RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	CSE4	P36012	229 aa		3.97	□□□□□ -1.77
NCL1	YBL024W	TFB3	Q03290	321 aa		3.97	□□□□□ -1.77
NCL1	YBL024W	RTT106	P40161	455 aa		3.96	□□□□□ -1.78
NCL1	YBL024W	FIG4	P42837	879 aa		3.96	□□□□□ -1.78
NCL1	YBL024W	SRF1	Q12516	437 aa		3.96	□□□□□ -1.78
NCL1	YBL024W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	3.95	□□□□□ -1.78	not detected
NCL1	YBL024W	MRT4	P33201	236 aa	Known RBP	3.95	□□□□□ -1.78
NCL1	YBL024W	MSB3	P48566	633 aa	Predicted RBP	3.95	□□□□□ -1.78
NCL1	YBL024W	NAF1	P53919	492 aa	Known RBP	3.95	□□□□□ -1.78
NCL1	YBL024W	SPT5	P27692	1063 aa	Known RBP	3.94	□□□□□ -1.78
NCL1	YBL024W	GUT2	P32191	649 aa		3.94	□□□□□ -1.78
NCL1	YBL024W	YJR115W	P47152	169 aa		3.94	□□□□□ -1.78
NCL1	YBL024W	GAR1	P28007	205 aa	Known RBP	3.93	□□□□□ -1.78
NCL1	YBL024W	APP1	P53933	587 aa		3.93	□□□□□ -1.78
NCL1	YBL024W	STE20	Q03497	939 aa	Known RBP	3.92	□□□□□ -1.78
NCL1	YBL024W	PKC1	P24583	1151 aa		3.91	□□□□□ -1.78
NCL1	YBL024W	MKS1	P34072	584 aa		3.91	□□□□□ -1.78
NCL1	YBL024W	EMW1	P42842	904 aa	Known RBP	3.91	□□□□□ -1.78
NCL1	YBL024W	PTK2	P47116	818 aa	Known RBP	3.91	□□□□□ -1.78
NCL1	YBL024W	ITT1	Q04638	464 aa		3.91	□□□□□ -1.78
NCL1	YBL024W	ARG82	P07250	355 aa		3.91	□□□□□ -1.78
NCL1	YBL024W	MET22	P32179	357 aa		3.91	□□□□□ -1.78
NCL1	YBL024W	ENV9	Q08651	330 aa		3.91	□□□□□ -1.78
NCL1	YBL024W	YBL086C	P38177	466 aa		3.9	□□□□□ -1.78
NCL1	YBL024W	YDR444W	Q04093	687 aa		3.9	□□□□□ -1.78
NCL1	YBL024W	YLR346C	Q06139	101 aa		3.9	□□□□□ -1.78
NCL1	YBL024W	YPP1	P46951	817 aa		3.9	□□□□□ -1.79
NCL1	YBL024W	MRX12	P47084	519 aa		3.9	□□□□□ -1.79
NCL1	YBL024W	YPR084W	Q06821	456 aa		3.9	□□□□□ -1.79
NCL1	YBL024W	FRA1	Q07825	749 aa		3.89	□□□□□ -1.79
NCL1	YBL024W	MCM16	Q12262	181 aa		3.89	□□□□□ -1.79
NCL1	YBL024W	RPP2B	P02400	110 aa	Known RBP	3.88	□□□□□ -1.79
NCL1	YBL024W	BIO2	P32451	375 aa		3.88	□□□□□ -1.79
NCL1	YBL024W	NUP85	P46673	744 aa		3.88	□□□□□ -1.79
NCL1	YBL024W	YJL007C	P47080	104 aa		3.88	□□□□□ -1.79
NCL1	YBL024W	DFG5	Q05031	458 aa		3.88	□□□□□ -1.79
NCL1	YBL024W	LCB5	Q06147	687 aa	Known RBP	3.88	□□□□□ -1.79
NCL1	YBL024W	ATG3	P40344	310 aa		3.88	□□□□□ -1.79
NCL1	YBL024W	RPL34B	P40525	121 aa	Known RBP	3.88	□□□□□ -1.79
NCL1	YBL024W	EMP47	P43555	445 aa		3.88	□□□□□ -1.79
NCL1	YBL024W	ATG20	Q07528	640 aa		3.88	□□□□□ -1.79
NCL1	YBL024W	BDS1	Q08347	646 aa		3.88	□□□□□ -1.79
NCL1	YBL024W	YDJ1	P25491	409 aa	Known RBP	3.87	□□□□□ -1.79
NCL1	YBL024W	FBP26	P32604	452 aa		3.87	□□□□□ -1.79
NCL1	YBL024W	AAD14	P42884	376 aa		3.87	□□□□□ -1.79
NCL1	YBL024W	YNL108C	P53929	270 aa		3.87	□□□□□ -1.79
NCL1	YBL024W	ISF1	P32488	338 aa		3.86	□□□□□ -1.79
NCL1	YBL024W	LSC2	P53312	427 aa		3.86	□□□□□ -1.79
NCL1	YBL024W	MIP1	P15801	1254 aa		3.85	□□□□□ -1.79
NCL1	YBL024W	DLD3	P39976	496 aa	Known RBP	3.85	□□□□□ -1.79
NCL1	YBL024W	BIM1	P40013	344 aa		3.85	□□□□□ -1.79
NCL1	YBL024W	OPT2	Q06593	877 aa		3.85	□□□□□ -1.79
NCL1	YBL024W	SUP45	P12385	437 aa	Known RBP	3.84	□□□□□ -1.79
NCL1	YBL024W	ISU1	Q03020	165 aa		3.84	□□□□□ -1.79
NCL1	YBL024W	ENO2	P00925	437 aa	Known RBP	3.83	□□□□□ -1.8
NCL1	YBL024W	STE6	P12866	1290 aa		3.83	□□□□□ -1.8
NCL1	YBL024W	GLY1	P37303	387 aa	Known RBP	3.83	□□□□□ -1.8
NCL1	YBL024W	ATG32	P40458	529 aa		3.83	□□□□□ -1.8
NCL1	YBL024W	SCW11	P53189	542 aa		3.83	□□□□□ -1.8
NCL1	YBL024W	UBP2	Q01476	1272 aa		3.83	□□□□□ -1.8
NCL1	YBL024W	ISR1	Q06098	443 aa	Known RBP	3.83	□□□□□ -1.8
NCL1	YBL024W	DLD1	P32891	587 aa		3.83	□□□□□ -1.8
NCL1	YBL024W	YPL062W	Q02781	134 aa		3.83	□□□□□ -1.8
NCL1	YBL024W	DAT1	P13483	248 aa	Known RBP	3.82	□□□□□ -1.8
NCL1	YBL024W	UTR2	P32623	467 aa		3.82	□□□□□ -1.8
NCL1	YBL024W	TBS1	P38114	1094 aa		3.82	□□□□□ -1.8
NCL1	YBL024W	SOH1	P38633	127 aa		3.82	□□□□□ -1.8
NCL1	YBL024W	YJR098C	P47139	656 aa		3.82	□□□□□ -1.8
NCL1	YBL024W	UTP13	Q05946	817 aa	Known RBP	3.82	□□□□□ -1.8
NCL1	YBL024W	TIF1	P10081	395 aa	Known RBP	3.81	□□□□□ -1.8
NCL1	YBL024W	APL6	P46682	809 aa		3.81	□□□□□ -1.8
NCL1	YBL024W	RIM21	P48565	533 aa		3.81	□□□□□ -1.8
NCL1	YBL024W	TCB1	Q12466	1186 aa		3.81	□□□□□ -1.8
NCL1	YBL024W	RTG2	P32608	588 aa	Known RBP	3.8	□□□□□ -1.8
NCL1	YBL024W	RGA1	P39083	1007 aa		3.8	□□□□□ -1.8
NCL1	YBL024W	CAF120	P53836	1060 aa		3.8	□□□□□ -1.8
NCL1	YBL024W	SPT2	P06843	333 aa	Predicted RBP	3.8	□□□□□ -1.8
NCL1	YBL024W	WTM2	Q12206	467 aa		3.8	□□□□□ -1.8
NCL1	YBL024W	YPR204W	Q08995	1032 aa		3.79	□□□□□ -1.8
NCL1	YBL024W	TY1A-BL	Q12266	440 aa		3.79	□□□□□ -1.8
NCL1	YBL024W	ENO1	P00924	437 aa	Known RBP	3.79	□□□□□ -1.8
NCL1	YBL024W	ACO2	P39533	789 aa		3.79	□□□□□ -1.8
NCL1	YBL024W	SUB2	Q07478	446 aa	Known RBP	3.79	□□□□□ -1.8
NCL1	YBL024W	HAL5	P38970	855 aa	Known RBP	3.78	□□□□□ -1.8
NCL1	YBL024W	YFL034W	P43564	1073 aa		3.77	□□□□□ -1.81
NCL1	YBL024W	MRX10	Q05648	414 aa		3.77	□□□□□ -1.81
NCL1	YBL024W	HDA3	Q06623	655 aa		3.77	□□□□□ -1.81
NCL1	YBL024W	YDL176W	Q12027	708 aa		3.77	□□□□□ -1.81
NCL1	YBL024W	SSA1	P10591	642 aa	Known RBP	3.76	□□□□□ -1.81
NCL1	YBL024W	SIS2	P36024	562 aa		3.76	□□□□□ -1.81
NCL1	YBL024W	OSH7	P38755	437 aa		3.76	□□□□□ -1.81
NCL1	YBL024W	YIR007W	P40566	764 aa		3.76	□□□□□ -1.81
NCL1	YBL024W	VTC4	P47075	721 aa		3.76	□□□□□ -1.81
NCL1	YBL024W	RDS2	P19541	446 aa	Known RBP	3.75	□□□□□ -1.81
NCL1	YBL024W	AHP1	P38013	176 aa	Known RBP	3.75	□□□□□ -1.81
NCL1	YBL024W	UTP7	P40055	554 aa	Known RBP	3.75	□□□□□ -1.81
NCL1	YBL024W	ALA1	P40825	983 aa	Known RBP	3.75	□□□□□ -1.81
NCL1	YBL024W	CPS1	P27614	576 aa		3.75	□□□□□ -1.81
NCL1	YBL024W	SLX8	P40072	274 aa		3.75	□□□□□ -1.81
NCL1	YBL024W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	3.75	□□□□□ -1.81	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms