RNA–Protein interactions for RNA: ENST00000616352.4

ACACA-238, Transcript of acetyl-CoA carboxylase alpha, human

TSL 1 (best)

Gene ACACA, Length 1,626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ACACA-238	ENST00000616352	MROH1	Q8NDA8	1641 aa		34.34	■■■■□ 3.09
ACACA-238	ENST00000616352	KIF3B	O15066	747 aa		34.3	■■■■□ 3.08
ACACA-238	ENST00000616352	PRDM15	P57071	1507 aa	Predicted RBP	34.3	■■■■□ 3.08
ACACA-238	ENST00000616352	KDM5D	Q9BY66	1539 aa		34.26	■■■■□ 3.08
ACACA-238	ENST00000616352	ACIN1	Q9UKV3	1341 aa	Known RBP	34.25	■■■■□ 3.07
ACACA-238	ENST00000616352	VWDE	Q8N2E2	1590 aa		34.24	■■■■□ 3.07
ACACA-238	ENST00000616352	IQGAP3	Q86VI3	1631 aa		34.24	■■■■□ 3.07
ACACA-238	ENST00000616352	CEP152	O94986	1710 aa		34.18	■■■■□ 3.06
ACACA-238	ENST00000616352	NUP155	O75694	1391 aa		34.17	■■■■□ 3.06
ACACA-238	ENST00000616352	ZC3H13	Q5T200	1668 aa	Known RBP	34.16	■■■■□ 3.06
ACACA-238	ENST00000616352	PZP	P20742	1482 aa		34.16	■■■■□ 3.06
ACACA-238	ENST00000616352	FAM135A	Q9P2D6	1515 aa		34.16	■■■■□ 3.06
ACACA-238	ENST00000616352	ARID4B	Q4LE39	1312 aa	Predicted RBP	34.16	■■■■□ 3.06
ACACA-238	ENST00000616352	GGT6	Q6P531	493 aa		34.15	■■■■□ 3.06
ACACA-238	ENST00000616352	TRIM52	Q96A61	297 aa		34.15	■■■■□ 3.06
ACACA-238	ENST00000616352	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	34.15	■■■■□ 3.06	8e-12	■■□□□ 12.6
ACACA-238	ENST00000616352	ABCC3	O15438	1527 aa		34.11	■■■■□ 3.05
ACACA-238	ENST00000616352	TET3	O43151	1660 aa		34.11	■■■■□ 3.05
ACACA-238	ENST00000616352	KANK1	Q14678	1352 aa		34.11	■■■■□ 3.05
ACACA-238	ENST00000616352	LMTK2	Q8IWU2	1503 aa		34.1	■■■■□ 3.05
ACACA-238	ENST00000616352	CLTC	Q00610	1675 aa	Known RBP	34.08	■■■■□ 3.05
ACACA-238	ENST00000616352	PPP6R1	Q9UPN7	881 aa		34.08	■■■■□ 3.05
ACACA-238	ENST00000616352	FER1L4	A9Z1Z3	1794 aa		34.08	■■■■□ 3.05
ACACA-238	ENST00000616352	MLEC	Q14165	292 aa		34.07	■■■■□ 3.04
ACACA-238	ENST00000616352	CAMSAP1	Q5T5Y3	1602 aa		34.06	■■■■□ 3.04
ACACA-238	ENST00000616352	ADAMTSL3	P82987	1691 aa		34.04	■■■■□ 3.04
ACACA-238	ENST00000616352	DHX57	Q6P158	1386 aa	Known RBP	34.03	■■■■□ 3.04
ACACA-238	ENST00000616352	EFCAB6	Q5THR3	1501 aa		34.03	■■■■□ 3.04
ACACA-238	ENST00000616352		E9PCH4	1651 aa		34.03	■■■■□ 3.04
ACACA-238	ENST00000616352	MPHOSPH9	Q99550	1183 aa		34.02	■■■■□ 3.04
ACACA-238	ENST00000616352	WASHC2C	Q9Y4E1	1318 aa		34.01	■■■■□ 3.04
ACACA-238	ENST00000616352	SLC4A1AP	Q9BWU0	796 aa	Known RBP	34.01	■■■■□ 3.03
ACACA-238	ENST00000616352	MROH2A	A6NES4	1674 aa		34	■■■■□ 3.03
ACACA-238	ENST00000616352	MADD	Q8WXG6	1647 aa		33.98	■■■■□ 3.03
ACACA-238	ENST00000616352	CFAP65	Q6ZU64	1925 aa	Known RBP	33.96	■■■■□ 3.03
ACACA-238	ENST00000616352	CNTLN	Q9NXG0	1405 aa		33.94	■■■■□ 3.02
ACACA-238	ENST00000616352	ARHGAP31	Q2M1Z3	1444 aa		33.91	■■■■□ 3.02
ACACA-238	ENST00000616352	RIMS1	Q86UR5	1692 aa	Known RBP	33.91	■■■■□ 3.02
ACACA-238	ENST00000616352	PKD2	Q13563	968 aa		33.91	■■■■□ 3.02
ACACA-238	ENST00000616352	RPRD2	Q5VT52	1461 aa	Known RBP	33.9	■■■■□ 3.02
ACACA-238	ENST00000616352	NPAT	Q14207	1427 aa		33.89	■■■■□ 3.02
ACACA-238	ENST00000616352	SPHKAP	Q2M3C7	1700 aa		33.88	■■■■□ 3.01
ACACA-238	ENST00000616352	C3	P01024	1663 aa		33.88	■■■■□ 3.01
ACACA-238	ENST00000616352	ESF1	Q9H501	851 aa	Known RBP	33.87	■■■■□ 3.01
ACACA-238	ENST00000616352	PREX1	Q8TCU6	1659 aa		33.85	■■■■□ 3.01
ACACA-238	ENST00000616352	FOXD1	Q16676	465 aa		33.84	■■■■□ 3.01
ACACA-238	ENST00000616352	ZMYM3	Q14202	1370 aa		33.83	■■■■□ 3.01
ACACA-238	ENST00000616352	PTPRT	O14522	1441 aa		33.78	■■■■□ 3
ACACA-238	ENST00000616352	PLA2R1	Q13018	1463 aa		33.78	■■■■□ 3
ACACA-238	ENST00000616352	ANKRD30B	Q9BXX2	1392 aa		33.77	■■■■□ 3
ACACA-238	ENST00000616352	CCER1	Q8TC90	406 aa	Predicted RBP	33.76	■■■■□ 3
ACACA-238	ENST00000616352	TRPM2	O94759	1503 aa		33.76	■■■□□ 2.99
ACACA-238	ENST00000616352	SPATA31D1	Q6ZQQ2	1576 aa		33.75	■■■□□ 2.99
ACACA-238	ENST00000616352	NOS1	P29475	1434 aa		33.75	■■■□□ 2.99
ACACA-238	ENST00000616352	ERVK-7	P63135	1459 aa		33.74	■■■□□ 2.99
ACACA-238	ENST00000616352	SYNM	O15061	1565 aa		33.73	■■■□□ 2.99
ACACA-238	ENST00000616352	CLSPN	Q9HAW4	1339 aa		33.72	■■■□□ 2.99
ACACA-238	ENST00000616352	FBXO31	Q5XUX0	539 aa	Predicted RBP	33.68	■■■□□ 2.98
ACACA-238	ENST00000616352	PTPRM	P28827	1452 aa		33.68	■■■□□ 2.98
ACACA-238	ENST00000616352	PIK3C2B	O00750	1634 aa		33.68	■■■□□ 2.98
ACACA-238	ENST00000616352	CLTCL1	P53675	1640 aa		33.67	■■■□□ 2.98
ACACA-238	ENST00000616352	KDM4F	A0A1W2PPD8	638 aa		33.67	■■■□□ 2.98
ACACA-238	ENST00000616352	CEBPA	P49715	358 aa	Predicted RBP	33.65	■■■□□ 2.98
ACACA-238	ENST00000616352	UGGT1	Q9NYU2	1555 aa		33.64	■■■□□ 2.98
ACACA-238	ENST00000616352	SETD1B	Q9UPS6	1966 aa	Known RBP	33.62	■■■□□ 2.97
ACACA-238	ENST00000616352	KIF1B	O60333	1816 aa		33.61	■■■□□ 2.97
ACACA-238	ENST00000616352	CCDC144A	A2RUR9	1427 aa		33.61	■■■□□ 2.97
ACACA-238	ENST00000616352	TNR	Q92752	1358 aa		33.56	■■■□□ 2.96
ACACA-238	ENST00000616352	SIN3A	Q96ST3	1273 aa		33.56	■■■□□ 2.96
ACACA-238	ENST00000616352	MYO3A	Q8NEV4	1616 aa		33.53	■■■□□ 2.96
ACACA-238	ENST00000616352	MYO5B	Q9ULV0	1848 aa		33.53	■■■□□ 2.96
ACACA-238	ENST00000616352	PLPPR3	Q6T4P5	718 aa		33.52	■■■□□ 2.96
ACACA-238	ENST00000616352	SLC52A1	Q9NWF4	448 aa		33.52	■■■□□ 2.96
ACACA-238	ENST00000616352	NEURL4	Q96JN8	1562 aa		33.49	■■■□□ 2.95
ACACA-238	ENST00000616352	KDM5A	P29375	1690 aa	Known RBP	33.49	■■■□□ 2.95
ACACA-238	ENST00000616352	NLRP1	Q9C000	1473 aa		33.48	■■■□□ 2.95
ACACA-238	ENST00000616352	IDI1	Q13907	227 aa		33.48	■■■□□ 2.95
ACACA-238	ENST00000616352	TMEM131L	A2VDJ0	1609 aa		33.48	■■■□□ 2.95
ACACA-238	ENST00000616352	ADGRB3	O60242	1522 aa		33.46	■■■□□ 2.95
ACACA-238	ENST00000616352	NEUROD1	Q13562	356 aa		33.46	■■■□□ 2.95
ACACA-238	ENST00000616352	ZNF142	P52746	1687 aa	Predicted RBP	33.45	■■■□□ 2.95
ACACA-238	ENST00000616352	SPATA31E1	Q6ZUB1	1445 aa		33.45	■■■□□ 2.95
ACACA-238	ENST00000616352	UBR1	Q8IWV7	1749 aa		33.44	■■■□□ 2.94
ACACA-238	ENST00000616352	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.39	■■■□□ 2.94
ACACA-238	ENST00000616352	A2ML1	A8K2U0	1454 aa		33.38	■■■□□ 2.93
ACACA-238	ENST00000616352	IFT172	Q9UG01	1749 aa		33.37	■■■□□ 2.93
ACACA-238	ENST00000616352	PPL	O60437	1756 aa		33.33	■■■□□ 2.93
ACACA-238	ENST00000616352	TONSL	Q96HA7	1378 aa		33.31	■■■□□ 2.92
ACACA-238	ENST00000616352	UHRF1BP1	Q6BDS2	1440 aa		33.3	■■■□□ 2.92
ACACA-238	ENST00000616352	CHGA	P10645	457 aa	Known RBP	33.3	■■■□□ 2.92
ACACA-238	ENST00000616352	TIMELESS	Q9UNS1	1208 aa		33.28	■■■□□ 2.92
ACACA-238	ENST00000616352	RGL3	Q3MIN7	710 aa		33.28	■■■□□ 2.92
ACACA-238	ENST00000616352	NEXMIF	Q5QGS0	1516 aa		33.27	■■■□□ 2.92
ACACA-238	ENST00000616352	L3MBTL2	Q969R5	705 aa		33.26	■■■□□ 2.91
ACACA-238	ENST00000616352	STAG3	Q9UJ98	1225 aa		33.26	■■■□□ 2.91
ACACA-238	ENST00000616352	SLIT1	O75093	1534 aa		33.21	■■■□□ 2.91
ACACA-238	ENST00000616352	ZNF326	Q5BKZ1	582 aa	Known RBP	33.2	■■■□□ 2.91
ACACA-238	ENST00000616352	RPGRIP1L	Q68CZ1	1315 aa		33.2	■■■□□ 2.9
ACACA-238	ENST00000616352	ZFYVE9	O95405	1425 aa		33.19	■■■□□ 2.9
ACACA-238	ENST00000616352	ARHGAP23	Q9P227	1491 aa		33.19	■■■□□ 2.9

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms