RNA–Protein interactions for RNA: ENST00000641371.1

PHGDH-215, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 725 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-215ENST00000641371 PKD2Q13563 968 aa13.93□□□□□ -0.18
PHGDH-215ENST00000641371 AFAP1Q8N556 730 aa13.93□□□□□ -0.18
PHGDH-215ENST00000641371 TRHP20396 242 aaPredicted RBP13.91□□□□□ -0.18
PHGDH-215ENST00000641371 ATP10AO60312 1499 aa13.91□□□□□ -0.18
PHGDH-215ENST00000641371 PRDM15P57071 1507 aaPredicted RBP13.9□□□□□ -0.18
PHGDH-215ENST00000641371 RICTORQ6R327 1708 aa13.9□□□□□ -0.18
PHGDH-215ENST00000641371 A2MP01023 1474 aa13.9□□□□□ -0.18
PHGDH-215ENST00000641371 MYT1LQ9UL68 1186 aa13.89□□□□□ -0.19
PHGDH-215ENST00000641371 RNF17Q9BXT8 1623 aaKnown RBP13.89□□□□□ -0.19
PHGDH-215ENST00000641371 ZMYM4Q5VZL5 1548 aa13.89□□□□□ -0.19
PHGDH-215ENST00000641371 TET3O43151 1660 aa13.88□□□□□ -0.19
PHGDH-215ENST00000641371 VWDEQ8N2E2 1590 aa13.88□□□□□ -0.19
PHGDH-215ENST00000641371 FAM69CQ0P6D2 419 aa13.88□□□□□ -0.19
PHGDH-215ENST00000641371 LMTK2Q8IWU2 1503 aa13.86□□□□□ -0.19
PHGDH-215ENST00000641371 CCDC144AA2RUR9 1427 aa13.85□□□□□ -0.19
PHGDH-215ENST00000641371 KIF13AQ9H1H9 1805 aa13.85□□□□□ -0.19
PHGDH-215ENST00000641371 DIEXFQ68CQ4 756 aaKnown RBP13.84□□□□□ -0.19
PHGDH-215ENST00000641371 AEBP2Q6ZN18 517 aaPredicted RBP13.84□□□□□ -0.19
PHGDH-215ENST00000641371 PPRC1Q5VV67 1664 aaKnown RBP13.84□□□□□ -0.19
PHGDH-215ENST00000641371 REREQ9P2R6 1566 aa13.83□□□□□ -0.19
PHGDH-215ENST00000641371 ABCA6Q8N139 1617 aa13.83□□□□□ -0.2
PHGDH-215ENST00000641371 FOXD1Q16676 465 aa13.83□□□□□ -0.2
PHGDH-215ENST00000641371 L3MBTL2Q969R5 705 aa13.82□□□□□ -0.2
PHGDH-215ENST00000641371 STAC3Q96MF2 364 aa13.82□□□□□ -0.2
PHGDH-215ENST00000641371 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.82□□□□□ -0.25e-16■■□□□ 13.6
PHGDH-215ENST00000641371 NEURL4Q96JN8 1562 aa13.82□□□□□ -0.2
PHGDH-215ENST00000641371 DIP2CQ9Y2E4 1556 aa13.82□□□□□ -0.2
PHGDH-215ENST00000641371 ZC3H13Q5T200 1668 aaKnown RBP13.82□□□□□ -0.2
PHGDH-215ENST00000641371 TRPM2O94759 1503 aa13.81□□□□□ -0.2
PHGDH-215ENST00000641371 KIF3BO15066 747 aa13.81□□□□□ -0.2
PHGDH-215ENST00000641371 MROH1Q8NDA8 1641 aa13.81□□□□□ -0.2
PHGDH-215ENST00000641371 SPHKAPQ2M3C7 1700 aa13.81□□□□□ -0.2
PHGDH-215ENST00000641371 UHRF1BP1Q6BDS2 1440 aa13.81□□□□□ -0.2
PHGDH-215ENST00000641371 TSPOAP1O95153 1857 aa13.8□□□□□ -0.2
PHGDH-215ENST00000641371 FRMPD1Q5SYB0 1578 aa13.8□□□□□ -0.2
PHGDH-215ENST00000641371 E9PCH4 1651 aa13.8□□□□□ -0.2
PHGDH-215ENST00000641371 PTPRTO14522 1441 aa13.8□□□□□ -0.2
PHGDH-215ENST00000641371 EFCAB6Q5THR3 1501 aa13.8□□□□□ -0.2
PHGDH-215ENST00000641371 AGLP35573 1532 aa13.77□□□□□ -0.21
PHGDH-215ENST00000641371 PPP6R1Q9UPN7 881 aa13.77□□□□□ -0.21
PHGDH-215ENST00000641371 CEP152O94986 1710 aa13.76□□□□□ -0.21
PHGDH-215ENST00000641371 PLA2R1Q13018 1463 aa13.75□□□□□ -0.21
PHGDH-215ENST00000641371 RAPGEF3O95398 923 aa13.75□□□□□ -0.21
PHGDH-215ENST00000641371 RALGAPBQ86X10 1494 aa13.74□□□□□ -0.21
PHGDH-215ENST00000641371 EIF4G2P78344 907 aaKnown RBP eCLIP13.74□□□□□ -0.217e-14■■■■■ 63.8
PHGDH-215ENST00000641371 ARHGAP31Q2M1Z3 1444 aa13.73□□□□□ -0.21
PHGDH-215ENST00000641371 ABCC3O15438 1527 aa13.72□□□□□ -0.21
PHGDH-215ENST00000641371 ARHGEF40Q8TER5 1519 aa13.72□□□□□ -0.21
PHGDH-215ENST00000641371 CNTLNQ9NXG0 1405 aa13.72□□□□□ -0.21
PHGDH-215ENST00000641371 KIF1BO60333 1816 aa13.71□□□□□ -0.21
PHGDH-215ENST00000641371 CAMSAP1Q5T5Y3 1602 aa13.71□□□□□ -0.22
PHGDH-215ENST00000641371 LAMC1P11047 1609 aa13.7□□□□□ -0.22
PHGDH-215ENST00000641371 YEATS2Q9ULM3 1422 aa13.7□□□□□ -0.22
PHGDH-215ENST00000641371 SPATA31E1Q6ZUB1 1445 aa13.69□□□□□ -0.22
PHGDH-215ENST00000641371 CLTCL1P53675 1640 aa13.68□□□□□ -0.22
PHGDH-215ENST00000641371 WASHC2CQ9Y4E1 1318 aa13.68□□□□□ -0.22
PHGDH-215ENST00000641371 POLR1AO95602 1720 aaPredicted RBP13.68□□□□□ -0.22
PHGDH-215ENST00000641371 PRAG1Q86YV5 1406 aa13.67□□□□□ -0.22
PHGDH-215ENST00000641371 NPATQ14207 1427 aa13.66□□□□□ -0.22
PHGDH-215ENST00000641371 TRPM1Q7Z4N2 1603 aa13.66□□□□□ -0.22
PHGDH-215ENST00000641371 NBPF8Q3BBV2 869 aa13.66□□□□□ -0.22
PHGDH-215ENST00000641371 GGT6Q6P531 493 aa13.66□□□□□ -0.22
PHGDH-215ENST00000641371 DCAF11Q8TEB1 546 aa13.66□□□□□ -0.22
PHGDH-215ENST00000641371 ARID4BQ4LE39 1312 aaPredicted RBP13.65□□□□□ -0.22
PHGDH-215ENST00000641371 NOS1P29475 1434 aa13.64□□□□□ -0.23
PHGDH-215ENST00000641371 KIAA1210Q9ULL0 1709 aa13.64□□□□□ -0.23
PHGDH-215ENST00000641371 MYOM2P54296 1465 aa13.64□□□□□ -0.23
PHGDH-215ENST00000641371 GPRASP1Q5JY77 1395 aa13.64□□□□□ -0.23
PHGDH-215ENST00000641371 HSPA5P11021 654 aaKnown RBP13.63□□□□□ -0.23
PHGDH-215ENST00000641371 ADGRB3O60242 1522 aa13.62□□□□□ -0.23
PHGDH-215ENST00000641371 RPGRIP1LQ68CZ1 1315 aa13.62□□□□□ -0.23
PHGDH-215ENST00000641371 PIK3C2BO00750 1634 aa13.61□□□□□ -0.23
PHGDH-215ENST00000641371 ROCK2O75116 1388 aaKnown RBP13.61□□□□□ -0.23
PHGDH-215ENST00000641371 USP47Q96K76 1375 aa13.61□□□□□ -0.23
PHGDH-215ENST00000641371 SLC52A1Q9NWF4 448 aa13.61□□□□□ -0.23
PHGDH-215ENST00000641371 SLC24A1O60721 1099 aa13.6□□□□□ -0.23
PHGDH-215ENST00000641371 CARD11Q9BXL7 1154 aa13.6□□□□□ -0.23
PHGDH-215ENST00000641371 IFT172Q9UG01 1749 aa13.6□□□□□ -0.23
PHGDH-215ENST00000641371 MADDQ8WXG6 1647 aa13.6□□□□□ -0.23
PHGDH-215ENST00000641371 RGL3Q3MIN7 710 aa13.59□□□□□ -0.23
PHGDH-215ENST00000641371 ZNF326Q5BKZ1 582 aaKnown RBP13.59□□□□□ -0.23
PHGDH-215ENST00000641371 COL17A1Q9UMD9 1497 aaPredicted RBP13.59□□□□□ -0.23
PHGDH-215ENST00000641371 PREX1Q8TCU6 1659 aa13.59□□□□□ -0.23
PHGDH-215ENST00000641371 KDM2AQ9Y2K7 1162 aa13.58□□□□□ -0.24
PHGDH-215ENST00000641371 CCDC7Q96M83 1385 aa13.56□□□□□ -0.24
PHGDH-215ENST00000641371 NRXN1Q9ULB1 1477 aa13.55□□□□□ -0.24
PHGDH-215ENST00000641371 SYNMO15061 1565 aa13.55□□□□□ -0.24
PHGDH-215ENST00000641371 CFAP65Q6ZU64 1925 aaKnown RBP13.55□□□□□ -0.24
PHGDH-215ENST00000641371 ESF1Q9H501 851 aaKnown RBP13.55□□□□□ -0.24
PHGDH-215ENST00000641371 MROH2AA6NES4 1674 aa13.55□□□□□ -0.24
PHGDH-215ENST00000641371 SIGLEC1Q9BZZ2 1709 aa13.55□□□□□ -0.24
PHGDH-215ENST00000641371 PPLO60437 1756 aa13.55□□□□□ -0.24
PHGDH-215ENST00000641371 ERVK-7P63135 1459 aa13.55□□□□□ -0.24
PHGDH-215ENST00000641371 CLTCQ00610 1675 aaKnown RBP13.54□□□□□ -0.24
PHGDH-215ENST00000641371 EIF3AQ14152 1382 aaKnown RBP13.54□□□□□ -0.24
PHGDH-215ENST00000641371 SPATA31D1Q6ZQQ2 1576 aa13.54□□□□□ -0.24
PHGDH-215ENST00000641371 DDX10Q13206 875 aaKnown RBP13.53□□□□□ -0.24
PHGDH-215ENST00000641371 ZFYVE9O95405 1425 aa13.53□□□□□ -0.24
PHGDH-215ENST00000641371 SETBP1Q9Y6X0 1596 aa13.53□□□□□ -0.24
PHGDH-215ENST00000641371 ANP32CO43423 234 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms