RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 ARID4BQ4LE39 1312 aaPredicted RBP20.22■□□□□ 0.83
CLN3-253ENST00000636977 FAM135AQ9P2D6 1515 aa20.22■□□□□ 0.83
CLN3-253ENST00000636977 ROCK2O75116 1388 aaKnown RBP20.22■□□□□ 0.83
CLN3-253ENST00000636977 NBPF1Q3BBV0 1214 aa20.22■□□□□ 0.83
CLN3-253ENST00000636977 TMC1Q8TDI8 760 aa20.22■□□□□ 0.83
CLN3-253ENST00000636977 SYCP2Q9BX26 1530 aa20.2■□□□□ 0.82
CLN3-253ENST00000636977 SMG6Q86US8 1419 aaKnown RBP20.2■□□□□ 0.82
CLN3-253ENST00000636977 PREX2Q70Z35 1606 aa20.19■□□□□ 0.82
CLN3-253ENST00000636977 NUDCQ9Y266 331 aa20.18■□□□□ 0.82
CLN3-253ENST00000636977 TTC37Q6PGP7 1564 aa20.18■□□□□ 0.82
CLN3-253ENST00000636977 PLA2R1Q13018 1463 aa20.16■□□□□ 0.82
CLN3-253ENST00000636977 ERCC6L2Q5T890 1561 aa20.16■□□□□ 0.82
CLN3-253ENST00000636977 ARHGAP5Q13017 1502 aa20.15■□□□□ 0.82
CLN3-253ENST00000636977 ANO8Q9HCE9 1232 aaPredicted RBP20.15■□□□□ 0.82
CLN3-253ENST00000636977 CCDC144AA2RUR9 1427 aa20.15■□□□□ 0.82
CLN3-253ENST00000636977 CHD1O14646 1710 aa20.14■□□□□ 0.81
CLN3-253ENST00000636977 PRAG1Q86YV5 1406 aa20.14■□□□□ 0.81
CLN3-253ENST00000636977 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.13■□□□□ 0.81
CLN3-253ENST00000636977 SALL2Q9Y467 1007 aaPredicted RBP20.13■□□□□ 0.81
CLN3-253ENST00000636977 PLEKHH2Q8IVE3 1493 aa20.12■□□□□ 0.81
CLN3-253ENST00000636977 FANCIQ9NVI1 1328 aa20.12■□□□□ 0.81
CLN3-253ENST00000636977 RSPH4AQ5TD94 716 aa20.11■□□□□ 0.81
CLN3-253ENST00000636977 MYBBP1AQ9BQG0 1328 aaKnown RBP20.11■□□□□ 0.81
CLN3-253ENST00000636977 A2MP01023 1474 aa20.1■□□□□ 0.81
CLN3-253ENST00000636977 TRPM1Q7Z4N2 1603 aa20.1■□□□□ 0.81
CLN3-253ENST00000636977 RNF123Q5XPI4 1314 aa20.09■□□□□ 0.81
CLN3-253ENST00000636977 LRPPRCP42704 1394 aaKnown RBP20.09■□□□□ 0.81
CLN3-253ENST00000636977 E9PCH4 1651 aa20.08■□□□□ 0.8
CLN3-253ENST00000636977 RALBP1Q15311 655 aa20.07■□□□□ 0.8
CLN3-253ENST00000636977 BRD4O60885 1362 aaPredicted RBP20.06■□□□□ 0.8
CLN3-253ENST00000636977 DISP3Q9P2K9 1392 aa20.06■□□□□ 0.8
CLN3-253ENST00000636977 PER1O15534 1290 aaPredicted RBP20.05■□□□□ 0.8
CLN3-253ENST00000636977 UNC13BO14795 1591 aa20.05■□□□□ 0.8
CLN3-253ENST00000636977 CC2D1BQ5T0F9 858 aaKnown RBP20.04■□□□□ 0.8
CLN3-253ENST00000636977 TESK2Q96S53 571 aa20.04■□□□□ 0.8
CLN3-253ENST00000636977 CCDC136Q96JN2 1154 aa20.03■□□□□ 0.8
CLN3-253ENST00000636977 MAST1Q9Y2H9 1570 aa20.03■□□□□ 0.8
CLN3-253ENST00000636977 SHROOM2Q13796 1616 aa20.01■□□□□ 0.79
CLN3-253ENST00000636977 PARD3Q8TEW0 1356 aa20.01■□□□□ 0.79
CLN3-253ENST00000636977 KTN1Q86UP2 1357 aaKnown RBP20.01■□□□□ 0.79
CLN3-253ENST00000636977 ABCC2Q92887 1545 aa20■□□□□ 0.79
CLN3-253ENST00000636977 GPRASP1Q5JY77 1395 aa20■□□□□ 0.79
CLN3-253ENST00000636977 MYO5CQ9NQX4 1742 aa20■□□□□ 0.79
CLN3-253ENST00000636977 NLRP13Q86W25 1043 aa20■□□□□ 0.79
CLN3-253ENST00000636977 PANK3Q9H999 370 aa19.99■□□□□ 0.79
CLN3-253ENST00000636977 IQGAP3Q86VI3 1631 aa19.99■□□□□ 0.79
CLN3-253ENST00000636977 PLXNC1O60486 1568 aa19.97■□□□□ 0.79
CLN3-253ENST00000636977 COL17A1Q9UMD9 1497 aaPredicted RBP19.97■□□□□ 0.79
CLN3-253ENST00000636977 CDCA7LQ96GN5 454 aa19.97■□□□□ 0.79
CLN3-253ENST00000636977 TRAPPC8Q9Y2L5 1435 aa19.97■□□□□ 0.79
CLN3-253ENST00000636977 PRDM15P57071 1507 aaPredicted RBP19.96■□□□□ 0.79
CLN3-253ENST00000636977 DUOX2Q9NRD8 1548 aa19.95■□□□□ 0.78
CLN3-253ENST00000636977 ERBINQ96RT1 1412 aa19.95■□□□□ 0.78
CLN3-253ENST00000636977 PLCH2O75038 1416 aa19.94■□□□□ 0.78
CLN3-253ENST00000636977 AFAP1Q8N556 730 aa19.94■□□□□ 0.78
CLN3-253ENST00000636977 EFCAB2Q5VUJ9 269 aa19.93■□□□□ 0.78
CLN3-253ENST00000636977 EXOC6Q8TAG9 804 aa19.93■□□□□ 0.78
CLN3-253ENST00000636977 RRP1P56182 461 aaKnown RBP19.92■□□□□ 0.78
CLN3-253ENST00000636977 RCAN3Q9UKA8 241 aa19.92■□□□□ 0.78
CLN3-253ENST00000636977 MAGI2Q86UL8 1455 aa19.91■□□□□ 0.78
CLN3-253ENST00000636977 ZCCHC11Q5TAX3 1644 aaKnown RBP19.91■□□□□ 0.78
CLN3-253ENST00000636977 TMF1P82094 1093 aa19.9■□□□□ 0.78
CLN3-253ENST00000636977 ATP10AO60312 1499 aa19.89■□□□□ 0.77
CLN3-253ENST00000636977 LAMC1P11047 1609 aa19.88■□□□□ 0.77
CLN3-253ENST00000636977 ABCC1P33527 1531 aa19.87■□□□□ 0.77
CLN3-253ENST00000636977 PLIN1O60240 522 aa19.86■□□□□ 0.77
CLN3-253ENST00000636977 SPAG9O60271 1321 aaKnown RBP19.86■□□□□ 0.77
CLN3-253ENST00000636977 EIF2AK4Q9P2K8 1649 aaKnown RBP19.85■□□□□ 0.77
CLN3-253ENST00000636977 PAK3O75914 559 aaPredicted RBP19.85■□□□□ 0.77
CLN3-253ENST00000636977 DEKP35659 375 aaKnown RBP19.85■□□□□ 0.77
CLN3-253ENST00000636977 ADAMTS8Q9UP79 889 aa19.82■□□□□ 0.76
CLN3-253ENST00000636977 WASHC2CQ9Y4E1 1318 aa19.82■□□□□ 0.76
CLN3-253ENST00000636977 RNF17Q9BXT8 1623 aaKnown RBP19.82■□□□□ 0.76
CLN3-253ENST00000636977 WDR7Q9Y4E6 1490 aa19.81■□□□□ 0.76
CLN3-253ENST00000636977 PDE3BQ13370 1112 aa19.8■□□□□ 0.76
CLN3-253ENST00000636977 MADDQ8WXG6 1647 aa19.8■□□□□ 0.76
CLN3-253ENST00000636977 BLMP54132 1417 aaPredicted RBP19.8■□□□□ 0.76
CLN3-253ENST00000636977 CLASP1Q7Z460 1538 aa19.78■□□□□ 0.76
CLN3-253ENST00000636977 SKAP1Q86WV1 359 aa19.78■□□□□ 0.76
CLN3-253ENST00000636977 NOP58Q9Y2X3 529 aaKnown RBP19.77■□□□□ 0.76
CLN3-253ENST00000636977 ZFYVE16Q7Z3T8 1539 aa19.77■□□□□ 0.76
CLN3-253ENST00000636977 PPP2R1AP30153 589 aa19.77■□□□□ 0.76
CLN3-253ENST00000636977 MYT1LQ9UL68 1186 aa19.77■□□□□ 0.76
CLN3-253ENST00000636977 CLTCL1P53675 1640 aa19.77■□□□□ 0.76
CLN3-253ENST00000636977 UHRF1BP1LA0JNW5 1464 aa19.77■□□□□ 0.76
CLN3-253ENST00000636977 KNSTRNQ9Y448 316 aa19.77■□□□□ 0.75
CLN3-253ENST00000636977 AMER1Q5JTC6 1135 aaPredicted RBP19.76■□□□□ 0.75
CLN3-253ENST00000636977 KIF3BO15066 747 aa19.75■□□□□ 0.75
CLN3-253ENST00000636977 TRPM2O94759 1503 aa19.75■□□□□ 0.75
CLN3-253ENST00000636977 IQGAP1P46940 1657 aa19.74■□□□□ 0.75
CLN3-253ENST00000636977 C20orf194Q5TEA3 1177 aa19.74■□□□□ 0.75
CLN3-253ENST00000636977 PTPRTO14522 1441 aa19.73■□□□□ 0.75
CLN3-253ENST00000636977 CRBNQ96SW2 442 aa19.73■□□□□ 0.75
CLN3-253ENST00000636977 SPHKAPQ2M3C7 1700 aa19.72■□□□□ 0.75
CLN3-253ENST00000636977 UGGT1Q9NYU2 1555 aa19.72■□□□□ 0.75
CLN3-253ENST00000636977 PLEKHH1Q9ULM0 1364 aa19.72■□□□□ 0.75
CLN3-253ENST00000636977 RTEL1-TNFRSF6BF6WH68 1400 aa19.71■□□□□ 0.75
CLN3-253ENST00000636977 SCAF11Q99590 1463 aaKnown RBP19.71■□□□□ 0.75
CLN3-253ENST00000636977 NBR1Q14596 966 aa19.71■□□□□ 0.75
CLN3-253ENST00000636977 CFAP70Q5T0N1 1121 aa19.71■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 117.5 ms