD98 152 aa1.42□□□□□ -2.18
RPF1YHR088W SPS100P13130 326 aa1.42□□□□□ -2.18
RPF1YHR088W RRT12P25381 491 aa1.42□□□□□ -2.18
RPF1YHR088W NRG2P38082 220 aa1.42□□□□□ -2.18
RPF1YHR088W ADH5P38113 351 aaKnown RBP1.42□□□□□ -2.18
RPF1YHR088W PET8P38921 284 aa1.42□□□□□ -2.18
RPF1YHR088W RSM27P53305 110 aa1.42□□□□□ -2.18
RPF1YHR088W YNL143CP53908 130 aa1.42□□□□□ -2.18
RPF1YHR088W OSH6Q02201 448 aa1.42□□□□□ -2.18
RPF1YHR088W GCG1P32656 232 aaKnown RBP1.41□□□□□ -2.18
RPF1YHR088W YER188WP40103 239 aa1.41□□□□□ -2.18
RPF1YHR088W RVB1Q03940 463 aaKnown RBP1.41□□□□□ -2.18
RPF1YHR088W YOR292CQ08743 309 aa1.41□□□□□ -2.18
RPF1YHR088W ALP1P38971 573 aa1.4□□□□□ -2.19
RPF1YHR088W SOP4P39543 234 aaPredicted RBP1.4□□□□□ -2.19
RPF1YHR088W PRP39P39682 629 aaKnown RBP1.4□□□□□ -2.19
RPF1YHR088W YFL064CP43540 174 aa1.4□□□□□ -2.19
RPF1YHR088W YFL040WP43562 540 aa1.4□□□□□ -2.19
RPF1YHR088W DSK2P48510 373 aa1.4□□□□□ -2.19
RPF1YHR088W YGR016WP53209 190 aa1.4□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 142.1 ms