RNA–Protein interactions for RNA: ENST00000616010.4

CCND3-223, Transcript of cyclin D3, human

TSL 5 BASIC

Gene CCND3, Length 2,047 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CCND3-223	ENST00000616010	ZEB1	P37275	1124 aa	Predicted RBP	34.43	■■■■□ 3.1
CCND3-223	ENST00000616010	MPHOSPH9	Q99550	1183 aa		34.43	■■■■□ 3.1
CCND3-223	ENST00000616010	SLC4A1AP	Q9BWU0	796 aa	Known RBP	34.39	■■■■□ 3.1
CCND3-223	ENST00000616010	DEPDC5	O75140	1603 aa		34.39	■■■■□ 3.1
CCND3-223	ENST00000616010	FAM135A	Q9P2D6	1515 aa		34.36	■■■■□ 3.09
CCND3-223	ENST00000616010	IQGAP3	Q86VI3	1631 aa		34.35	■■■■□ 3.09
CCND3-223	ENST00000616010	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	34.35	■■■■□ 3.09
CCND3-223	ENST00000616010	KIF3B	O15066	747 aa		34.34	■■■■□ 3.09
CCND3-223	ENST00000616010	ARHGEF40	Q8TER5	1519 aa		34.32	■■■■□ 3.08
CCND3-223	ENST00000616010	BCORL1	Q5H9F3	1711 aa		34.31	■■■■□ 3.08
CCND3-223	ENST00000616010	MROH1	Q8NDA8	1641 aa		34.3	■■■■□ 3.08
CCND3-223	ENST00000616010	RNF17	Q9BXT8	1623 aa	Known RBP	34.3	■■■■□ 3.08
CCND3-223	ENST00000616010	PRDM15	P57071	1507 aa	Predicted RBP	34.3	■■■■□ 3.08
CCND3-223	ENST00000616010	ATP10A	O60312	1499 aa		34.29	■■■■□ 3.08
CCND3-223	ENST00000616010	FOXD1	Q16676	465 aa		34.28	■■■■□ 3.08
CCND3-223	ENST00000616010	RERE	Q9P2R6	1566 aa		34.25	■■■■□ 3.07
CCND3-223	ENST00000616010	PKD2	Q13563	968 aa		34.24	■■■■□ 3.07
CCND3-223	ENST00000616010	VWDE	Q8N2E2	1590 aa		34.22	■■■■□ 3.07
CCND3-223	ENST00000616010	KANK1	Q14678	1352 aa		34.21	■■■■□ 3.07
CCND3-223	ENST00000616010	SIN3A	Q96ST3	1273 aa		34.2	■■■■□ 3.07
CCND3-223	ENST00000616010	SIGLEC1	Q9BZZ2	1709 aa		34.16	■■■■□ 3.06
CCND3-223	ENST00000616010	ANKRD30B	Q9BXX2	1392 aa		34.16	■■■■□ 3.06
CCND3-223	ENST00000616010	NEUROD1	Q13562	356 aa		34.15	■■■■□ 3.06
CCND3-223	ENST00000616010	GGT6	Q6P531	493 aa		34.14	■■■■□ 3.06
CCND3-223	ENST00000616010	TET3	O43151	1660 aa		34.14	■■■■□ 3.06
CCND3-223	ENST00000616010	AGL	P35573	1532 aa		34.13	■■■■□ 3.05
CCND3-223	ENST00000616010	CEP152	O94986	1710 aa		34.13	■■■■□ 3.05
CCND3-223	ENST00000616010		E9PCH4	1651 aa		34.1	■■■■□ 3.05
CCND3-223	ENST00000616010	LMTK2	Q8IWU2	1503 aa		34.07	■■■■□ 3.05
CCND3-223	ENST00000616010	ABCC3	O15438	1527 aa		34.05	■■■■□ 3.04
CCND3-223	ENST00000616010	EFCAB6	Q5THR3	1501 aa		34.05	■■■■□ 3.04
CCND3-223	ENST00000616010	ZC3H13	Q5T200	1668 aa	Known RBP	34.03	■■■■□ 3.04
CCND3-223	ENST00000616010	RPRD2	Q5VT52	1461 aa	Known RBP	34.01	■■■■□ 3.03
CCND3-223	ENST00000616010	WASHC2C	Q9Y4E1	1318 aa		34	■■■■□ 3.03
CCND3-223	ENST00000616010	CAMSAP1	Q5T5Y3	1602 aa		33.99	■■■■□ 3.03
CCND3-223	ENST00000616010	TONSL	Q96HA7	1378 aa		33.97	■■■■□ 3.03
CCND3-223	ENST00000616010	PLA2R1	Q13018	1463 aa		33.96	■■■■□ 3.03
CCND3-223	ENST00000616010	SPHKAP	Q2M3C7	1700 aa		33.96	■■■■□ 3.03
CCND3-223	ENST00000616010	TIMELESS	Q9UNS1	1208 aa		33.92	■■■■□ 3.02
CCND3-223	ENST00000616010	ARID4B	Q4LE39	1312 aa	Predicted RBP	33.92	■■■■□ 3.02
CCND3-223	ENST00000616010	MLEC	Q14165	292 aa		33.91	■■■■□ 3.02
CCND3-223	ENST00000616010	CCDC144A	A2RUR9	1427 aa		33.91	■■■■□ 3.02
CCND3-223	ENST00000616010	NPAT	Q14207	1427 aa		33.9	■■■■□ 3.02
CCND3-223	ENST00000616010	TRPM2	O94759	1503 aa		33.9	■■■■□ 3.02
CCND3-223	ENST00000616010	PTPRT	O14522	1441 aa		33.87	■■■■□ 3.01
CCND3-223	ENST00000616010	CLTC	Q00610	1675 aa	Known RBP	33.87	■■■■□ 3.01
CCND3-223	ENST00000616010	PPP6R1	Q9UPN7	881 aa		33.85	■■■■□ 3.01
CCND3-223	ENST00000616010	ARHGAP31	Q2M1Z3	1444 aa		33.82	■■■■□ 3
CCND3-223	ENST00000616010	CFAP65	Q6ZU64	1925 aa	Known RBP	33.82	■■■■□ 3
CCND3-223	ENST00000616010	CLTCL1	P53675	1640 aa		33.8	■■■■□ 3
CCND3-223	ENST00000616010	L3MBTL2	Q969R5	705 aa		33.76	■■■■□ 3
CCND3-223	ENST00000616010	UGGT1	Q9NYU2	1555 aa		33.75	■■■□□ 2.99
CCND3-223	ENST00000616010	CNTLN	Q9NXG0	1405 aa		33.73	■■■□□ 2.99
CCND3-223	ENST00000616010	ESF1	Q9H501	851 aa	Known RBP	33.73	■■■□□ 2.99
CCND3-223	ENST00000616010	PREX1	Q8TCU6	1659 aa		33.73	■■■□□ 2.99
CCND3-223	ENST00000616010	PPP1R15A	O75807	674 aa	Predicted RBP	33.72	■■■□□ 2.99
CCND3-223	ENST00000616010	NOS1	P29475	1434 aa		33.72	■■■□□ 2.99
CCND3-223	ENST00000616010	SYNM	O15061	1565 aa		33.69	■■■□□ 2.98
CCND3-223	ENST00000616010	FER1L4	A9Z1Z3	1794 aa		33.67	■■■□□ 2.98
CCND3-223	ENST00000616010	ERVK-7	P63135	1459 aa		33.65	■■■□□ 2.98
CCND3-223	ENST00000616010	MROH2A	A6NES4	1674 aa		33.64	■■■□□ 2.98
CCND3-223	ENST00000616010	KIF1B	O60333	1816 aa		33.64	■■■□□ 2.98
CCND3-223	ENST00000616010	SPATA31E1	Q6ZUB1	1445 aa		33.64	■■■□□ 2.98
CCND3-223	ENST00000616010	PIK3C2B	O00750	1634 aa		33.63	■■■□□ 2.97
CCND3-223	ENST00000616010	ZMYM3	Q14202	1370 aa		33.62	■■■□□ 2.97
CCND3-223	ENST00000616010	RGL3	Q3MIN7	710 aa		33.61	■■■□□ 2.97
CCND3-223	ENST00000616010	FBXO31	Q5XUX0	539 aa	Predicted RBP	33.6	■■■□□ 2.97
CCND3-223	ENST00000616010	SPATA31D1	Q6ZQQ2	1576 aa		33.59	■■■□□ 2.97
CCND3-223	ENST00000616010	NEURL4	Q96JN8	1562 aa		33.57	■■■□□ 2.97
CCND3-223	ENST00000616010	ADGRB3	O60242	1522 aa		33.55	■■■□□ 2.96
CCND3-223	ENST00000616010	DCAF11	Q8TEB1	546 aa		33.55	■■■□□ 2.96
CCND3-223	ENST00000616010	MADD	Q8WXG6	1647 aa		33.53	■■■□□ 2.96
CCND3-223	ENST00000616010	C3	P01024	1663 aa		33.51	■■■□□ 2.96
CCND3-223	ENST00000616010	KDM2A	Q9Y2K7	1162 aa		33.5	■■■□□ 2.95
CCND3-223	ENST00000616010	SLC52A1	Q9NWF4	448 aa		33.5	■■■□□ 2.95
CCND3-223	ENST00000616010	NBPF8	Q3BBV2	869 aa		33.49	■■■□□ 2.95
CCND3-223	ENST00000616010	ZNF326	Q5BKZ1	582 aa	Known RBP	33.48	■■■□□ 2.95
CCND3-223	ENST00000616010	CHGA	P10645	457 aa	Known RBP	33.48	■■■□□ 2.95
CCND3-223	ENST00000616010	ADAMTSL3	P82987	1691 aa		33.48	■■■□□ 2.95
CCND3-223	ENST00000616010	RIMS1	Q86UR5	1692 aa	Known RBP	33.47	■■■□□ 2.95
CCND3-223	ENST00000616010	UHRF1BP1	Q6BDS2	1440 aa		33.47	■■■□□ 2.95
CCND3-223	ENST00000616010	IDI1	Q13907	227 aa		33.46	■■■□□ 2.95
CCND3-223	ENST00000616010	IFT172	Q9UG01	1749 aa		33.43	■■■□□ 2.94
CCND3-223	ENST00000616010	PRAG1	Q86YV5	1406 aa		33.41	■■■□□ 2.94
CCND3-223	ENST00000616010	TMEM131L	A2VDJ0	1609 aa		33.41	■■■□□ 2.94
CCND3-223	ENST00000616010	MYO5B	Q9ULV0	1848 aa		33.41	■■■□□ 2.94
CCND3-223	ENST00000616010	CEBPA	P49715	358 aa	Predicted RBP	33.41	■■■□□ 2.94
CCND3-223	ENST00000616010	TNR	Q92752	1358 aa		33.4	■■■□□ 2.94
CCND3-223	ENST00000616010	PLPPR3	Q6T4P5	718 aa		33.36	■■■□□ 2.93
CCND3-223	ENST00000616010	PPL	O60437	1756 aa		33.36	■■■□□ 2.93
CCND3-223	ENST00000616010	RALGAPB	Q86X10	1494 aa		33.35	■■■□□ 2.93
CCND3-223	ENST00000616010	MYOM2	P54296	1465 aa		33.35	■■■□□ 2.93
CCND3-223	ENST00000616010	TRPM1	Q7Z4N2	1603 aa		33.34	■■■□□ 2.93
CCND3-223	ENST00000616010	NEXMIF	Q5QGS0	1516 aa		33.31	■■■□□ 2.92
CCND3-223	ENST00000616010	STAC3	Q96MF2	364 aa		33.31	■■■□□ 2.92
CCND3-223	ENST00000616010	STAG3	Q9UJ98	1225 aa		33.3	■■■□□ 2.92
CCND3-223	ENST00000616010	ZNF316	A6NFI3	1004 aa	Predicted RBP	33.29	■■■□□ 2.92
CCND3-223	ENST00000616010	RPGRIP1L	Q68CZ1	1315 aa		33.29	■■■□□ 2.92
CCND3-223	ENST00000616010	A2ML1	A8K2U0	1454 aa		33.27	■■■□□ 2.92
CCND3-223	ENST00000616010	NLRP1	Q9C000	1473 aa		33.26	■■■□□ 2.91

Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms