RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP42YDR235W YJR098CP47139 656 aa4.1□□□□□ -1.75
PRP42YDR235W PUS6P53294 404 aa4.1□□□□□ -1.75
PRP42YDR235W DLD1P32891 587 aa4.08□□□□□ -1.76
PRP42YDR235W NSG2P53898 299 aa4.08□□□□□ -1.76
PRP42YDR235W CCP1P00431 361 aa4.07□□□□□ -1.76
PRP42YDR235W CKB1P43639 278 aa4.07□□□□□ -1.76
PRP42YDR235W MAM3Q12296 706 aa4.07□□□□□ -1.76
PRP42YDR235W YBL086CP38177 466 aa4.06□□□□□ -1.76
PRP42YDR235W YMR196WQ04336 1088 aa4.06□□□□□ -1.76
PRP42YDR235W FPK1P53739 893 aa4.06□□□□□ -1.76
PRP42YDR235W JJJ3P47138 172 aa4.05□□□□□ -1.76
PRP42YDR235W THI72Q08579 599 aa4.05□□□□□ -1.76
PRP42YDR235W TRM1P15565 570 aaKnown RBP4.03□□□□□ -1.76
PRP42YDR235W BUB1P41695 1021 aaKnown RBP RIP-Chip data4.03□□□□□ -1.76not detected
PRP42YDR235W CCT8P47079 568 aaKnown RBP4.03□□□□□ -1.76
PRP42YDR235W IES2P40154 320 aa4.03□□□□□ -1.77
PRP42YDR235W VAC17P25591 423 aa4.02□□□□□ -1.77
PRP42YDR235W AI1P03875 834 aa4.01□□□□□ -1.77
PRP42YDR235W SBP1P10080 294 aaKnown RBP4□□□□□ -1.77
PRP42YDR235W SCJ1P25303 377 aa4□□□□□ -1.77
PRP42YDR235W YFL066CP43538 392 aa4□□□□□ -1.77
PRP42YDR235W APP1P53933 587 aa4□□□□□ -1.77
PRP42YDR235W EMW1P42842 904 aaKnown RBP3.99□□□□□ -1.77
PRP42YDR235W NUP42P49686 430 aaKnown RBP3.99□□□□□ -1.77
PRP42YDR235W NAM8Q00539 523 aaKnown RBP3.99□□□□□ -1.77
PRP42YDR235W DSF2P38213 736 aa3.98□□□□□ -1.77
PRP42YDR235W ITT1Q04638 464 aa3.98□□□□□ -1.77
PRP42YDR235W CDC19P00549 500 aaKnown RBP3.97□□□□□ -1.77
PRP42YDR235W HST2P53686 357 aa3.96□□□□□ -1.78
PRP42YDR235W MMP1Q12372 583 aa3.96□□□□□ -1.78
PRP42YDR235W YPR053CQ6Q5F3 151 aa3.96□□□□□ -1.78
PRP42YDR235W DIT2P21595 489 aa3.95□□□□□ -1.78
PRP42YDR235W DFG5Q05031 458 aa3.95□□□□□ -1.78
PRP42YDR235W CUZ1P53899 274 aa3.94□□□□□ -1.78
PRP42YDR235W MKS1P34072 584 aa3.93□□□□□ -1.78
PRP42YDR235W CEM1P39525 442 aa3.93□□□□□ -1.78
PRP42YDR235W SKN7P38889 622 aa3.92□□□□□ -1.78
PRP42YDR235W BDS1Q08347 646 aa3.92□□□□□ -1.78
PRP42YDR235W GLN1P32288 370 aaKnown RBP3.92□□□□□ -1.78
PRP42YDR235W ESS1P22696 170 aa3.91□□□□□ -1.78
PRP42YDR235W VTC4P47075 721 aa3.91□□□□□ -1.78
PRP42YDR235W ADE12P80210 433 aaKnown RBP3.91□□□□□ -1.78
PRP42YDR235W YMR187CQ03236 431 aa3.91□□□□□ -1.78
PRP42YDR235W TDA6Q06466 467 aa3.9□□□□□ -1.79
PRP42YDR235W YJU3P28321 313 aa3.88□□□□□ -1.79
PRP42YDR235W SBE2P42223 864 aaKnown RBP3.88□□□□□ -1.79
PRP42YDR235W STE6P12866 1290 aa3.87□□□□□ -1.79
PRP42YDR235W DAL1P32375 460 aa3.87□□□□□ -1.79
PRP42YDR235W FBP26P32604 452 aa3.87□□□□□ -1.79
PRP42YDR235W RSC30P38781 883 aa3.87□□□□□ -1.79
PRP42YDR235W YMR265CQ03508 461 aaKnown RBP3.87□□□□□ -1.79
PRP42YDR235W SYT1Q06836 1226 aa3.87□□□□□ -1.79
PRP42YDR235W FIG4P42837 879 aa3.86□□□□□ -1.79
PRP42YDR235W DIT1P21623 536 aa3.85□□□□□ -1.79
PRP42YDR235W SPB4P25808 606 aaPredicted RBP3.84□□□□□ -1.79
PRP42YDR235W MCX1P38323 520 aaPredicted RBP3.84□□□□□ -1.8
PRP42YDR235W YNR014WP53719 212 aa3.84□□□□□ -1.8
PRP42YDR235W KRE33P53914 1056 aaKnown RBP3.84□□□□□ -1.8
PRP42YDR235W UBP15P50101 1230 aa3.82□□□□□ -1.8
PRP42YDR235W ATF2P53296 535 aa3.82□□□□□ -1.8
PRP42YDR235W YDR461C-AQ2V2P7 80 aa3.82□□□□□ -1.8
PRP42YDR235W PKH3Q03306 898 aaPredicted RBP3.81□□□□□ -1.8
PRP42YDR235W ARG8P18544 423 aa3.81□□□□□ -1.8
PRP42YDR235W YCK2P23292 546 aaKnown RBP3.81□□□□□ -1.8
PRP42YDR235W DLD3P39976 496 aaKnown RBP3.81□□□□□ -1.8
PRP42YDR235W ISU1Q03020 165 aa3.81□□□□□ -1.8
PRP42YDR235W TEC1P18412 486 aa3.8□□□□□ -1.8
PRP42YDR235W AMN1P38285 549 aaPredicted RBP3.79□□□□□ -1.8
PRP42YDR235W BOI2P39969 1040 aa3.79□□□□□ -1.8
PRP42YDR235W RPP2BP02400 110 aaKnown RBP3.78□□□□□ -1.8
PRP42YDR235W MAC1P35192 417 aa3.78□□□□□ -1.8
PRP42YDR235W LSB6P42951 607 aa3.78□□□□□ -1.8
PRP42YDR235W YDR215CQ12240 137 aa3.78□□□□□ -1.8
PRP42YDR235W SLN1P39928 1220 aaPredicted RBP3.77□□□□□ -1.81
PRP42YDR235W YPR084WQ06821 456 aa3.77□□□□□ -1.81
PRP42YDR235W ATG20Q07528 640 aa3.77□□□□□ -1.81
PRP42YDR235W MCA1Q08601 432 aa3.77□□□□□ -1.81
PRP42YDR235W GPM1P00950 247 aaKnown RBP3.77□□□□□ -1.81
PRP42YDR235W SLA1P32790 1244 aa3.77□□□□□ -1.81
PRP42YDR235W MSN5P52918 1224 aa3.77□□□□□ -1.81
PRP42YDR235W KTR1P27810 393 aaKnown RBP3.75□□□□□ -1.81
PRP42YDR235W TAT1P38085 619 aa3.75□□□□□ -1.81
PRP42YDR235W SSN3P39073 555 aa3.75□□□□□ -1.81
PRP42YDR235W SAS10Q12136 610 aaPredicted RBP3.75□□□□□ -1.81
PRP42YDR235W TY1A-DR3Q12441 440 aa3.75□□□□□ -1.81
PRP42YDR235W GUT2P32191 649 aa3.74□□□□□ -1.81
PRP42YDR235W MET1P36150 593 aa3.74□□□□□ -1.81
PRP42YDR235W AHP1P38013 176 aaKnown RBP3.73□□□□□ -1.81
PRP42YDR235W IRC24P40580 263 aa3.73□□□□□ -1.81
PRP42YDR235W GLT1Q12680 2145 aaKnown RBP3.73□□□□□ -1.81
PRP42YDR235W FPS1P23900 669 aa3.73□□□□□ -1.81
PRP42YDR235W WTM2Q12206 467 aa3.73□□□□□ -1.81
PRP42YDR235W RAD59Q12223 238 aa3.71□□□□□ -1.82
PRP42YDR235W ALO1P54783 526 aaKnown RBP3.7□□□□□ -1.82
PRP42YDR235W DAT1P13483 248 aaKnown RBP3.7□□□□□ -1.82
PRP42YDR235W KNS1P32350 737 aaPredicted RBP3.69□□□□□ -1.82
PRP42YDR235W PRY1P47032 299 aa3.69□□□□□ -1.82
PRP42YDR235W CSN12P47130 423 aa3.69□□□□□ -1.82
PRP42YDR235W NAF1P53919 492 aaKnown RBP3.69□□□□□ -1.82
PRP42YDR235W YPL034WQ03083 165 aa3.69□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 122.3 ms