RNA–Protein interactions for RNA: YLR440C

SEC39, Transcript of Component of the Dsl1p tethering complex, yeast

Gene SEC39, Length 2,130 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC39	YLR440C	CLF1	Q12309	687 aa	Predicted RBP	5.93	□□□□□ -1.46
SEC39	YLR440C	RRP14	P36080	434 aa	Known RBP	5.93	□□□□□ -1.46
SEC39	YLR440C	PAM1	P37304	830 aa	Known RBP	5.93	□□□□□ -1.46
SEC39	YLR440C	NPR3	P38742	1146 aa		5.93	□□□□□ -1.46
SEC39	YLR440C	POL5	P39985	1022 aa	Known RBP	5.93	□□□□□ -1.46
SEC39	YLR440C	TAN1	P53072	289 aa	Predicted RBP	5.93	□□□□□ -1.46
SEC39	YLR440C	IMH1	Q06704	911 aa	Known RBP	5.93	□□□□□ -1.46
SEC39	YLR440C	TY1B-A	O13527	1196 aa	Known RBP	5.92	□□□□□ -1.46
SEC39	YLR440C	RPA135	P22138	1203 aa	Known RBP	5.92	□□□□□ -1.46
SEC39	YLR440C	TOM20	P35180	183 aa		5.92	□□□□□ -1.46
SEC39	YLR440C	BLI1	P35727	113 aa		5.92	□□□□□ -1.46
SEC39	YLR440C	NOC2	P39744	710 aa	Known RBP	5.92	□□□□□ -1.46
SEC39	YLR440C	YAF9	P53930	226 aa		5.92	□□□□□ -1.46
SEC39	YLR440C	LTV1	P34078	463 aa		5.91	□□□□□ -1.46
SEC39	YLR440C	SAP190	P36123	1033 aa		5.91	□□□□□ -1.46
SEC39	YLR440C	ERP2	P39704	215 aa		5.91	□□□□□ -1.46
SEC39	YLR440C	VPS27	P40343	622 aa	Known RBP	5.91	□□□□□ -1.46
SEC39	YLR440C	MRX12	P47084	519 aa		5.91	□□□□□ -1.46
SEC39	YLR440C	NOP56	Q12460	504 aa	Known RBP RIP-Chip data	5.91	□□□□□ -1.46	not detected
SEC39	YLR440C	PIM1	P36775	1133 aa		5.9	□□□□□ -1.46
SEC39	YLR440C	BOI2	P39969	1040 aa		5.9	□□□□□ -1.46
SEC39	YLR440C	AIM20	P40451	204 aa		5.9	□□□□□ -1.46
SEC39	YLR440C	TMA64	Q04600	565 aa	Known RBP	5.9	□□□□□ -1.46
SEC39	YLR440C	PMC1	P38929	1173 aa	Predicted RBP	5.9	□□□□□ -1.47
SEC39	YLR440C	IES1	P43579	692 aa		5.9	□□□□□ -1.47
SEC39	YLR440C	YDL121C	Q07541	149 aa		5.9	□□□□□ -1.47
SEC39	YLR440C	PUS1	Q12211	544 aa	Known RBP	5.9	□□□□□ -1.47
SEC39	YLR440C	NOP58	Q12499	511 aa	Known RBP	5.9	□□□□□ -1.47
SEC39	YLR440C	SEC3	P33332	1336 aa	Known RBP	5.89	□□□□□ -1.47
SEC39	YLR440C	OPI1	P21957	404 aa		5.89	□□□□□ -1.47
SEC39	YLR440C	VMA4	P22203	233 aa	Known RBP	5.89	□□□□□ -1.47
SEC39	YLR440C	YMR124W	P39523	943 aa	Known RBP	5.89	□□□□□ -1.47
SEC39	YLR440C	HEL2	Q05580	639 aa	Known RBP	5.89	□□□□□ -1.47
SEC39	YLR440C	RPN7	Q06103	429 aa	Known RBP	5.89	□□□□□ -1.47
SEC39	YLR440C	OCA5	P38738	679 aa		5.88	□□□□□ -1.47
SEC39	YLR440C	VID30	P53076	958 aa		5.88	□□□□□ -1.47
SEC39	YLR440C	HOS2	P53096	452 aa	Predicted RBP	5.88	□□□□□ -1.47
SEC39	YLR440C	HSP42	Q12329	375 aa		5.88	□□□□□ -1.47
SEC39	YLR440C	VPS5	Q92331	675 aa		5.88	□□□□□ -1.47
SEC39	YLR440C	TY4B-P	A0A0B7P3V8	1104 aa		5.87	□□□□□ -1.47
SEC39	YLR440C	PWP2	P25635	923 aa	Known RBP	5.87	□□□□□ -1.47
SEC39	YLR440C	ESF2	P53743	316 aa	Known RBP	5.87	□□□□□ -1.47
SEC39	YLR440C	ECM16	Q04217	1267 aa	Known RBP	5.87	□□□□□ -1.47
SEC39	YLR440C	TY4A-H	Q6Q5P6	413 aa		5.87	□□□□□ -1.47
SEC39	YLR440C	FAF1	P40546	346 aa	Predicted RBP	5.87	□□□□□ -1.47
SEC39	YLR440C	SRB8	P25648	1427 aa		5.87	□□□□□ -1.47
SEC39	YLR440C	SUP35	P05453	685 aa	Known RBP	5.86	□□□□□ -1.47
SEC39	YLR440C	TPM2	P40414	161 aa		5.86	□□□□□ -1.47
SEC39	YLR440C	RSC8	P43609	557 aa	Known RBP	5.86	□□□□□ -1.47
SEC39	YLR440C	USO1	P25386	1790 aa		5.86	□□□□□ -1.47
SEC39	YLR440C	CLC1	P17891	233 aa		5.86	□□□□□ -1.47
SEC39	YLR440C	DEP1	P31385	405 aa		5.86	□□□□□ -1.47
SEC39	YLR440C	ERP4	Q12450	207 aa		5.86	□□□□□ -1.47
SEC39	YLR440C	RPL5	P26321	297 aa	Known RBP	5.85	□□□□□ -1.47
SEC39	YLR440C	MUM2	P38236	366 aa		5.85	□□□□□ -1.47
SEC39	YLR440C	IPL1	P38991	367 aa		5.85	□□□□□ -1.47
SEC39	YLR440C	JIP5	Q06214	492 aa	Predicted RBP	5.85	□□□□□ -1.47
SEC39	YLR440C	GGA1	Q06336	557 aa		5.85	□□□□□ -1.47
SEC39	YLR440C	YPR172W	Q06608	200 aa		5.85	□□□□□ -1.47
SEC39	YLR440C	MSH3	P25336	1018 aa		5.84	□□□□□ -1.47
SEC39	YLR440C	BNI5	P53890	448 aa	Known RBP	5.84	□□□□□ -1.47
SEC39	YLR440C	SLD2	P34252	453 aa		5.84	□□□□□ -1.47
SEC39	YLR440C	HGH1	P48362	394 aa	Known RBP	5.84	□□□□□ -1.47
SEC39	YLR440C	PRP43	P53131	767 aa	Known RBP	5.84	□□□□□ -1.47
SEC39	YLR440C	ALD3	P54114	506 aa		5.84	□□□□□ -1.47
SEC39	YLR440C	IML1	P47170	1584 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	BYE1	P36106	594 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	RIA1	P53893	1110 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	RSC2	Q06488	889 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	SGT2	Q12118	346 aa	Known RBP	5.83	□□□□□ -1.48
SEC39	YLR440C	HAP1	P0CE41	1502 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	MSM1	P22438	575 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	NFU1	P32860	256 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	THI12	P42883	340 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	THI5	P43534	340 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	THI11	P47183	340 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	VTC3	Q02725	835 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	THI13	Q07748	340 aa		5.83	□□□□□ -1.48
SEC39	YLR440C	STE5	P32917	917 aa		5.82	□□□□□ -1.48
SEC39	YLR440C	TYS1	P36421	394 aa	Known RBP	5.82	□□□□□ -1.48
SEC39	YLR440C	BFA1	P47113	574 aa		5.82	□□□□□ -1.48
SEC39	YLR440C	CTF4	Q01454	927 aa		5.82	□□□□□ -1.48
SEC39	YLR440C	PRP3	Q03338	469 aa	Predicted RBP	5.82	□□□□□ -1.48
SEC39	YLR440C	SAC3	P46674	1301 aa		5.82	□□□□□ -1.48
SEC39	YLR440C	SPB4	P25808	606 aa	Predicted RBP	5.81	□□□□□ -1.48
SEC39	YLR440C	COG4	Q06096	861 aa		5.81	□□□□□ -1.48
SEC39	YLR440C	RRP15	Q06511	250 aa	Predicted RBP	5.81	□□□□□ -1.48
SEC39	YLR440C	GLE1	Q12315	538 aa		5.81	□□□□□ -1.48
SEC39	YLR440C	YVC1	Q12324	675 aa		5.81	□□□□□ -1.48
SEC39	YLR440C	CEX1	Q12453	761 aa		5.81	□□□□□ -1.48
SEC39	YLR440C	NUP188	P52593	1655 aa	Known RBP	5.81	□□□□□ -1.48
SEC39	YLR440C	RRN6	P32786	894 aa		5.81	□□□□□ -1.48
SEC39	YLR440C	ALD4	P46367	519 aa	Known RBP	5.81	□□□□□ -1.48
SEC39	YLR440C	RIX7	Q07844	837 aa	Known RBP	5.81	□□□□□ -1.48
SEC39	YLR440C	RPC82	P32349	654 aa		5.8	□□□□□ -1.48
SEC39	YLR440C	SIC1	P38634	284 aa		5.8	□□□□□ -1.48
SEC39	YLR440C	MGA2	P40578	1113 aa		5.8	□□□□□ -1.48
SEC39	YLR440C	ENT2	Q05785	613 aa		5.8	□□□□□ -1.48
SEC39	YLR440C	APC5	Q08683	685 aa		5.8	□□□□□ -1.48
SEC39	YLR440C	SNU66	Q12420	587 aa	Predicted RBP	5.8	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 7.6 ms