RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 EIF2AK4Q9P2K8 1649 aaKnown RBP27.88■■■□□ 2.05
CLN3-258ENST00000637184 PZPP20742 1482 aa27.87■■■□□ 2.05
CLN3-258ENST00000637184 YEATS2Q9ULM3 1422 aa27.85■■■□□ 2.05
CLN3-258ENST00000637184 KIF3BO15066 747 aa27.83■■■□□ 2.05
CLN3-258ENST00000637184 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.83■■■□□ 2.05
CLN3-258ENST00000637184 DEPDC5O75140 1603 aa27.8■■■□□ 2.04
CLN3-258ENST00000637184 FAM135AQ9P2D6 1515 aa27.8■■■□□ 2.04
CLN3-258ENST00000637184 IQGAP3Q86VI3 1631 aa27.79■■■□□ 2.04
CLN3-258ENST00000637184 ATP10AO60312 1499 aa27.77■■■□□ 2.04
CLN3-258ENST00000637184 BCORL1Q5H9F3 1711 aa27.76■■■□□ 2.03
CLN3-258ENST00000637184 PKD2Q13563 968 aa27.76■■■□□ 2.03
CLN3-258ENST00000637184 FOXD1Q16676 465 aa27.75■■■□□ 2.03
CLN3-258ENST00000637184 KANK1Q14678 1352 aa27.74■■■□□ 2.03
CLN3-258ENST00000637184 RNF17Q9BXT8 1623 aaKnown RBP27.73■■■□□ 2.03
CLN3-258ENST00000637184 PRDM15P57071 1507 aaPredicted RBP27.73■■■□□ 2.03
CLN3-258ENST00000637184 ARHGEF40Q8TER5 1519 aa27.73■■■□□ 2.03
CLN3-258ENST00000637184 SIN3AQ96ST3 1273 aa27.71■■■□□ 2.03
CLN3-258ENST00000637184 MROH1Q8NDA8 1641 aa27.71■■■□□ 2.03
CLN3-258ENST00000637184 REREQ9P2R6 1566 aa27.71■■■□□ 2.03
CLN3-258ENST00000637184 NEUROD1Q13562 356 aa27.68■■■□□ 2.02
CLN3-258ENST00000637184 VWDEQ8N2E2 1590 aa27.68■■■□□ 2.02
CLN3-258ENST00000637184 ANKRD30BQ9BXX2 1392 aa27.68■■■□□ 2.02
CLN3-258ENST00000637184 GGT6Q6P531 493 aa27.67■■■□□ 2.02
CLN3-258ENST00000637184 AGLP35573 1532 aa27.64■■■□□ 2.01
CLN3-258ENST00000637184 TET3O43151 1660 aa27.62■■■□□ 2.01
CLN3-258ENST00000637184 LMTK2Q8IWU2 1503 aa27.58■■■□□ 2.01
CLN3-258ENST00000637184 CEP152O94986 1710 aa27.58■■■□□ 2.01
CLN3-258ENST00000637184 TIMELESSQ9UNS1 1208 aa27.58■■■□□ 2
CLN3-258ENST00000637184 E9PCH4 1651 aa27.57■■■□□ 2
CLN3-258ENST00000637184 SIGLEC1Q9BZZ2 1709 aa27.57■■■□□ 2
CLN3-258ENST00000637184 WASHC2CQ9Y4E1 1318 aa27.57■■■□□ 2
CLN3-258ENST00000637184 RPRD2Q5VT52 1461 aaKnown RBP27.53■■■□□ 2
CLN3-258ENST00000637184 ABCC3O15438 1527 aa27.53■■■□□ 2
CLN3-258ENST00000637184 EFCAB6Q5THR3 1501 aa27.53■■■□□ 2
CLN3-258ENST00000637184 TONSLQ96HA7 1378 aa27.53■■■□□ 2
CLN3-258ENST00000637184 ZC3H13Q5T200 1668 aaKnown RBP27.52■■■□□ 2
CLN3-258ENST00000637184 PPP6R1Q9UPN7 881 aa27.49■■□□□ 1.99
CLN3-258ENST00000637184 ARID4BQ4LE39 1312 aaPredicted RBP27.48■■□□□ 1.99
CLN3-258ENST00000637184 PLA2R1Q13018 1463 aa27.48■■□□□ 1.99
CLN3-258ENST00000637184 CAMSAP1Q5T5Y3 1602 aa27.48■■□□□ 1.99
CLN3-258ENST00000637184 CCDC144AA2RUR9 1427 aa27.46■■□□□ 1.99
CLN3-258ENST00000637184 MLECQ14165 292 aa27.46■■□□□ 1.99
CLN3-258ENST00000637184 SPHKAPQ2M3C7 1700 aa27.46■■□□□ 1.99
CLN3-258ENST00000637184 PTPRTO14522 1441 aa27.44■■□□□ 1.98
CLN3-258ENST00000637184 NPATQ14207 1427 aa27.43■■□□□ 1.98
CLN3-258ENST00000637184 TRPM2O94759 1503 aa27.42■■□□□ 1.98
CLN3-258ENST00000637184 ARHGAP31Q2M1Z3 1444 aa27.4■■□□□ 1.98
CLN3-258ENST00000637184 CFAP65Q6ZU64 1925 aaKnown RBP27.39■■□□□ 1.98
CLN3-258ENST00000637184 CLTCQ00610 1675 aaKnown RBP27.38■■□□□ 1.97
CLN3-258ENST00000637184 PPP1R15AO75807 674 aaPredicted RBP27.37■■□□□ 1.97
CLN3-258ENST00000637184 L3MBTL2Q969R5 705 aa27.37■■□□□ 1.97
CLN3-258ENST00000637184 ESF1Q9H501 851 aaKnown RBP27.37■■□□□ 1.97
CLN3-258ENST00000637184 CNTLNQ9NXG0 1405 aa27.32■■□□□ 1.96
CLN3-258ENST00000637184 CLTCL1P53675 1640 aa27.32■■□□□ 1.96
CLN3-258ENST00000637184 NOS1P29475 1434 aa27.3■■□□□ 1.96
CLN3-258ENST00000637184 PREX1Q8TCU6 1659 aa27.27■■□□□ 1.96
CLN3-258ENST00000637184 UGGT1Q9NYU2 1555 aa27.26■■□□□ 1.95
CLN3-258ENST00000637184 RGL3Q3MIN7 710 aa27.25■■□□□ 1.95
CLN3-258ENST00000637184 ZMYM3Q14202 1370 aa27.24■■□□□ 1.95
CLN3-258ENST00000637184 KIF1BO60333 1816 aa27.24■■□□□ 1.95
CLN3-258ENST00000637184 SYNMO15061 1565 aa27.23■■□□□ 1.95
CLN3-258ENST00000637184 SPATA31E1Q6ZUB1 1445 aa27.23■■□□□ 1.95
CLN3-258ENST00000637184 MROH2AA6NES4 1674 aa27.22■■□□□ 1.95
CLN3-258ENST00000637184 ERVK-7P63135 1459 aa27.21■■□□□ 1.95
CLN3-258ENST00000637184 FER1L4A9Z1Z3 1794 aa27.21■■□□□ 1.95
CLN3-258ENST00000637184 FBXO31Q5XUX0 539 aaPredicted RBP27.21■■□□□ 1.95
CLN3-258ENST00000637184 DCAF11Q8TEB1 546 aa27.2■■□□□ 1.95
CLN3-258ENST00000637184 NEURL4Q96JN8 1562 aa27.2■■□□□ 1.94
CLN3-258ENST00000637184 PIK3C2BO00750 1634 aa27.19■■□□□ 1.94
CLN3-258ENST00000637184 SLC52A1Q9NWF4 448 aa27.18■■□□□ 1.94
CLN3-258ENST00000637184 SPATA31D1Q6ZQQ2 1576 aa27.17■■□□□ 1.94
CLN3-258ENST00000637184 KDM2AQ9Y2K7 1162 aa27.16■■□□□ 1.94
CLN3-258ENST00000637184 CHGAP10645 457 aaKnown RBP27.14■■□□□ 1.93
CLN3-258ENST00000637184 ADGRB3O60242 1522 aa27.13■■□□□ 1.93
CLN3-258ENST00000637184 IDI1Q13907 227 aa27.13■■□□□ 1.93
CLN3-258ENST00000637184 NBPF8Q3BBV2 869 aa27.13■■□□□ 1.93
CLN3-258ENST00000637184 ZNF326Q5BKZ1 582 aaKnown RBP27.12■■□□□ 1.93
CLN3-258ENST00000637184 UHRF1BP1Q6BDS2 1440 aa27.12■■□□□ 1.93
CLN3-258ENST00000637184 C3P01024 1663 aa27.09■■□□□ 1.93
CLN3-258ENST00000637184 STAC3Q96MF2 364 aa27.09■■□□□ 1.93
CLN3-258ENST00000637184 MADDQ8WXG6 1647 aa27.09■■□□□ 1.93
CLN3-258ENST00000637184 ADAMTSL3P82987 1691 aa27.07■■□□□ 1.92
CLN3-258ENST00000637184 CEBPAP49715 358 aaPredicted RBP27.05■■□□□ 1.92
CLN3-258ENST00000637184 TNRQ92752 1358 aa27.05■■□□□ 1.92
CLN3-258ENST00000637184 PRAG1Q86YV5 1406 aa27.04■■□□□ 1.92
CLN3-258ENST00000637184 RIMS1Q86UR5 1692 aaKnown RBP27.04■■□□□ 1.92
CLN3-258ENST00000637184 TMEM131LA2VDJ0 1609 aa27.03■■□□□ 1.92
CLN3-258ENST00000637184 IFT172Q9UG01 1749 aa27.03■■□□□ 1.92
CLN3-258ENST00000637184 ZNF316A6NFI3 1004 aaPredicted RBP27.02■■□□□ 1.92
CLN3-258ENST00000637184 RPGRIP1LQ68CZ1 1315 aa27.02■■□□□ 1.92
CLN3-258ENST00000637184 MYO5BQ9ULV0 1848 aa27.01■■□□□ 1.91
CLN3-258ENST00000637184 STAG3Q9UJ98 1225 aa27.01■■□□□ 1.91
CLN3-258ENST00000637184 PLPPR3Q6T4P5 718 aa26.99■■□□□ 1.91
CLN3-258ENST00000637184 MYOM2P54296 1465 aa26.99■■□□□ 1.91
CLN3-258ENST00000637184 RALGAPBQ86X10 1494 aa26.99■■□□□ 1.91
CLN3-258ENST00000637184 PPLO60437 1756 aa26.99■■□□□ 1.91
CLN3-258ENST00000637184 TRPM1Q7Z4N2 1603 aa26.96■■□□□ 1.91
CLN3-258ENST00000637184 NLRP1Q9C000 1473 aa26.94■■□□□ 1.9
CLN3-258ENST00000637184 NEXMIFQ5QGS0 1516 aa26.93■■□□□ 1.9
CLN3-258ENST00000637184 A2ML1A8K2U0 1454 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms