RNA–Protein interactions for RNA: YDR078C

SHU2, Transcript of Component of Shu complex (aka PCSS complex), yeastyeast

Gene SHU2, Length 672 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHU2YDR078C SDT1P53078 280 aa3.31□□□□□ -1.88
SHU2YDR078C VHT1P53241 593 aa3.31□□□□□ -1.88
SHU2YDR078C YPL077CQ02831 240 aa3.31□□□□□ -1.88
SHU2YDR078C YOR376WQ08900 122 aa3.31□□□□□ -1.88
SHU2YDR078C UTP23Q12339 254 aaKnown RBP3.31□□□□□ -1.88
SHU2YDR078C ERP3Q12403 225 aa3.31□□□□□ -1.88
SHU2YDR078C TDH1P00360 332 aaKnown RBP3.3□□□□□ -1.88
SHU2YDR078C ERD1P16151 362 aa3.3□□□□□ -1.88
SHU2YDR078C RPL16BP26785 198 aaKnown RBP3.3□□□□□ -1.88
SHU2YDR078C RPT5P33297 434 aaKnown RBP3.3□□□□□ -1.88
SHU2YDR078C YBR241CP38142 488 aa3.3□□□□□ -1.88
SHU2YDR078C RCK1P38622 512 aa3.3□□□□□ -1.88
SHU2YDR078C SOP4P39543 234 aaPredicted RBP3.3□□□□□ -1.88
SHU2YDR078C GDS1P41913 522 aa3.3□□□□□ -1.88
SHU2YDR078C IGD1P43598 195 aa3.3□□□□□ -1.88
SHU2YDR078C MRX5P47007 382 aa3.3□□□□□ -1.88
SHU2YDR078C TPC1P53257 314 aa3.3□□□□□ -1.88
SHU2YDR078C RNH201P53942 307 aa3.3□□□□□ -1.88
SHU2YDR078C ATC1Q04005 294 aa3.3□□□□□ -1.88
SHU2YDR078C GPN3Q06543 272 aa3.3□□□□□ -1.88
SHU2YDR078C MHP1P43638 1398 aa3.29□□□□□ -1.88
SHU2YDR078C NOP1P15646 327 aaKnown RBP3.29□□□□□ -1.88
SHU2YDR078C YSR3P23501 404 aa3.29□□□□□ -1.88
SHU2YDR078C COT1P32798 439 aa3.29□□□□□ -1.88
SHU2YDR078C CBF5P33322 483 aaKnown RBP RIP-Chip data3.29□□□□□ -1.88not detected
SHU2YDR078C RPC37P36121 282 aa3.29□□□□□ -1.88
SHU2YDR078C SHE3P38272 425 aaKnown RBP3.29□□□□□ -1.88
SHU2YDR078C ALD5P40047 520 aaKnown RBP3.29□□□□□ -1.88
SHU2YDR078C SHQ1P40486 507 aaPredicted RBP3.29□□□□□ -1.88
SHU2YDR078C UBC13P52490 153 aa3.29□□□□□ -1.88
SHU2YDR078C YDR115WQ04598 105 aa3.29□□□□□ -1.88
SHU2YDR078C SCW10Q04951 389 aa3.29□□□□□ -1.88
SHU2YDR078C PAL1Q05518 499 aaKnown RBP3.29□□□□□ -1.88
SHU2YDR078C ASR1Q06834 288 aa3.29□□□□□ -1.88
SHU2YDR078C RPL21BQ12672 160 aaKnown RBP3.29□□□□□ -1.88
SHU2YDR078C SSK22P25390 1331 aaPredicted RBP3.28□□□□□ -1.88
SHU2YDR078C INO2P26798 304 aa3.28□□□□□ -1.88
SHU2YDR078C YKL063CP35725 167 aa3.28□□□□□ -1.88
SHU2YDR078C YPC1P38298 316 aa3.28□□□□□ -1.88
SHU2YDR078C TDA11P38854 504 aa3.28□□□□□ -1.88
SHU2YDR078C STB1P42845 420 aa3.28□□□□□ -1.88
SHU2YDR078C KAP114P53067 1004 aa3.28□□□□□ -1.88
SHU2YDR078C YGL039WP53183 348 aaKnown RBP3.28□□□□□ -1.88
SHU2YDR078C LSB1P53281 241 aa3.28□□□□□ -1.88
SHU2YDR078C RMI1Q02685 241 aa3.28□□□□□ -1.88
SHU2YDR078C GMC2Q06201 188 aa3.28□□□□□ -1.88
SHU2YDR078C MHR1Q06630 226 aa3.28□□□□□ -1.88
SHU2YDR078C TDH3P00359 332 aaKnown RBP RIP-Chip data3.27□□□□□ -1.89not detected
SHU2YDR078C ILV1P00927 576 aaKnown RBP3.27□□□□□ -1.89
SHU2YDR078C COX4P04037 155 aa3.27□□□□□ -1.89
SHU2YDR078C BGL2P15703 313 aaKnown RBP3.27□□□□□ -1.89
SHU2YDR078C IES6P32617 166 aa3.27□□□□□ -1.89
SHU2YDR078C SKG6P32900 734 aaPredicted RBP3.27□□□□□ -1.89
SHU2YDR078C COY1P34237 679 aa3.27□□□□□ -1.89
SHU2YDR078C GPI18P38211 433 aa3.27□□□□□ -1.89
SHU2YDR078C EFM1P38732 585 aa3.27□□□□□ -1.89
SHU2YDR078C PET8P38921 284 aa3.27□□□□□ -1.89
SHU2YDR078C PRE5P40302 234 aaKnown RBP3.27□□□□□ -1.89
SHU2YDR078C NRM1P53718 249 aa3.27□□□□□ -1.89
SHU2YDR078C YLR446WQ06204 433 aa3.27□□□□□ -1.89
SHU2YDR078C TMC1Q08422 150 aaPredicted RBP3.27□□□□□ -1.89
SHU2YDR078C MMT2Q08970 484 aa3.27□□□□□ -1.89
SHU2YDR078C SRO7Q12038 1033 aa3.27□□□□□ -1.89
SHU2YDR078C POM33Q12164 279 aa3.27□□□□□ -1.89
SHU2YDR078C RRP42Q12277 265 aaPredicted RBP3.27□□□□□ -1.89
SHU2YDR078C COX2P00410 251 aa3.26□□□□□ -1.89
SHU2YDR078C RSR1P13856 272 aa3.26□□□□□ -1.89
SHU2YDR078C MRPL20P22354 195 aaPredicted RBP3.26□□□□□ -1.89
SHU2YDR078C SPT8P38915 602 aa3.26□□□□□ -1.89
SHU2YDR078C YIA6P40556 373 aa3.26□□□□□ -1.89
SHU2YDR078C PGU1P47180 361 aa3.26□□□□□ -1.89
SHU2YDR078C YLR152CP54072 576 aa3.26□□□□□ -1.89
SHU2YDR078C MRX11Q03079 207 aa3.26□□□□□ -1.89
SHU2YDR078C ADD37Q03233 198 aa3.26□□□□□ -1.89
SHU2YDR078C COX20Q04935 205 aa3.26□□□□□ -1.89
SHU2YDR078C MIM1Q08176 113 aa3.26□□□□□ -1.89
SHU2YDR078C YPL245WQ12179 454 aaKnown RBP3.26□□□□□ -1.89
SHU2YDR078C YPR064WQ12492 139 aa3.26□□□□□ -1.89
SHU2YDR078C BI3Q9ZZW7 517 aa3.26□□□□□ -1.89
SHU2YDR078C YKL187CP34231 750 aa3.25□□□□□ -1.89
SHU2YDR078C TIS11P47977 285 aa3.25□□□□□ -1.89
SHU2YDR078C NUP84P52891 726 aa3.25□□□□□ -1.89
SHU2YDR078C SHE10P53075 577 aa3.25□□□□□ -1.89
SHU2YDR078C SDS23P53172 527 aa3.25□□□□□ -1.89
SHU2YDR078C TPS1Q00764 495 aaKnown RBP3.25□□□□□ -1.89
SHU2YDR078C YLR173WQ06247 608 aa3.25□□□□□ -1.89
SHU2YDR078C TAZ1Q06510 381 aa3.25□□□□□ -1.89
SHU2YDR078C YOL107WQ12239 342 aa3.25□□□□□ -1.89
SHU2YDR078C TFS1P14306 219 aa3.24□□□□□ -1.89
SHU2YDR078C POL30P15873 258 aaKnown RBP3.24□□□□□ -1.89
SHU2YDR078C IFM1P25038 676 aa3.24□□□□□ -1.89
SHU2YDR078C IMP3P32899 183 aaPredicted RBP3.24□□□□□ -1.89
SHU2YDR078C MRPL27P36526 146 aaPredicted RBP3.24□□□□□ -1.89
SHU2YDR078C GGC1P38988 300 aa3.24□□□□□ -1.89
SHU2YDR078C PRM9P39551 298 aa3.24□□□□□ -1.89
SHU2YDR078C YAR1P46683 200 aa3.24□□□□□ -1.89
SHU2YDR078C YJL118WP47022 219 aa3.24□□□□□ -1.89
SHU2YDR078C YPT32P51996 222 aaKnown RBP3.24□□□□□ -1.89
SHU2YDR078C YPS5P53057 165 aa3.24□□□□□ -1.89
SHU2YDR078C YNR066CP53752 436 aa3.24□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 138 ms