RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CLTCQ00610 1675 aaKnown RBP31.63■■■□□ 2.65
CLN3-240ENST00000631023 CEBPAP49715 358 aaPredicted RBP31.62■■■□□ 2.65
CLN3-240ENST00000631023 ADGRL2O95490 1459 aa31.61■■■□□ 2.65
CLN3-240ENST00000631023 RRBP1Q9P2E9 1410 aaKnown RBP31.6■■■□□ 2.65
CLN3-240ENST00000631023 ERBINQ96RT1 1412 aa31.59■■■□□ 2.65
CLN3-240ENST00000631023 RNF17Q9BXT8 1623 aaKnown RBP31.57■■■□□ 2.65
CLN3-240ENST00000631023 FAM135AQ9P2D6 1515 aa31.57■■■□□ 2.64
CLN3-240ENST00000631023 ZMYM3Q14202 1370 aa31.56■■■□□ 2.64
CLN3-240ENST00000631023 ITGAEP38570 1179 aa31.56■■■□□ 2.64
CLN3-240ENST00000631023 WASHC2CQ9Y4E1 1318 aa31.54■■■□□ 2.64
CLN3-240ENST00000631023 PTPRKQ15262 1439 aa31.54■■■□□ 2.64
CLN3-240ENST00000631023 KDM5DQ9BY66 1539 aa31.52■■■□□ 2.64
CLN3-240ENST00000631023 ROCK1Q13464 1354 aa31.5■■■□□ 2.63
CLN3-240ENST00000631023 PREX1Q8TCU6 1659 aa31.48■■■□□ 2.63
CLN3-240ENST00000631023 ZC3H13Q5T200 1668 aaKnown RBP31.46■■■□□ 2.63
CLN3-240ENST00000631023 NPATQ14207 1427 aa31.45■■■□□ 2.63
CLN3-240ENST00000631023 ANKRD50Q9ULJ7 1429 aa31.45■■■□□ 2.63
CLN3-240ENST00000631023 MROH1Q8NDA8 1641 aa31.45■■■□□ 2.62
CLN3-240ENST00000631023 DEPDC5O75140 1603 aa31.43■■■□□ 2.62
CLN3-240ENST00000631023 LMTK3Q96Q04 1460 aa31.43■■■□□ 2.62
CLN3-240ENST00000631023 PRDM15P57071 1507 aaPredicted RBP31.41■■■□□ 2.62
CLN3-240ENST00000631023 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.41■■■□□ 2.62
CLN3-240ENST00000631023 KANK1Q14678 1352 aa31.41■■■□□ 2.62
CLN3-240ENST00000631023 ABCC3O15438 1527 aa31.4■■■□□ 2.62
CLN3-240ENST00000631023 CEP152O94986 1710 aa31.4■■■□□ 2.62
CLN3-240ENST00000631023 UHRF1BP1Q6BDS2 1440 aa31.39■■■□□ 2.62
CLN3-240ENST00000631023 CFAP65Q6ZU64 1925 aaKnown RBP31.37■■■□□ 2.61
CLN3-240ENST00000631023 PZPP20742 1482 aa31.36■■■□□ 2.61
CLN3-240ENST00000631023 CAMSAP1Q5T5Y3 1602 aa31.33■■■□□ 2.61
CLN3-240ENST00000631023 HSPA2P54652 639 aa31.29■■■□□ 2.6
CLN3-240ENST00000631023 FBXO31Q5XUX0 539 aaPredicted RBP31.29■■■□□ 2.6
CLN3-240ENST00000631023 VWDEQ8N2E2 1590 aa31.28■■■□□ 2.6
CLN3-240ENST00000631023 MYO3AQ8NEV4 1616 aa31.26■■■□□ 2.59
CLN3-240ENST00000631023 TNRQ92752 1358 aa31.25■■■□□ 2.59
CLN3-240ENST00000631023 UNC13BO14795 1591 aa31.25■■■□□ 2.59
CLN3-240ENST00000631023 LMTK2Q8IWU2 1503 aa31.24■■■□□ 2.59
CLN3-240ENST00000631023 ARHGAP31Q2M1Z3 1444 aa31.24■■■□□ 2.59
CLN3-240ENST00000631023 GCC2Q8IWJ2 1684 aa31.22■■■□□ 2.59
CLN3-240ENST00000631023 ZNF142P52746 1687 aaPredicted RBP31.21■■■□□ 2.59
CLN3-240ENST00000631023 SPATA31D1Q6ZQQ2 1576 aa31.19■■■□□ 2.58
CLN3-240ENST00000631023 NAIPQ13075 1403 aa31.19■■■□□ 2.58
CLN3-240ENST00000631023 CEP170BQ9Y4F5 1589 aaPredicted RBP31.19■■■□□ 2.58
CLN3-240ENST00000631023 ERVK-7P63135 1459 aa31.18■■■□□ 2.58
CLN3-240ENST00000631023 HFM1A2PYH4 1435 aa31.17■■■□□ 2.58
CLN3-240ENST00000631023 TET3O43151 1660 aa31.16■■■□□ 2.58
CLN3-240ENST00000631023 A2ML1A8K2U0 1454 aa31.15■■■□□ 2.58
CLN3-240ENST00000631023 EFCAB6Q5THR3 1501 aa31.15■■■□□ 2.58
CLN3-240ENST00000631023 NUP155O75694 1391 aa31.14■■■□□ 2.58
CLN3-240ENST00000631023 NLRP1Q9C000 1473 aa31.14■■■□□ 2.58
CLN3-240ENST00000631023 IQGAP3Q86VI3 1631 aa31.14■■■□□ 2.57
