RNA–Protein interactions for RNA: ENST00000622702.1

PDLIM2-221, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5 BASIC

Gene PDLIM2, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-221ENST00000622702 PCGF6Q9BYE7 350 aa29.8■■■□□ 2.36
PDLIM2-221ENST00000622702 ESF1Q9H501 851 aaKnown RBP29.79■■■□□ 2.36
PDLIM2-221ENST00000622702 PLPPR3Q6T4P5 718 aa29.76■■■□□ 2.35
PDLIM2-221ENST00000622702 GCC2Q8IWJ2 1684 aa29.76■■■□□ 2.35
PDLIM2-221ENST00000622702 ERBINQ96RT1 1412 aa29.74■■■□□ 2.35
PDLIM2-221ENST00000622702 ANKRD50Q9ULJ7 1429 aa29.74■■■□□ 2.35
PDLIM2-221ENST00000622702 EIF2AK4Q9P2K8 1649 aaKnown RBP29.73■■■□□ 2.35
PDLIM2-221ENST00000622702 SETD5Q9C0A6 1442 aa29.71■■■□□ 2.35
PDLIM2-221ENST00000622702 CNTLNQ9NXG0 1405 aa29.71■■■□□ 2.35
PDLIM2-221ENST00000622702 PPP6R1Q9UPN7 881 aa29.69■■■□□ 2.34
PDLIM2-221ENST00000622702 CLTCQ00610 1675 aaKnown RBP29.69■■■□□ 2.34
PDLIM2-221ENST00000622702 CEBPAP49715 358 aaPredicted RBP29.68■■■□□ 2.34
PDLIM2-221ENST00000622702 RNF17Q9BXT8 1623 aaKnown RBP29.67■■■□□ 2.34
PDLIM2-221ENST00000622702 C3P01024 1663 aa29.66■■■□□ 2.34
PDLIM2-221ENST00000622702 MROH2AA6NES4 1674 aa29.65■■■□□ 2.34
PDLIM2-221ENST00000622702 RAB3GAP2Q9H2M9 1393 aa29.62■■■□□ 2.33
PDLIM2-221ENST00000622702 ZMYM3Q14202 1370 aa29.61■■■□□ 2.33
PDLIM2-221ENST00000622702 WASHC2CQ9Y4E1 1318 aa29.6■■■□□ 2.33
PDLIM2-221ENST00000622702 MROH1Q8NDA8 1641 aa29.6■■■□□ 2.33
PDLIM2-221ENST00000622702 HRCP23327 699 aa29.6■■■□□ 2.33
PDLIM2-221ENST00000622702 KDM5DQ9BY66 1539 aa29.59■■■□□ 2.33
PDLIM2-221ENST00000622702 FAM135AQ9P2D6 1515 aa29.58■■■□□ 2.33
PDLIM2-221ENST00000622702 ACIN1Q9UKV3 1341 aaKnown RBP29.56■■■□□ 2.32
PDLIM2-221ENST00000622702 DEPDC5O75140 1603 aa29.55■■■□□ 2.32
PDLIM2-221ENST00000622702 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.55■■■□□ 2.32
PDLIM2-221ENST00000622702 PRDM15P57071 1507 aaPredicted RBP29.54■■■□□ 2.32
PDLIM2-221ENST00000622702 ZC3H13Q5T200 1668 aaKnown RBP29.52■■■□□ 2.32
PDLIM2-221ENST00000622702 UNC13BO14795 1591 aa29.52■■■□□ 2.32
PDLIM2-221ENST00000622702 ABCC3O15438 1527 aa29.52■■■□□ 2.32
PDLIM2-221ENST00000622702 CEP152O94986 1710 aa29.5■■■□□ 2.31
PDLIM2-221ENST00000622702 KANK1Q14678 1352 aa29.48■■■□□ 2.31
PDLIM2-221ENST00000622702 SETD1BQ9UPS6 1966 aaKnown RBP29.47■■■□□ 2.31
PDLIM2-221ENST00000622702 NPATQ14207 1427 aa29.47■■■□□ 2.31
PDLIM2-221ENST00000622702 PREX1Q8TCU6 1659 aa29.46■■■□□ 2.31
PDLIM2-221ENST00000622702 LMTK3Q96Q04 1460 aa29.45■■■□□ 2.3
PDLIM2-221ENST00000622702 NUP155O75694 1391 aa29.44■■■□□ 2.3
PDLIM2-221ENST00000622702 VWDEQ8N2E2 1590 aa29.44■■■□□ 2.3
PDLIM2-221ENST00000622702 CAMSAP1Q5T5Y3 1602 aa29.44■■■□□ 2.3
PDLIM2-221ENST00000622702 PZPP20742 1482 aa29.43■■■□□ 2.3
PDLIM2-221ENST00000622702 TRIM52Q96A61 297 aa29.42■■■□□ 2.3
PDLIM2-221ENST00000622702 FBXO31Q5XUX0 539 aaPredicted RBP29.42■■■□□ 2.3
PDLIM2-221ENST00000622702 UHRF1BP1Q6BDS2 1440 aa29.4■■■□□ 2.3
PDLIM2-221ENST00000622702 IQGAP3Q86VI3 1631 aa29.39■■■□□ 2.3
PDLIM2-221ENST00000622702 LMTK2Q8IWU2 1503 aa29.37■■■□□ 2.29
PDLIM2-221ENST00000622702 CFAP65Q6ZU64 1925 aaKnown RBP29.34■■■□□ 2.29
PDLIM2-221ENST00000622702 HSPA2P54652 639 aa29.34■■■□□ 2.29
PDLIM2-221ENST00000622702 ARHGAP31Q2M1Z3 1444 aa29.34■■■□□ 2.29
PDLIM2-221ENST00000622702 TNRQ92752 1358 aa29.33■■■□□ 2.29
PDLIM2-221ENST00000622702 MYO3AQ8NEV4 1616 aa29.33■■■□□ 2.29
PDLIM2-221ENST00000622702 MPHOSPH9Q99550 1183 aa29.3■■■□□ 2.28
PDLIM2-221ENST00000622702 SLC4A1APQ9BWU0 796 aaKnown RBP29.3■■■□□ 2.28
PDLIM2-221ENST00000622702 EFCAB6Q5THR3 1501 aa29.3■■■□□ 2.28
PDLIM2-221ENST00000622702 ERVK-7P63135 1459 aa29.3■■■□□ 2.28
PDLIM2-221ENST00000622702 TET3O43151 1660 aa29.29■■■□□ 2.28
PDLIM2-221ENST00000622702 SPATA31D1Q6ZQQ2 1576 aa29.28■■■□□ 2.28
PDLIM2-221ENST00000622702 CEP170BQ9Y4F5 1589 aaPredicted RBP29.25■■■□□ 2.27
PDLIM2-221ENST00000622702 ZNF142P52746 1687 aaPredicted RBP29.25■■■□□ 2.27
PDLIM2-221ENST00000622702 DHX57Q6P158 1386 aaKnown RBP29.24■■■□□ 2.27
PDLIM2-221ENST00000622702 PKD2Q13563 968 aa29.22■■■□□ 2.27
PDLIM2-221ENST00000622702 A2ML1A8K2U0 1454 aa29.21■■■□□ 2.27
PDLIM2-221ENST00000622702 RPRD2Q5VT52 1461 aaKnown RBP29.2■■■□□ 2.27
PDLIM2-221ENST00000622702 NLRP1Q9C000 1473 aa29.2■■■□□ 2.27
PDLIM2-221ENST00000622702 E9PCH4 1651 aa29.18■■■□□ 2.26
PDLIM2-221ENST00000622702 NOS1P29475 1434 aa29.15■■■□□ 2.26
PDLIM2-221ENST00000622702 SYNMO15061 1565 aa29.13■■■□□ 2.25
PDLIM2-221ENST00000622702 UGGT1Q9NYU2 1555 aa29.12■■■□□ 2.25
PDLIM2-221ENST00000622702 STRCQ7RTU9 1775 aa29.11■■■□□ 2.25
PDLIM2-221ENST00000622702 FOXD1Q16676 465 aa29.1■■■□□ 2.25
PDLIM2-221ENST00000622702 PTPRTO14522 1441 aa29.09■■■□□ 2.25
PDLIM2-221ENST00000622702 THEMISQ8N1K5 641 aaPredicted RBP29.08■■■□□ 2.25
PDLIM2-221ENST00000622702 IDI1Q13907 227 aa29.07■■■□□ 2.24
PDLIM2-221ENST00000622702 PIK3C2BO00750 1634 aa29.07■■■□□ 2.24
PDLIM2-221ENST00000622702 ANKRD30BQ9BXX2 1392 aa29.06■■■□□ 2.24
PDLIM2-221ENST00000622702 PLA2R1Q13018 1463 aa29.06■■■□□ 2.24
PDLIM2-221ENST00000622702 UBR1Q8IWV7 1749 aa29.06■■■□□ 2.24
PDLIM2-221ENST00000622702 SLC52A1Q9NWF4 448 aa29.04■■■□□ 2.24
PDLIM2-221ENST00000622702 SPHKAPQ2M3C7 1700 aa29.04■■■□□ 2.24
PDLIM2-221ENST00000622702 CCER1Q8TC90 406 aaPredicted RBP29.03■■■□□ 2.24
PDLIM2-221ENST00000622702 TRPM2O94759 1503 aa29.02■■■□□ 2.24
PDLIM2-221ENST00000622702 CLSPNQ9HAW4 1339 aa29.02■■■□□ 2.24
PDLIM2-221ENST00000622702 NCKAP5LQ9HCH0 1330 aa29.02■■■□□ 2.24
PDLIM2-221ENST00000622702 STAG3Q9UJ98 1225 aa29.02■■■□□ 2.24
PDLIM2-221ENST00000622702 DMRT2Q9Y5R5 561 aa28.99■■■□□ 2.23
PDLIM2-221ENST00000622702 KDM5AP29375 1690 aaKnown RBP28.97■■■□□ 2.23
PDLIM2-221ENST00000622702 ANKLE2Q86XL3 938 aa28.96■■■□□ 2.23
PDLIM2-221ENST00000622702 POLR1AO95602 1720 aaPredicted RBP28.96■■■□□ 2.23
PDLIM2-221ENST00000622702 ADGRB3O60242 1522 aa28.95■■■□□ 2.23
PDLIM2-221ENST00000622702 CCDC144AA2RUR9 1427 aa28.94■■■□□ 2.22
PDLIM2-221ENST00000622702 CLTCL1P53675 1640 aa28.91■■■□□ 2.22
PDLIM2-221ENST00000622702 CHGAP10645 457 aaKnown RBP28.91■■■□□ 2.22
PDLIM2-221ENST00000622702 SLIT1O75093 1534 aa28.9■■■□□ 2.22
PDLIM2-221ENST00000622702 TMEM131LA2VDJ0 1609 aa28.9■■■□□ 2.22
PDLIM2-221ENST00000622702 MYO5BQ9ULV0 1848 aa28.9■■■□□ 2.22
PDLIM2-221ENST00000622702 ARHGAP23Q9P227 1491 aa28.89■■■□□ 2.22
PDLIM2-221ENST00000622702 TMEM2Q9UHN6 1383 aa28.89■■■□□ 2.21
PDLIM2-221ENST00000622702 NEURL4Q96JN8 1562 aa28.89■■■□□ 2.21
PDLIM2-221ENST00000622702 LTKP29376 864 aa28.85■■■□□ 2.21
PDLIM2-221ENST00000622702 TXNDC2Q86VQ3 553 aa28.85■■■□□ 2.21
PDLIM2-221ENST00000622702 SIN3AQ96ST3 1273 aa28.85■■■□□ 2.21
PDLIM2-221ENST00000622702 EID1Q9Y6B2 187 aa28.85■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms