RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 ST20-MTHFSA0A0A6YYL1 179 aa27.14■■□□□ 1.93
SYNGAP1-227ENST00000638142 RALBP1Q15311 655 aa27.14■■□□□ 1.93
SYNGAP1-227ENST00000638142 MYBBP1AQ9BQG0 1328 aaKnown RBP27.13■■□□□ 1.93
SYNGAP1-227ENST00000638142 MYT1LQ9UL68 1186 aa27.12■■□□□ 1.93
SYNGAP1-227ENST00000638142 CCDC141Q6ZP82 1450 aa27.11■■□□□ 1.93
SYNGAP1-227ENST00000638142 DCAF11Q8TEB1 546 aa27.11■■□□□ 1.93
SYNGAP1-227ENST00000638142 KDM2AQ9Y2K7 1162 aa27.11■■□□□ 1.93
SYNGAP1-227ENST00000638142 FAM135AQ9P2D6 1515 aa27.1■■□□□ 1.93
SYNGAP1-227ENST00000638142 HNRNPMP52272 730 aaKnown RBP eCLIP27.09■■□□□ 1.93
SYNGAP1-227ENST00000638142 RSPH4AQ5TD94 716 aa27.08■■□□□ 1.93
SYNGAP1-227ENST00000638142 CCDC136Q96JN2 1154 aa27.08■■□□□ 1.93
SYNGAP1-227ENST00000638142 PREX2Q70Z35 1606 aa27.07■■□□□ 1.92
SYNGAP1-227ENST00000638142 SAMD9LQ8IVG5 1584 aa27.07■■□□□ 1.92
SYNGAP1-227ENST00000638142 TRPM1Q7Z4N2 1603 aa27.05■■□□□ 1.92
SYNGAP1-227ENST00000638142 PRAG1Q86YV5 1406 aa27.04■■□□□ 1.92
SYNGAP1-227ENST00000638142 CDC42BPBQ9Y5S2 1711 aa27.04■■□□□ 1.92
SYNGAP1-227ENST00000638142 CCDC144AA2RUR9 1427 aa27.02■■□□□ 1.92
SYNGAP1-227ENST00000638142 MAST1Q9Y2H9 1570 aa26.99■■□□□ 1.91
SYNGAP1-227ENST00000638142 UNC13BO14795 1591 aa26.99■■□□□ 1.91
SYNGAP1-227ENST00000638142 PARD3Q8TEW0 1356 aa26.98■■□□□ 1.91
SYNGAP1-227ENST00000638142 GPRASP1Q5JY77 1395 aa26.98■■□□□ 1.91
SYNGAP1-227ENST00000638142 NLRP13Q86W25 1043 aa26.98■■□□□ 1.91
SYNGAP1-227ENST00000638142 LAMC1P11047 1609 aa26.97■■□□□ 1.91
SYNGAP1-227ENST00000638142 NOP58Q9Y2X3 529 aaKnown RBP26.93■■□□□ 1.9
SYNGAP1-227ENST00000638142 SYCP2Q9BX26 1530 aa26.92■■□□□ 1.9
SYNGAP1-227ENST00000638142 PDE3BQ13370 1112 aa26.92■■□□□ 1.9
SYNGAP1-227ENST00000638142 PLA2R1Q13018 1463 aa26.91■■□□□ 1.9
SYNGAP1-227ENST00000638142 COL17A1Q9UMD9 1497 aaPredicted RBP26.91■■□□□ 1.9
SYNGAP1-227ENST00000638142 WASHC2CQ9Y4E1 1318 aa26.91■■□□□ 1.9
SYNGAP1-227ENST00000638142 SENP3-EIF4A1A0A087X0R7 540 aa26.91■■□□□ 1.9
SYNGAP1-227ENST00000638142 RRP1P56182 461 aaKnown RBP26.91■■□□□ 1.9
SYNGAP1-227ENST00000638142 A2MP01023 1474 aa26.91■■□□□ 1.9
SYNGAP1-227ENST00000638142 PRDM15P57071 1507 aaPredicted RBP26.9■■□□□ 1.9
SYNGAP1-227ENST00000638142 PLXNC1O60486 1568 aa26.89■■□□□ 1.9
SYNGAP1-227ENST00000638142 IQGAP3Q86VI3 1631 aa26.89■■□□□ 1.9
SYNGAP1-227ENST00000638142 EIF2AK4Q9P2K8 1649 aaKnown RBP26.89■■□□□ 1.89
SYNGAP1-227ENST00000638142 PER1O15534 1290 aaPredicted RBP26.89■■□□□ 1.89
SYNGAP1-227ENST00000638142 INSRP06213 1382 aa26.88■■□□□ 1.89
SYNGAP1-227ENST00000638142 ARHGAP5Q13017 1502 aa26.87■■□□□ 1.89
SYNGAP1-227ENST00000638142 ZMYM4Q5VZL5 1548 aa26.87■■□□□ 1.89
SYNGAP1-227ENST00000638142 RCAN3Q9UKA8 241 aa26.86■■□□□ 1.89
SYNGAP1-227ENST00000638142 TTC37Q6PGP7 1564 aa26.86■■□□□ 1.89
SYNGAP1-227ENST00000638142 PLEKHH2Q8IVE3 1493 aa26.86■■□□□ 1.89
SYNGAP1-227ENST00000638142 NBPF1Q3BBV0 1214 aa26.85■■□□□ 1.89
SYNGAP1-227ENST00000638142 ANP32AP39687 249 aaKnown RBP26.85■■□□□ 1.89
SYNGAP1-227ENST00000638142 ATP10AO60312 1499 aa26.84■■□□□ 1.89
SYNGAP1-227ENST00000638142 RGL3Q3MIN7 710 aa26.84■■□□□ 1.89
SYNGAP1-227ENST00000638142 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.83■■□□□ 1.897e-8■□□□□ 9
SYNGAP1-227ENST00000638142 MYO5CQ9NQX4 1742 aa26.82■■□□□ 1.88
SYNGAP1-227ENST00000638142 TESK2Q96S53 571 aa26.82■■□□□ 1.88
SYNGAP1-227ENST00000638142 MAGI2Q86UL8 1455 aa26.8■■□□□ 1.88
SYNGAP1-227ENST00000638142 IPO9Q96P70 1041 aaKnown RBP26.8■■□□□ 1.88
SYNGAP1-227ENST00000638142 ERBINQ96RT1 1412 aa26.8■■□□□ 1.88
SYNGAP1-227ENST00000638142 DUOX2Q9NRD8 1548 aa26.8■■□□□ 1.88
SYNGAP1-227ENST00000638142 DISP3Q9P2K9 1392 aa26.8■■□□□ 1.88
SYNGAP1-227ENST00000638142 DEKP35659 375 aaKnown RBP26.78■■□□□ 1.88
SYNGAP1-227ENST00000638142 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.78■■□□□ 1.881e-6■■■■□ 21.3
SYNGAP1-227ENST00000638142 BLMP54132 1417 aaPredicted RBP26.78■■□□□ 1.88
SYNGAP1-227ENST00000638142 EXOC6Q8TAG9 804 aa26.77■■□□□ 1.88
SYNGAP1-227ENST00000638142 PAK3O75914 559 aaPredicted RBP26.76■■□□□ 1.87
SYNGAP1-227ENST00000638142 TMF1P82094 1093 aa26.75■■□□□ 1.87
SYNGAP1-227ENST00000638142 SHROOM2Q13796 1616 aa26.75■■□□□ 1.87
SYNGAP1-227ENST00000638142 RNF17Q9BXT8 1623 aaKnown RBP26.74■■□□□ 1.87
SYNGAP1-227ENST00000638142 TCERG1O14776 1098 aaKnown RBP26.74■■□□□ 1.87
SYNGAP1-227ENST00000638142 SALL2Q9Y467 1007 aaPredicted RBP26.73■■□□□ 1.87
SYNGAP1-227ENST00000638142 PANK3Q9H999 370 aa26.72■■□□□ 1.87
SYNGAP1-227ENST00000638142 ABCC2Q92887 1545 aa26.72■■□□□ 1.87
SYNGAP1-227ENST00000638142 CC2D1BQ5T0F9 858 aaKnown RBP26.71■■□□□ 1.87
SYNGAP1-227ENST00000638142 CHD1O14646 1710 aa26.69■■□□□ 1.86
SYNGAP1-227ENST00000638142 ZBTB47Q9UFB7 747 aaPredicted RBP26.68■■□□□ 1.86
SYNGAP1-227ENST00000638142 CDCA7LQ96GN5 454 aa26.67■■□□□ 1.86
SYNGAP1-227ENST00000638142 MS4A1P11836 297 aa26.65■■□□□ 1.86
SYNGAP1-227ENST00000638142 PLCH2O75038 1416 aa26.63■■□□□ 1.85
SYNGAP1-227ENST00000638142 NBR1Q14596 966 aa26.61■■□□□ 1.85
SYNGAP1-227ENST00000638142 MADDQ8WXG6 1647 aa26.6■■□□□ 1.85
SYNGAP1-227ENST00000638142 WDR7Q9Y4E6 1490 aa26.6■■□□□ 1.85
SYNGAP1-227ENST00000638142 IQGAP1P46940 1657 aa26.59■■□□□ 1.85
SYNGAP1-227ENST00000638142 ABCC1P33527 1531 aa26.59■■□□□ 1.85
SYNGAP1-227ENST00000638142 PDE4AP27815 886 aa26.58■■□□□ 1.85
SYNGAP1-227ENST00000638142 EFCAB2Q5VUJ9 269 aa26.58■■□□□ 1.85
SYNGAP1-227ENST00000638142 STAC3Q96MF2 364 aa26.56■■□□□ 1.84
SYNGAP1-227ENST00000638142 BACH2Q9BYV9 841 aa26.56■■□□□ 1.84
SYNGAP1-227ENST00000638142 TRPM2O94759 1503 aa26.55■■□□□ 1.84
SYNGAP1-227ENST00000638142 ERCC6L2Q5T890 1561 aa26.54■■□□□ 1.84
SYNGAP1-227ENST00000638142 SYNMO15061 1565 aa26.54■■□□□ 1.84
SYNGAP1-227ENST00000638142 CDCA8Q53HL2 280 aa26.54■■□□□ 1.84
SYNGAP1-227ENST00000638142 KNSTRNQ9Y448 316 aa26.54■■□□□ 1.84
SYNGAP1-227ENST00000638142 SPHKAPQ2M3C7 1700 aa26.53■■□□□ 1.84
SYNGAP1-227ENST00000638142 SCAPERQ9BY12 1400 aa26.53■■□□□ 1.84
SYNGAP1-227ENST00000638142 PLIN1O60240 522 aa26.52■■□□□ 1.84
SYNGAP1-227ENST00000638142 ADAMTS8Q9UP79 889 aa26.52■■□□□ 1.84
SYNGAP1-227ENST00000638142 SCAF11Q99590 1463 aaKnown RBP26.51■■□□□ 1.83
SYNGAP1-227ENST00000638142 TRAPPC8Q9Y2L5 1435 aa26.51■■□□□ 1.83
SYNGAP1-227ENST00000638142 CRBNQ96SW2 442 aa26.51■■□□□ 1.83
SYNGAP1-227ENST00000638142 CEP152O94986 1710 aa26.51■■□□□ 1.83
SYNGAP1-227ENST00000638142 ZCCHC11Q5TAX3 1644 aaKnown RBP26.51■■□□□ 1.83
SYNGAP1-227ENST00000638142 PPP2R1AP30153 589 aa26.5■■□□□ 1.83
SYNGAP1-227ENST00000638142 RTEL1-TNFRSF6BF6WH68 1400 aa26.5■■□□□ 1.83
SYNGAP1-227ENST00000638142 RTL5Q5HYW3 569 aaPredicted RBP26.49■■□□□ 1.83
SYNGAP1-227ENST00000638142 PTPRTO14522 1441 aa26.49■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms