RNA–Protein interactions for RNA: YDR243C

PRP28, Transcript of RNA helicase in the DEAD-box family, yeast

Gene PRP28, Length 1,767 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP28	YDR243C	MRPL36	P36531	177 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	RIM2	P38127	377 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	RIB5	P38145	238 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	YBR284W	P38150	797 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	ATG8	P38182	117 aa	RIP-Chip data	4.19	□□□□□ -1.74	not detected
PRP28	YDR243C	CRP1	P38845	465 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	PFS1	P38872	237 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	GAT2	P40209	560 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	NIT2	P47016	307 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	NQM1	P53228	333 aa	Predicted RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	COQ6	P53318	479 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	MPA43	P53583	542 aa	Predicted RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	YDR366C	P87287	132 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	MAK3	Q03503	176 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	EKI1	Q03764	534 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	LRS4	Q04087	347 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	YPL245W	Q12179	454 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	YDR262W	Q12331	272 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	TY1A-NL1	Q12391	440 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	YPR145C-A	Q2V2P0	78 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	GLT1	Q12680	2145 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	APC1	P53886	1748 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	CYC1	P00044	109 aa	Predicted RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	SNF6	P18888	332 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	VBA3	P25594	458 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	MGT1	P26188	188 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	PRE4	P30657	266 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	WBP1	P33767	430 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	YKR051W	P36142	418 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	FAT1	P38225	669 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	EHT1	P38295	451 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	YPC1	P38298	316 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	PCM1	P38628	557 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	ARN1	P38731	627 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	PPE1	P38796	400 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	RPF1	P38805	295 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	FAD1	P38913	306 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	SEC72	P39742	193 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	VPS52	P39904	641 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	HAT2	P39984	401 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	MCM22	P47167	239 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	CTR1	P49573	406 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	FLC3	P53121	802 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	YGL101W	P53144	215 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	PEX31	P53203	462 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	YNL095C	P53932	642 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	PRP38	Q00723	242 aa	Predicted RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	NUP116	Q02630	1113 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	YMR209C	Q03648	457 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	CTK1	Q03957	528 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	CUE4	Q04201	117 aa	Predicted RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	SEC13	Q04491	297 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	YMR253C	Q04835	414 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	DUS4	Q06063	367 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	BER1	Q06688	274 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	MRX9	Q07349	420 aa	Known RBP	4.19	□□□□□ -1.74
PRP28	YDR243C	YET3	Q07451	203 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	TFC7	Q12415	435 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	MHT1	Q12525	324 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	YPL119C-A	Q3E751	87 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	VMA9	Q3E7B6	73 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	HBN1	Q96VH4	193 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	TY4B-H	P0C2J7	1802 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	TY4B-J	P47024	1803 aa		4.19	□□□□□ -1.74
PRP28	YDR243C	CAR1	P00812	333 aa	Known RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	SPS2	P08459	502 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	ERR1	P0CX10	437 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	ERR2	P0CX11	437 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	SCH9	P11792	824 aa	Known RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	REV1	P12689	985 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	NUP1	P20676	1076 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	NPR1	P22211	790 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	EXG1	P23776	448 aa	Known RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	PET18	P25362	215 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	IMG2	P25642	146 aa	Predicted RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	PPZ1	P26570	692 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	PHO91	P27514	894 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.18	□□□□□ -1.74	not detected
PRP28	YDR243C	MDL1	P33310	695 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	DTR1	P38125	572 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	VAC8	P39968	578 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	AVT2	P39981	480 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	COG3	P40094	801 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	ERR3	P42222	437 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	YJR149W	P47177	404 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	DAN1	P47178	298 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	ASN1	P49089	572 aa	Known RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	ASN2	P49090	572 aa	Known RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	YGR151C	P53287	111 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	YNL184C	P53876	108 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	LSM7	P53905	115 aa	Known RBP	4.18	□□□□□ -1.74
PRP28	YDR243C	YNL033W	P53964	284 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	YNL019C	P53975	284 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	SNO1	Q03144	224 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	ATC1	Q04005	294 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	YDR391C	Q04170	232 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	HSP31	Q04432	237 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	CSM3	Q04659	317 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	CTS2	Q06350	511 aa		4.18	□□□□□ -1.74
PRP28	YDR243C	RAD28	Q12021	506 aa		4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 47.9 ms