CLN3-240ENST00000631023 RPRD2Q5VT52 1461 aaKnown RBP31.09■■■□□ 2.57
CLN3-240ENST00000631023 STRCQ7RTU9 1775 aa31.09■■■□□ 2.57
CLN3-240ENST00000631023 DMRT2Q9Y5R5 561 aa31.05■■■□□ 2.56
CLN3-240ENST00000631023 THEMISQ8N1K5 641 aaPredicted RBP31.04■■■□□ 2.56
CLN3-240ENST00000631023 UGGT1Q9NYU2 1555 aa31.04■■■□□ 2.56
CLN3-240ENST00000631023 E9PCH4 1651 aa31.03■■■□□ 2.56
CLN3-240ENST00000631023 PLA2R1Q13018 1463 aa31.02■■■□□ 2.56
CLN3-240ENST00000631023 NOS1P29475 1434 aa31.01■■■□□ 2.55
CLN3-240ENST00000631023 TRIM52Q96A61 297 aa31■■■□□ 2.55
CLN3-240ENST00000631023 PKD2Q13563 968 aa30.97■■■□□ 2.55
CLN3-240ENST00000631023 SYNMO15061 1565 aa30.96■■■□□ 2.55
CLN3-240ENST00000631023 SLC52A1Q9NWF4 448 aa30.96■■■□□ 2.55
CLN3-240ENST00000631023 UBR1Q8IWV7 1749 aa30.96■■■□□ 2.55
CLN3-240ENST00000631023 NCKAP5LQ9HCH0 1330 aa30.93■■■□□ 2.54
CLN3-240ENST00000631023 ACIN1Q9UKV3 1341 aaKnown RBP30.93■■■□□ 2.54
CLN3-240ENST00000631023 PIK3C2BO00750 1634 aa30.93■■■□□ 2.54
CLN3-240ENST00000631023 IDI1Q13907 227 aa30.93■■■□□ 2.54
CLN3-240ENST00000631023 STAG3Q9UJ98 1225 aa30.93■■■□□ 2.54
CLN3-240ENST00000631023 SETD5Q9C0A6 1442 aa30.92■■■□□ 2.54
CLN3-240ENST00000631023 POLR1AO95602 1720 aaPredicted RBP30.92■■■□□ 2.54
CLN3-240ENST00000631023 PTPRTO14522 1441 aa30.91■■■□□ 2.54
CLN3-240ENST00000631023 KDM5AP29375 1690 aaKnown RBP30.91■■■□□ 2.54
CLN3-240ENST00000631023 ANKLE2Q86XL3 938 aa30.91■■■□□ 2.54
CLN3-240ENST00000631023 SLC4A1APQ9BWU0 796 aaKnown RBP30.87■■■□□ 2.53
CLN3-240ENST00000631023 SPHKAPQ2M3C7 1700 aa30.86■■■□□ 2.53
CLN3-240ENST00000631023 ADGRB3O60242 1522 aa30.81■■■□□ 2.52
CLN3-240ENST00000631023 MYO5BQ9ULV0 1848 aa30.81■■■□□ 2.52
CLN3-240ENST00000631023 SLIT1O75093 1534 aa30.8■■■□□ 2.52
CLN3-240ENST00000631023 RAB3GAP2Q9H2M9 1393 aa30.79■■■□□ 2.52
CLN3-240ENST00000631023 EID1Q9Y6B2 187 aa30.78■■■□□ 2.52
CLN3-240ENST00000631023 ARHGAP23Q9P227 1491 aa30.78■■■□□ 2.52
CLN3-240ENST00000631023 NEURL4Q96JN8 1562 aa30.77■■■□□ 2.52
CLN3-240ENST00000631023 TMEM2Q9UHN6 1383 aa30.77■■■□□ 2.52
CLN3-240ENST00000631023 TXNDC2Q86VQ3 553 aa30.76■■■□□ 2.52
CLN3-240ENST00000631023 TMEM131LA2VDJ0 1609 aa30.75■■■□□ 2.51
CLN3-240ENST00000631023 MED14O60244 1454 aa30.75■■■□□ 2.51
CLN3-240ENST00000631023 MPHOSPH9Q99550 1183 aa30.75■■■□□ 2.51
CLN3-240ENST00000631023 CHGAP10645 457 aaKnown RBP30.75■■■□□ 2.51
CLN3-240ENST00000631023 SCAF11Q99590 1463 aaKnown RBP30.74■■■□□ 2.51
CLN3-240ENST00000631023 NPHP4O75161 1426 aaPredicted RBP30.73■■■□□ 2.51
CLN3-240ENST00000631023 IQGAP1P46940 1657 aa30.72■■■□□ 2.51
CLN3-240ENST00000631023 TRPM2O94759 1503 aa30.71■■■□□ 2.51
CLN3-240ENST00000631023 HRCP23327 699 aa30.71■■■□□ 2.51
CLN3-240ENST00000631023 LTKP29376 864 aa30.71■■■□□ 2.51
CLN3-240ENST00000631023 HDGFP51858 240 aaKnown RBP30.7■■■□□ 2.5
CLN3-240ENST00000631023 KIF1BO60333 1816 aa30.68■■■□□ 2.5
CLN3-240ENST00000631023 CLTCL1P53675 1640 aa30.65■■■□□ 2.5
CLN3-240ENST00000631023 FOXD1Q16676 465 aa30.64■■■□□ 2.5
CLN3-240ENST00000631023 RIMS2Q9UQ26 1411 aa30.62■■■□□ 2.49
CLN3-240ENST00000631023 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.62■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms