RNA–Protein interactions for RNA: YMR012W

CLU1, Transcript of Subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene CLU1, Length 3,834 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLU1	YMR012W	YJL171C	P46992	396 aa		2.13	□□□□□ -2.07
CLU1	YMR012W	YBL113C	Q7M4S9	792 aa		2.13	□□□□□ -2.07
CLU1	YMR012W	AIM44	Q99299	758 aa		2.13	□□□□□ -2.07
CLU1	YMR012W	ENO1	P00924	437 aa	Known RBP	2.13	□□□□□ -2.07
CLU1	YMR012W	NUP42	P49686	430 aa	Known RBP	2.13	□□□□□ -2.07
CLU1	YMR012W	EAR1	Q03212	550 aa		2.13	□□□□□ -2.07
CLU1	YMR012W	VTH1	P40438	1549 aa		2.12	□□□□□ -2.07
CLU1	YMR012W	VTH2	P40890	1549 aa		2.12	□□□□□ -2.07
CLU1	YMR012W	SSA4	P22202	642 aa	Known RBP	2.12	□□□□□ -2.07
CLU1	YMR012W	BRN1	P38170	754 aa		2.12	□□□□□ -2.07
CLU1	YMR012W	CWC24	P53769	259 aa		2.12	□□□□□ -2.07
CLU1	YMR012W	SPR28	Q04921	423 aa		2.12	□□□□□ -2.07
CLU1	YMR012W	SNF2	P22082	1703 aa		2.12	□□□□□ -2.07
CLU1	YMR012W	VNX1	P42839	908 aa		2.12	□□□□□ -2.07
CLU1	YMR012W	RTS3	P53289	263 aa		2.12	□□□□□ -2.07
CLU1	YMR012W	NUP157	P40064	1391 aa	Known RBP	2.11	□□□□□ -2.07
CLU1	YMR012W	KIC1	P38692	1080 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	ALD6	P54115	500 aa	Known RBP	2.11	□□□□□ -2.07
CLU1	YMR012W	SNQ2	P32568	1501 aa	Known RBP	2.11	□□□□□ -2.07
CLU1	YMR012W	TY1B-DR3	Q99231	1755 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	RTG3	P38165	486 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	RNH70	P53331	553 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	SPP1	Q03012	353 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	YBL029C-A	Q3E756	94 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	SRB8	P25648	1427 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	CAT8	P39113	1433 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	TSC11	P40061	1430 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	ATE1	P16639	503 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	YKL091C	P33324	310 aa	Known RBP	2.11	□□□□□ -2.07
CLU1	YMR012W	DCW1	P36091	449 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	MET1	P36150	593 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	YAP5	P40574	245 aa		2.11	□□□□□ -2.07
CLU1	YMR012W	NAP1	P25293	417 aa	Known RBP	2.1	□□□□□ -2.07
CLU1	YMR012W	SRP40	P32583	406 aa	Predicted RBP	2.1	□□□□□ -2.07
CLU1	YMR012W	REF2	P42073	533 aa	Predicted RBP	2.1	□□□□□ -2.07
CLU1	YMR012W	POL32	P47110	350 aa		2.1	□□□□□ -2.07
CLU1	YMR012W	CFT1	Q06632	1357 aa	Known RBP	2.1	□□□□□ -2.07
CLU1	YMR012W	RPA135	P22138	1203 aa	Known RBP	2.1	□□□□□ -2.07
CLU1	YMR012W	UBP14	P38237	781 aa	Known RBP	2.1	□□□□□ -2.07
CLU1	YMR012W	YAP3	P38749	330 aa		2.1	□□□□□ -2.07
CLU1	YMR012W	HGH1	P48362	394 aa	Known RBP	2.1	□□□□□ -2.07
CLU1	YMR012W	MTO1	P53070	669 aa		2.1	□□□□□ -2.07
CLU1	YMR012W	BUD21	Q08492	214 aa	Predicted RBP	2.1	□□□□□ -2.07
CLU1	YMR012W	SRF1	Q12516	437 aa		2.1	□□□□□ -2.07
CLU1	YMR012W	RSF2	P46974	1380 aa		2.1	□□□□□ -2.07
CLU1	YMR012W	SPT7	P35177	1332 aa		2.09	□□□□□ -2.07
CLU1	YMR012W	GEA1	P47102	1408 aa	Predicted RBP	2.09	□□□□□ -2.07
CLU1	YMR012W	TTI1	P36097	1038 aa		2.09	□□□□□ -2.07
CLU1	YMR012W	TIF11	P38912	153 aa	Known RBP	2.09	□□□□□ -2.07
CLU1	YMR012W	FKH1	P40466	484 aa		2.09	□□□□□ -2.07
CLU1	YMR012W	CST6	P40535	587 aa		2.09	□□□□□ -2.07
CLU1	YMR012W	MRX12	P47084	519 aa		2.09	□□□□□ -2.07
CLU1	YMR012W	PUS5	Q06244	254 aa		2.09	□□□□□ -2.07
CLU1	YMR012W	PUP1	P25043	261 aa		2.09	□□□□□ -2.08
CLU1	YMR012W	ERP5	P38819	212 aa		2.09	□□□□□ -2.08
CLU1	YMR012W	YLL066C	Q99208	1374 aa		2.09	□□□□□ -2.08
CLU1	YMR012W	ENO2	P00925	437 aa	Known RBP	2.08	□□□□□ -2.08
CLU1	YMR012W	CDC3	P32457	520 aa	Known RBP	2.08	□□□□□ -2.08
CLU1	YMR012W	SEC8	P32855	1065 aa		2.08	□□□□□ -2.08
CLU1	YMR012W	DSF2	P38213	736 aa		2.08	□□□□□ -2.08
CLU1	YMR012W	KAR5	Q04746	504 aa		2.08	□□□□□ -2.08
CLU1	YMR012W	GCN2	P15442	1659 aa		2.08	□□□□□ -2.08
CLU1	YMR012W	SET4	P42948	560 aa		2.08	□□□□□ -2.08
CLU1	YMR012W	ORC1	P54784	914 aa	Predicted RBP	2.08	□□□□□ -2.08
CLU1	YMR012W	TUM1	Q08686	304 aa	Known RBP	2.08	□□□□□ -2.08
CLU1	YMR012W	AIR2	Q12476	344 aa	Known RBP	2.08	□□□□□ -2.08
CLU1	YMR012W	VPS29	P38759	282 aa		2.08	□□□□□ -2.08
CLU1	YMR012W	YNR021W	P53723	404 aa	Known RBP	2.08	□□□□□ -2.08
CLU1	YMR012W	WSC3	Q12215	556 aa		2.08	□□□□□ -2.08
CLU1	YMR012W	CYT1	P07143	309 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	SLY41	P22215	453 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	SLD2	P34252	453 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	2.07	□□□□□ -2.08	not detected
CLU1	YMR012W	BMT6	Q12291	365 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	PDR11	P40550	1411 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	SDH2	P21801	266 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	YHL050C	P38721	697 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	YHR219W	P38900	624 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	RAD59	Q12223	238 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	YEL077C	Q3E7X8	1277 aa		2.07	□□□□□ -2.08
CLU1	YMR012W	STH1	P32597	1359 aa		2.06	□□□□□ -2.08
CLU1	YMR012W	TPS3	P38426	1054 aa	Known RBP	2.06	□□□□□ -2.08
CLU1	YMR012W	GLO3	P38682	493 aa	Known RBP	2.06	□□□□□ -2.08
CLU1	YMR012W	ECM16	Q04217	1267 aa	Known RBP	2.06	□□□□□ -2.08
CLU1	YMR012W	ATH1	P48016	1211 aa		2.06	□□□□□ -2.08
CLU1	YMR012W	SNU71	P53207	620 aa	Known RBP	2.06	□□□□□ -2.08
CLU1	YMR012W	NIS1	P53939	407 aa		2.06	□□□□□ -2.08
CLU1	YMR012W	PTC3	P34221	468 aa	Known RBP	2.06	□□□□□ -2.08
CLU1	YMR012W	EAP1	P36041	632 aa	Known RBP	2.06	□□□□□ -2.08
CLU1	YMR012W	FYV10	P40492	516 aa		2.05	□□□□□ -2.08
CLU1	YMR012W	TEA1	P47988	759 aa		2.05	□□□□□ -2.08
CLU1	YMR012W	ERF2	Q06551	359 aa		2.05	□□□□□ -2.08
CLU1	YMR012W	CDC53	Q12018	815 aa	Known RBP	2.05	□□□□□ -2.08
CLU1	YMR012W	PDI1	P17967	522 aa	Known RBP	2.05	□□□□□ -2.08
CLU1	YMR012W	SPC42	P36094	363 aa		2.05	□□□□□ -2.08
CLU1	YMR012W	RAD54	P32863	898 aa		2.05	□□□□□ -2.08
CLU1	YMR012W	YPR109W	Q06104	294 aa		2.05	□□□□□ -2.08
CLU1	YMR012W	MSB4	Q12317	492 aa		2.05	□□□□□ -2.08
CLU1	YMR012W	TGL4	P36165	910 aa		2.04	□□□□□ -2.08
CLU1	YMR012W	MAD1	P40957	749 aa		2.04	□□□□□ -2.08

Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms