RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeastyeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SSL1YLR005W DOP1Q03921 1698 aa6.36□□□□□ -1.39
SSL1YLR005W TRM3Q07527 1436 aa6.36□□□□□ -1.39
SSL1YLR005W SDH2P21801 266 aa6.35□□□□□ -1.39
SSL1YLR005W SAS4Q04003 481 aa6.35□□□□□ -1.39
SSL1YLR005W PDR12Q02785 1511 aa6.35□□□□□ -1.39
SSL1YLR005W YTA7P40340 1379 aa6.35□□□□□ -1.39
SSL1YLR005W DIT2P21595 489 aa6.34□□□□□ -1.39
SSL1YLR005W PSE1P32337 1089 aaKnown RBP6.34□□□□□ -1.39
SSL1YLR005W NUP42P49686 430 aaKnown RBP6.34□□□□□ -1.39
SSL1YLR005W YOR093CQ12275 1648 aa6.34□□□□□ -1.39
SSL1YLR005W STH1P32597 1359 aa6.33□□□□□ -1.4
SSL1YLR005W TY1A-DR4O74302 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-HP0C2I4 478 aaKnown RBP6.32□□□□□ -1.4
SSL1YLR005W TY1A-AP0CX57 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-PR1P0CX58 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-ORP0CX59 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-PR2P0CX60 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-DR5P0CX65 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-ER2P0CX66 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-GR3P0CX67 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-LR1P0CX68 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-MR2P0CX69 440 aa6.32□□□□□ -1.4
SSL1YLR005W SEC2P17065 759 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-JR2P47099 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-DR1Q03856 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-ML1Q04706 440 aaKnown RBP6.32□□□□□ -1.4
SSL1YLR005W TY1A-BRQ12217 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-NL2Q12470 440 aa6.32□□□□□ -1.4
SSL1YLR005W TY1A-GR2Q12485 440 aa6.32□□□□□ -1.4
SSL1YLR005W ERF2Q06551 359 aa6.31□□□□□ -1.4
SSL1YLR005W BUD3P25558 1636 aa6.3□□□□□ -1.4
SSL1YLR005W KEX2P13134 814 aa6.3□□□□□ -1.4
SSL1YLR005W AMS1P22855 1083 aa6.3□□□□□ -1.4
SSL1YLR005W MET10P39692 1035 aa6.3□□□□□ -1.4
SSL1YLR005W GDB1Q06625 1536 aa6.3□□□□□ -1.4
SSL1YLR005W IQG1Q12280 1495 aa6.28□□□□□ -1.4
SSL1YLR005W PDR10P51533 1564 aa6.28□□□□□ -1.4
SSL1YLR005W SRC1Q03707 834 aa6.28□□□□□ -1.4
SSL1YLR005W MRF1P30775 413 aaPredicted RBP6.27□□□□□ -1.41
SSL1YLR005W SPT16P32558 1035 aaKnown RBP6.27□□□□□ -1.41
SSL1YLR005W CHC1P22137 1653 aaKnown RBP6.26□□□□□ -1.41
SSL1YLR005W RRN7P40992 514 aa6.26□□□□□ -1.41
SSL1YLR005W TEA1P47988 759 aa6.26□□□□□ -1.41
SSL1YLR005W YEL077CQ3E7X8 1277 aa6.26□□□□□ -1.41
SSL1YLR005W ERG12P07277 443 aa6.25□□□□□ -1.41
SSL1YLR005W CLB5P30283 435 aa6.25□□□□□ -1.41
SSL1YLR005W RTT106P40161 455 aa6.23□□□□□ -1.41
SSL1YLR005W NIS1P53939 407 aa6.22□□□□□ -1.41
SSL1YLR005W CST6P40535 587 aa6.21□□□□□ -1.41
SSL1YLR005W NUP157P40064 1391 aaKnown RBP6.21□□□□□ -1.42
SSL1YLR005W PDR15Q04182 1529 aaKnown RBP6.19□□□□□ -1.42
SSL1YLR005W PAT1P25644 796 aaKnown RBP6.19□□□□□ -1.42
SSL1YLR005W FRK1Q03002 865 aaPredicted RBP6.19□□□□□ -1.42
SSL1YLR005W DNF3Q12674 1656 aa6.19□□□□□ -1.42
SSL1YLR005W ARO1P08566 1588 aaKnown RBP6.19□□□□□ -1.42
SSL1YLR005W SIT4P20604 311 aa6.18□□□□□ -1.42
SSL1YLR005W PAC1P39946 494 aaKnown RBP6.18□□□□□ -1.42
SSL1YLR005W YNL115CP53925 644 aa6.18□□□□□ -1.42
SSL1YLR005W GLC3P32775 704 aa6.18□□□□□ -1.42
SSL1YLR005W CLA4P48562 842 aa6.18□□□□□ -1.42
SSL1YLR005W ATF2P53296 535 aa6.18□□□□□ -1.42
SSL1YLR005W TUB4P53378 473 aa6.18□□□□□ -1.42
SSL1YLR005W FPK1P53739 893 aa6.18□□□□□ -1.42
SSL1YLR005W AGE1Q04412 482 aa6.17□□□□□ -1.42
SSL1YLR005W LAM6Q08001 693 aa6.17□□□□□ -1.42
SSL1YLR005W BDP1P46678 594 aa6.16□□□□□ -1.42
SSL1YLR005W RTF1P53064 558 aa6.16□□□□□ -1.42
SSL1YLR005W SEC7P11075 2009 aaKnown RBP6.15□□□□□ -1.43
SSL1YLR005W TRK1P12685 1235 aa6.15□□□□□ -1.43
SSL1YLR005W SCJ1P25303 377 aa6.15□□□□□ -1.43
SSL1YLR005W AIR1P40507 360 aaKnown RBP6.15□□□□□ -1.43
SSL1YLR005W YMR196WQ04336 1088 aa6.15□□□□□ -1.43
SSL1YLR005W SLY41P22215 453 aa6.14□□□□□ -1.43
SSL1YLR005W YNR021WP53723 404 aaKnown RBP6.14□□□□□ -1.43
SSL1YLR005W CAT8P39113 1433 aa6.11□□□□□ -1.43
SSL1YLR005W TAF7Q05021 590 aa6.11□□□□□ -1.43
SSL1YLR005W PUS5Q06244 254 aa6.1□□□□□ -1.43
SSL1YLR005W TY3B-GQ99315 1547 aa6.1□□□□□ -1.43
SSL1YLR005W YBT1P32386 1661 aa6.1□□□□□ -1.43
SSL1YLR005W MOD5P07884 428 aa6.09□□□□□ -1.43
SSL1YLR005W TYW1Q08960 810 aaKnown RBP6.09□□□□□ -1.43
SSL1YLR005W MMP1Q12372 583 aa6.08□□□□□ -1.44
SSL1YLR005W HST2P53686 357 aa6.07□□□□□ -1.44
SSL1YLR005W ESS1P22696 170 aa6.06□□□□□ -1.44
SSL1YLR005W GLN1P32288 370 aaKnown RBP6.06□□□□□ -1.44
SSL1YLR005W KXD1P53158 218 aa6.06□□□□□ -1.44
SSL1YLR005W PUS6P53294 404 aa6.05□□□□□ -1.44
SSL1YLR005W HED1Q03937 162 aa6.05□□□□□ -1.44
SSL1YLR005W PDC1P06169 563 aaKnown RBP6.04□□□□□ -1.44
SSL1YLR005W TRM1P15565 570 aaKnown RBP6.04□□□□□ -1.44
SSL1YLR005W YJU3P28321 313 aa6.04□□□□□ -1.44
SSL1YLR005W YAP3P38749 330 aa6.04□□□□□ -1.44
SSL1YLR005W TBF1Q02457 562 aa6.04□□□□□ -1.44
SSL1YLR005W YDL206WQ12424 762 aa6.04□□□□□ -1.44
SSL1YLR005W GEA1P47102 1408 aaPredicted RBP6.03□□□□□ -1.44
SSL1YLR005W USO1P25386 1790 aa6.03□□□□□ -1.44
SSL1YLR005W BNR1P40450 1375 aa6.03□□□□□ -1.44
SSL1YLR005W CDC4P07834 779 aa6.03□□□□□ -1.44
SSL1YLR005W KTR1P27810 393 aaKnown RBP6.03□□□□□ -1.44
SSL1YLR005W HXT10P43581 546 aa6.03□□□□□ -1.44
Retrieved 100 of 5,963 RNA–protein pairs in 27.4 ms