RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W SPC19Q03954 165 aa3.06□□□□□ -1.92
USE1YGL098W ATC1Q04005 294 aa3.06□□□□□ -1.92
USE1YGL098W VBA1Q04301 562 aa3.06□□□□□ -1.92
USE1YGL098W YPR127WQ06494 345 aa3.06□□□□□ -1.92
USE1YGL098W MRL1Q06815 381 aa3.06□□□□□ -1.92
USE1YGL098W MFG1Q07684 458 aa3.06□□□□□ -1.92
USE1YGL098W SDO1Q07953 250 aaKnown RBP3.06□□□□□ -1.92
USE1YGL098W REX4Q08237 289 aa3.06□□□□□ -1.92
USE1YGL098W YOR365CQ08844 703 aa3.06□□□□□ -1.92
USE1YGL098W RAD28Q12021 506 aa3.06□□□□□ -1.92
USE1YGL098W POM33Q12164 279 aa3.06□□□□□ -1.92
USE1YGL098W INP53Q12271 1107 aa3.06□□□□□ -1.92
USE1YGL098W WTM1Q12363 437 aaKnown RBP3.06□□□□□ -1.92
USE1YGL098W NDJ1Q12366 352 aa3.06□□□□□ -1.92
USE1YGL098W TFC7Q12415 435 aa3.06□□□□□ -1.92
USE1YGL098W EAF3Q12432 401 aa3.06□□□□□ -1.92
USE1YGL098W CTF3Q12748 733 aa3.06□□□□□ -1.92
USE1YGL098W Q0142Q9ZZW4 58 aa3.06□□□□□ -1.92
USE1YGL098W CAN1P04817 590 aa3.05□□□□□ -1.92
USE1YGL098W RPL9AP05738 191 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W CTT1P06115 562 aa3.05□□□□□ -1.92
USE1YGL098W HAP2P06774 265 aa3.05□□□□□ -1.92
USE1YGL098W SGA1P08019 549 aa3.05□□□□□ -1.92
USE1YGL098W SEC12P11655 471 aa3.05□□□□□ -1.92
USE1YGL098W YPK1P12688 680 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W TFS1P14306 219 aa3.05□□□□□ -1.92
USE1YGL098W MET8P15807 274 aa3.05□□□□□ -1.92
USE1YGL098W ERD2P18414 219 aa3.05□□□□□ -1.92
USE1YGL098W AAT2P23542 418 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W PRE7P23724 241 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W RSA4P25382 515 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W PER1P25625 357 aa3.05□□□□□ -1.92
USE1YGL098W COQ3P27680 312 aa3.05□□□□□ -1.92
USE1YGL098W LAC1P28496 418 aa3.05□□□□□ -1.92
USE1YGL098W MSK1P32048 576 aa3.05□□□□□ -1.92
USE1YGL098W MRP20P32387 263 aa3.05□□□□□ -1.92
USE1YGL098W ERG1P32476 496 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W MGM101P32787 269 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W EMP24P32803 203 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W CLB6P32943 380 aa3.05□□□□□ -1.92
USE1YGL098W SFC1P33303 322 aa3.05□□□□□ -1.92
USE1YGL098W SOF1P33750 489 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W DOA1P36037 715 aa3.05□□□□□ -1.92
USE1YGL098W YKL151CP36059 337 aa3.05□□□□□ -1.92
USE1YGL098W SHE2P36068 246 aaKnown RBP RIP-Chip data3.05□□□□□ -1.92not detected
USE1YGL098W ALY1P36117 915 aa3.05□□□□□ -1.92
USE1YGL098W GPT2P36148 743 aa3.05□□□□□ -1.92
USE1YGL098W FLO10P36170 1169 aa3.05□□□□□ -1.92
USE1YGL098W SDH4P37298 181 aa3.05□□□□□ -1.92
USE1YGL098W DTR1P38125 572 aa3.05□□□□□ -1.92
USE1YGL098W FIG1P38224 298 aa3.05□□□□□ -1.92
USE1YGL098W SHE3P38272 425 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W EHT1P38295 451 aa3.05□□□□□ -1.92
USE1YGL098W SAF1P38352 637 aa3.05□□□□□ -1.92
USE1YGL098W YHR035WP38769 630 aa3.05□□□□□ -1.92
USE1YGL098W CHS7P38843 316 aa3.05□□□□□ -1.92
USE1YGL098W DHH1P39517 506 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W VPS52P39904 641 aa3.05□□□□□ -1.92
USE1YGL098W RRG9P40156 214 aa3.05□□□□□ -1.92
USE1YGL098W PCL7P40186 285 aa3.05□□□□□ -1.92
USE1YGL098W COA1P40452 197 aa3.05□□□□□ -1.92
USE1YGL098W YFL052WP43551 465 aa3.05□□□□□ -1.92
USE1YGL098W IRC7P43623 340 aa3.05□□□□□ -1.92
USE1YGL098W DPB11P47027 764 aaPredicted RBP3.05□□□□□ -1.92
USE1YGL098W ZAP1P47043 880 aa3.05□□□□□ -1.92
USE1YGL098W YJR149WP47177 404 aa3.05□□□□□ -1.92
USE1YGL098W DAN1P47178 298 aa3.05□□□□□ -1.92
USE1YGL098W TRM9P49957 279 aa3.05□□□□□ -1.92
USE1YGL098W RPL9BP51401 191 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W SDT1P53078 280 aa3.05□□□□□ -1.92
USE1YGL098W YGL185CP53100 379 aa3.05□□□□□ -1.92
USE1YGL098W RRT6P53117 311 aaPredicted RBP3.05□□□□□ -1.92
USE1YGL098W TIM13P53299 105 aa3.05□□□□□ -1.92
USE1YGL098W FMP41P53889 259 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W YNL134CP53912 376 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W GPI15P53961 229 aa3.05□□□□□ -1.92
USE1YGL098W SAM50P53969 484 aa3.05□□□□□ -1.92
USE1YGL098W RHO3Q00245 231 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W YSA1Q01976 231 aa3.05□□□□□ -1.92
USE1YGL098W GIP3Q03016 1276 aa3.05□□□□□ -1.92
USE1YGL098W CTK1Q03957 528 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W YMR087WQ04299 284 aa3.05□□□□□ -1.92
USE1YGL098W FIT1Q04433 528 aa3.05□□□□□ -1.92
USE1YGL098W VBA4Q04602 768 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W SEN15Q04675 128 aa3.05□□□□□ -1.92
USE1YGL098W YLR446WQ06204 433 aa3.05□□□□□ -1.92
USE1YGL098W SKG3Q06315 1026 aa3.05□□□□□ -1.92
USE1YGL098W MRI1Q06489 411 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W MRX9Q07349 420 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W HBT1Q07653 1046 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W AIM39Q08223 395 aa3.05□□□□□ -1.92
USE1YGL098W LEA1Q08963 238 aaPredicted RBP3.05□□□□□ -1.92
USE1YGL098W RTK1Q12100 620 aaPredicted RBP3.05□□□□□ -1.92
USE1YGL098W SIA1Q12212 622 aa3.05□□□□□ -1.92
USE1YGL098W MDY2Q12285 212 aa3.05□□□□□ -1.92
USE1YGL098W MRX4Q12467 430 aa3.05□□□□□ -1.92
USE1YGL098W TMA17Q12513 150 aa3.05□□□□□ -1.92
USE1YGL098W YPR145C-AQ2V2P0 78 aa3.05□□□□□ -1.92
USE1YGL098W HRP1Q99383 534 aaKnown RBP3.05□□□□□ -1.92
USE1YGL098W FKS3Q04952 1785 aa3.05□□□□□ -1.92
Retrieved 100 of 5,963 RNA–protein pairs in 43.9 ms