RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.88■□□□□ 0.774e-8■■■□□ 16.7
GTF3A-209ENST00000640289 ESF1Q9H501 851 aaKnown RBP19.88■□□□□ 0.77
GTF3A-209ENST00000640289 RIMS1Q86UR5 1692 aaKnown RBP19.87■□□□□ 0.77
GTF3A-209ENST00000640289 FER1L4A9Z1Z3 1794 aa19.87■□□□□ 0.77
GTF3A-209ENST00000640289 PLPPR3Q6T4P5 718 aa19.86■□□□□ 0.77
GTF3A-209ENST00000640289 PTPRMP28827 1452 aa19.86■□□□□ 0.77
GTF3A-209ENST00000640289 PPP6R1Q9UPN7 881 aa19.85■□□□□ 0.77
GTF3A-209ENST00000640289 GCC2Q8IWJ2 1684 aa19.84■□□□□ 0.77
GTF3A-209ENST00000640289 WASHC2CQ9Y4E1 1318 aa19.84■□□□□ 0.77
GTF3A-209ENST00000640289 CEBPAP49715 358 aaPredicted RBP19.84■□□□□ 0.77
GTF3A-209ENST00000640289 PRDM15P57071 1507 aaPredicted RBP19.84■□□□□ 0.77
GTF3A-209ENST00000640289 DEPDC5O75140 1603 aa19.84■□□□□ 0.77
GTF3A-209ENST00000640289 CNTLNQ9NXG0 1405 aa19.83■□□□□ 0.76
GTF3A-209ENST00000640289 KDM5DQ9BY66 1539 aa19.82■□□□□ 0.76
GTF3A-209ENST00000640289 CLTCQ00610 1675 aaKnown RBP19.81■□□□□ 0.76
GTF3A-209ENST00000640289 TRIM26Q12899 539 aaPredicted RBP19.81■□□□□ 0.76
GTF3A-209ENST00000640289 ABCC3O15438 1527 aa19.81■□□□□ 0.76
GTF3A-209ENST00000640289 ZMYM3Q14202 1370 aa19.8■□□□□ 0.76
GTF3A-209ENST00000640289 KANK1Q14678 1352 aa19.8■□□□□ 0.76
GTF3A-209ENST00000640289 SETD5Q9C0A6 1442 aa19.79■□□□□ 0.76
GTF3A-209ENST00000640289 FAM135AQ9P2D6 1515 aa19.79■□□□□ 0.76
GTF3A-209ENST00000640289 UNC13BO14795 1591 aa19.78■□□□□ 0.76
GTF3A-209ENST00000640289 VWDEQ8N2E2 1590 aa19.78■□□□□ 0.76
GTF3A-209ENST00000640289 NUP155O75694 1391 aa19.77■□□□□ 0.76
GTF3A-209ENST00000640289 CEP152O94986 1710 aa19.76■□□□□ 0.75
GTF3A-209ENST00000640289 MROH2AA6NES4 1674 aa19.75■□□□□ 0.75
GTF3A-209ENST00000640289 AEBP2Q6ZN18 517 aaPredicted RBP19.75■□□□□ 0.75
GTF3A-209ENST00000640289 C3P01024 1663 aa19.75■□□□□ 0.75
GTF3A-209ENST00000640289 ZC3H13Q5T200 1668 aaKnown RBP19.75■□□□□ 0.75
GTF3A-209ENST00000640289 RAB3GAP2Q9H2M9 1393 aa19.74■□□□□ 0.75
GTF3A-209ENST00000640289 TRIM52Q96A61 297 aa19.74■□□□□ 0.75
GTF3A-209ENST00000640289 LMTK2Q8IWU2 1503 aa19.74■□□□□ 0.75
GTF3A-209ENST00000640289 FBXO31Q5XUX0 539 aaPredicted RBP19.72■□□□□ 0.75
GTF3A-209ENST00000640289 CAMSAP1Q5T5Y3 1602 aa19.72■□□□□ 0.75
GTF3A-209ENST00000640289 PZPP20742 1482 aa19.71■□□□□ 0.75
GTF3A-209ENST00000640289 IQGAP3Q86VI3 1631 aa19.7■□□□□ 0.74
GTF3A-209ENST00000640289 NPATQ14207 1427 aa19.69■□□□□ 0.74
GTF3A-209ENST00000640289 ARHGAP31Q2M1Z3 1444 aa19.68■□□□□ 0.74
GTF3A-209ENST00000640289 EFCAB6Q5THR3 1501 aa19.68■□□□□ 0.74
GTF3A-209ENST00000640289 TET3O43151 1660 aa19.66■□□□□ 0.74
GTF3A-209ENST00000640289 ERVK-7P63135 1459 aa19.64■□□□□ 0.73
GTF3A-209ENST00000640289 TNRQ92752 1358 aa19.63■□□□□ 0.73
GTF3A-209ENST00000640289 SLC4A1APQ9BWU0 796 aaKnown RBP19.63■□□□□ 0.73
GTF3A-209ENST00000640289 SPATA31D1Q6ZQQ2 1576 aa19.62■□□□□ 0.73
GTF3A-209ENST00000640289 HRCP23327 699 aa19.62■□□□□ 0.73
GTF3A-209ENST00000640289 PCGF6Q9BYE7 350 aa19.61■□□□□ 0.73
GTF3A-209ENST00000640289 E9PCH4 1651 aa19.61■□□□□ 0.73
GTF3A-209ENST00000640289 PKD2Q13563 968 aa19.6■□□□□ 0.73
GTF3A-209ENST00000640289 MPHOSPH9Q99550 1183 aa19.6■□□□□ 0.73
GTF3A-209ENST00000640289 RPRD2Q5VT52 1461 aaKnown RBP19.6■□□□□ 0.73
GTF3A-209ENST00000640289 PREX1Q8TCU6 1659 aa19.59■□□□□ 0.73
GTF3A-209ENST00000640289 NOS1P29475 1434 aa19.59■□□□□ 0.73
GTF3A-209ENST00000640289 ACIN1Q9UKV3 1341 aaKnown RBP19.58■□□□□ 0.73
GTF3A-209ENST00000640289 FOXD1Q16676 465 aa19.58■□□□□ 0.72
GTF3A-209ENST00000640289 UHRF1BP1Q6BDS2 1440 aa19.58■□□□□ 0.72
GTF3A-209ENST00000640289 LMTK3Q96Q04 1460 aa19.56■□□□□ 0.72
GTF3A-209ENST00000640289 MYO3AQ8NEV4 1616 aa19.56■□□□□ 0.72
GTF3A-209ENST00000640289 SYNMO15061 1565 aa19.55■□□□□ 0.72
GTF3A-209ENST00000640289 CFAP65Q6ZU64 1925 aaKnown RBP19.55■□□□□ 0.72
GTF3A-209ENST00000640289 HSPA2P54652 639 aa19.53■□□□□ 0.72
GTF3A-209ENST00000640289 IDI1Q13907 227 aa19.52■□□□□ 0.72
GTF3A-209ENST00000640289 A2ML1A8K2U0 1454 aa19.52■□□□□ 0.72
GTF3A-209ENST00000640289 NLRP1Q9C000 1473 aa19.52■□□□□ 0.72
GTF3A-209ENST00000640289 UGGT1Q9NYU2 1555 aa19.52■□□□□ 0.71
GTF3A-209ENST00000640289 PTPRTO14522 1441 aa19.51■□□□□ 0.71
GTF3A-209ENST00000640289 CEP170BQ9Y4F5 1589 aaPredicted RBP19.51■□□□□ 0.71
GTF3A-209ENST00000640289 SETD1BQ9UPS6 1966 aaKnown RBP19.5■□□□□ 0.71
GTF3A-209ENST00000640289 PLA2R1Q13018 1463 aa19.5■□□□□ 0.71
GTF3A-209ENST00000640289 SLC52A1Q9NWF4 448 aa19.49■□□□□ 0.71
GTF3A-209ENST00000640289 ZNF142P52746 1687 aaPredicted RBP19.48■□□□□ 0.71
GTF3A-209ENST00000640289 SPHKAPQ2M3C7 1700 aa19.47■□□□□ 0.71
GTF3A-209ENST00000640289 TRPM2O94759 1503 aa19.46■□□□□ 0.71
GTF3A-209ENST00000640289 PIK3C2BO00750 1634 aa19.46■□□□□ 0.71
GTF3A-209ENST00000640289 STAG3Q9UJ98 1225 aa19.44■□□□□ 0.7
GTF3A-209ENST00000640289 CHGAP10645 457 aaKnown RBP19.43■□□□□ 0.7
GTF3A-209ENST00000640289 THEMISQ8N1K5 641 aaPredicted RBP19.42■□□□□ 0.7
GTF3A-209ENST00000640289 CLTCL1P53675 1640 aa19.42■□□□□ 0.7
GTF3A-209ENST00000640289 DHX57Q6P158 1386 aaKnown RBP19.42■□□□□ 0.7
GTF3A-209ENST00000640289 ADGRB3O60242 1522 aa19.41■□□□□ 0.7
GTF3A-209ENST00000640289 UBR1Q8IWV7 1749 aa19.41■□□□□ 0.7
GTF3A-209ENST00000640289 ANKRD30BQ9BXX2 1392 aa19.41■□□□□ 0.7
GTF3A-209ENST00000640289 CCDC144AA2RUR9 1427 aa19.39■□□□□ 0.69
GTF3A-209ENST00000640289 TMEM131LA2VDJ0 1609 aa19.37■□□□□ 0.69
GTF3A-209ENST00000640289 NCKAP5LQ9HCH0 1330 aa19.37■□□□□ 0.69
GTF3A-209ENST00000640289 TMEM2Q9UHN6 1383 aa19.35■□□□□ 0.69
GTF3A-209ENST00000640289 ARHGAP23Q9P227 1491 aa19.35■□□□□ 0.69
GTF3A-209ENST00000640289 KDM5AP29375 1690 aaKnown RBP19.34■□□□□ 0.69
GTF3A-209ENST00000640289 SLIT1O75093 1534 aa19.34■□□□□ 0.69
GTF3A-209ENST00000640289 LTKP29376 864 aa19.33■□□□□ 0.68
GTF3A-209ENST00000640289 ZNF326Q5BKZ1 582 aaKnown RBP19.32■□□□□ 0.68
GTF3A-209ENST00000640289 ANKLE2Q86XL3 938 aa19.32■□□□□ 0.68
GTF3A-209ENST00000640289 MYO5BQ9ULV0 1848 aa19.31■□□□□ 0.68
GTF3A-209ENST00000640289 NUTM2DQ5VT03 806 aaPredicted RBP19.31■□□□□ 0.68
GTF3A-209ENST00000640289 TXNDC2Q86VQ3 553 aa19.31■□□□□ 0.68
GTF3A-209ENST00000640289 RIMS2Q9UQ26 1411 aa19.31■□□□□ 0.68
GTF3A-209ENST00000640289 STRCQ7RTU9 1775 aa19.31■□□□□ 0.68
GTF3A-209ENST00000640289 ZFYVE9O95405 1425 aa19.3■□□□□ 0.68
GTF3A-209ENST00000640289 SPATA31E1Q6ZUB1 1445 aa19.29■□□□□ 0.68
GTF3A-209ENST00000640289 RGL3Q3MIN7 710 aa19.29■□□□□ 0.68
GTF3A-209ENST00000640289 EID1Q9Y6B2 187 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms