RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeastyeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBA4YHR111W SPT7P35177 1332 aa13.35□□□□□ -0.27
UBA4YHR111W BDF1P35817 686 aa13.34□□□□□ -0.27
UBA4YHR111W HSP104P31539 908 aaKnown RBP13.33□□□□□ -0.28
UBA4YHR111W GRX1P25373 110 aaKnown RBP13.31□□□□□ -0.28
UBA4YHR111W AKL1P38080 1108 aaKnown RBP13.31□□□□□ -0.28
UBA4YHR111W CTF4Q01454 927 aa13.31□□□□□ -0.28
UBA4YHR111W RPG1P38249 964 aaKnown RBP13.3□□□□□ -0.28
UBA4YHR111W ALD3P54114 506 aa13.3□□□□□ -0.28
UBA4YHR111W NUP145P49687 1317 aa13.3□□□□□ -0.28
UBA4YHR111W YBP2P53169 641 aa13.29□□□□□ -0.28
UBA4YHR111W GRE2Q12068 342 aaKnown RBP13.29□□□□□ -0.28
UBA4YHR111W RAD4P14736 754 aa13.28□□□□□ -0.28
UBA4YHR111W PRY3P47033 881 aa13.28□□□□□ -0.28
UBA4YHR111W PSD2P53037 1138 aaKnown RBP13.28□□□□□ -0.28
UBA4YHR111W BUG1Q12191 341 aa13.28□□□□□ -0.28
UBA4YHR111W AOS1Q06624 347 aa13.24□□□□□ -0.29
UBA4YHR111W TUM1Q08686 304 aaKnown RBP13.23□□□□□ -0.29
UBA4YHR111W UTP22P53254 1237 aaPredicted RBP13.21□□□□□ -0.29
UBA4YHR111W RRP46P53256 223 aaPredicted RBP13.21□□□□□ -0.29
UBA4YHR111W SSA1P10591 642 aaKnown RBP13.2□□□□□ -0.3
UBA4YHR111W NTH2P35172 780 aa13.2□□□□□ -0.3
UBA4YHR111W TOS1P38288 455 aa13.19□□□□□ -0.3
UBA4YHR111W KCC4P25389 1037 aa13.17□□□□□ -0.3
UBA4YHR111W RMT2Q03305 412 aa13.17□□□□□ -0.3
UBA4YHR111W HPC2Q01448 625 aa13.15□□□□□ -0.3
UBA4YHR111W SAP155P43612 1002 aa13.13□□□□□ -0.31
UBA4YHR111W ALE1Q08548 619 aa13.13□□□□□ -0.31
UBA4YHR111W RTR1P40084 226 aaPredicted RBP13.13□□□□□ -0.31
UBA4YHR111W NYV1Q12255 253 aa13.13□□□□□ -0.31
UBA4YHR111W EAF6P47128 113 aa13.12□□□□□ -0.31
UBA4YHR111W IOC4Q04213 475 aa13.12□□□□□ -0.31
UBA4YHR111W NOP53Q12080 455 aaKnown RBP13.12□□□□□ -0.31
UBA4YHR111W BUD27P43573 796 aaKnown RBP RIP-Chip data13.11□□□□□ -0.31not detected
UBA4YHR111W YNL050CP53952 270 aa13.11□□□□□ -0.31
UBA4YHR111W RIX7Q07844 837 aaKnown RBP13.11□□□□□ -0.31
UBA4YHR111W UGA3P26370 528 aa13.1□□□□□ -0.31
UBA4YHR111W TEA1P47988 759 aa13.1□□□□□ -0.31
UBA4YHR111W PRD1P25375 712 aa13.09□□□□□ -0.31
UBA4YHR111W MSN5P52918 1224 aa13.09□□□□□ -0.31
UBA4YHR111W MDG1P53885 366 aa13.09□□□□□ -0.31
UBA4YHR111W NSE3Q05541 303 aa13.07□□□□□ -0.32
UBA4YHR111W PHM7Q12252 991 aa13.07□□□□□ -0.32
UBA4YHR111W RRT14P40470 206 aa13.06□□□□□ -0.32
UBA4YHR111W CTI6Q08923 506 aa13.06□□□□□ -0.32
UBA4YHR111W SER1P33330 395 aaKnown RBP13.04□□□□□ -0.32
UBA4YHR111W SSP2Q08646 371 aa13.04□□□□□ -0.32
UBA4YHR111W CTT1P06115 562 aa13.03□□□□□ -0.32
UBA4YHR111W YFR016CP43597 1233 aaKnown RBP13.03□□□□□ -0.32
UBA4YHR111W ZDS1P50111 915 aaKnown RBP13.02□□□□□ -0.33
UBA4YHR111W LPD1P09624 499 aaKnown RBP13.01□□□□□ -0.33
UBA4YHR111W YKL222CP35995 705 aa13.01□□□□□ -0.33
UBA4YHR111W ERT1P38140 529 aa13.01□□□□□ -0.33
UBA4YHR111W THI22Q06490 572 aa13.01□□□□□ -0.33
UBA4YHR111W UTP10P42945 1769 aaKnown RBP13□□□□□ -0.33
UBA4YHR111W MAM1P40065 302 aa13□□□□□ -0.33
UBA4YHR111W MPP10P47083 593 aaKnown RBP13□□□□□ -0.33
UBA4YHR111W YGL082WP53155 381 aa13□□□□□ -0.33
UBA4YHR111W LYS2P07702 1392 aa12.99□□□□□ -0.33
UBA4YHR111W CWH41P53008 833 aa12.99□□□□□ -0.33
UBA4YHR111W YER156CP40093 338 aaKnown RBP12.98□□□□□ -0.33
UBA4YHR111W KIN4Q01919 800 aa12.97□□□□□ -0.33
UBA4YHR111W BMS1Q08965 1183 aaKnown RBP12.97□□□□□ -0.33
UBA4YHR111W COQ4O13525 335 aa12.96□□□□□ -0.33
UBA4YHR111W ARG8P18544 423 aa12.96□□□□□ -0.33
UBA4YHR111W RAT1Q02792 1006 aaKnown RBP12.96□□□□□ -0.33
UBA4YHR111W YDL144CQ07589 356 aa12.96□□□□□ -0.33
UBA4YHR111W RTT109Q07794 436 aa12.96□□□□□ -0.33
UBA4YHR111W PFF1P38244 976 aa12.95□□□□□ -0.34
UBA4YHR111W YBR287WP38355 427 aa12.94□□□□□ -0.34
UBA4YHR111W DCD1P06773 312 aa12.93□□□□□ -0.34
UBA4YHR111W APL2P36000 726 aaPredicted RBP12.93□□□□□ -0.34
UBA4YHR111W GYP7P48365 746 aa12.93□□□□□ -0.34
UBA4YHR111W ZDS2P54786 942 aa12.93□□□□□ -0.34
UBA4YHR111W AAD16Q02895 342 aa12.93□□□□□ -0.34
UBA4YHR111W YPR204WQ08995 1032 aa12.92□□□□□ -0.34
UBA4YHR111W SMY1P32364 656 aaKnown RBP12.91□□□□□ -0.34
UBA4YHR111W VPS64Q03944 604 aa12.91□□□□□ -0.34
UBA4YHR111W BDF2Q07442 638 aa12.91□□□□□ -0.34
UBA4YHR111W TPD3P31383 635 aa12.9□□□□□ -0.34
UBA4YHR111W HEF3P53978 1044 aaKnown RBP12.9□□□□□ -0.34
UBA4YHR111W DIB1Q06819 143 aaPredicted RBP12.9□□□□□ -0.34
UBA4YHR111W YOL057WQ08225 711 aa12.89□□□□□ -0.35
UBA4YHR111W IRC3Q06683 689 aa12.88□□□□□ -0.35
UBA4YHR111W SQS1P53866 767 aaKnown RBP12.88□□□□□ -0.35
UBA4YHR111W ERO1Q03103 563 aa12.88□□□□□ -0.35
UBA4YHR111W HAT1Q12341 374 aa12.85□□□□□ -0.35
UBA4YHR111W CAF20P12962 161 aaKnown RBP12.84□□□□□ -0.35
UBA4YHR111W SIT4P20604 311 aa12.84□□□□□ -0.35
UBA4YHR111W SRT1Q03175 343 aa12.84□□□□□ -0.35
UBA4YHR111W SSK22P25390 1331 aaPredicted RBP12.83□□□□□ -0.35
UBA4YHR111W PMD1P32634 1753 aa12.83□□□□□ -0.36
UBA4YHR111W DNM1P54861 757 aa12.83□□□□□ -0.36
UBA4YHR111W YLR271WQ06152 274 aa12.83□□□□□ -0.36
UBA4YHR111W TOP1P04786 769 aa12.81□□□□□ -0.36
UBA4YHR111W RPP0P05317 312 aaKnown RBP12.81□□□□□ -0.36
UBA4YHR111W ICL1P28240 557 aaPredicted RBP12.81□□□□□ -0.36
UBA4YHR111W UBP16Q02863 499 aa12.81□□□□□ -0.36
UBA4YHR111W PKH1Q03407 766 aa12.81□□□□□ -0.36
UBA4YHR111W SUI2P20459 304 aaKnown RBP12.8□□□□□ -0.36
UBA4YHR111W SYF1Q04048 859 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms