RNA–Protein interactions for RNA: ENST00000602088.7

SSBP4-213, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 622 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-213ENST00000602088 ANKRD30AQ9BXX3 1397 aa25.69■■□□□ 1.7
SSBP4-213ENST00000602088 SETD1BQ9UPS6 1966 aaKnown RBP25.69■■□□□ 1.7
SSBP4-213ENST00000602088 NCOA1Q15788 1441 aa25.69■■□□□ 1.7
SSBP4-213ENST00000602088 ADGRL2O95490 1459 aa25.67■■□□□ 1.7
SSBP4-213ENST00000602088 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.67■■□□□ 1.79e-7■■■■□ 21.5
SSBP4-213ENST00000602088 RNF17Q9BXT8 1623 aaKnown RBP25.66■■□□□ 1.7
SSBP4-213ENST00000602088 FAM135AQ9P2D6 1515 aa25.66■■□□□ 1.7
SSBP4-213ENST00000602088 WASHC2CQ9Y4E1 1318 aa25.65■■□□□ 1.7
SSBP4-213ENST00000602088 PREX1Q8TCU6 1659 aa25.65■■□□□ 1.7
SSBP4-213ENST00000602088 ERBINQ96RT1 1412 aa25.65■■□□□ 1.7
SSBP4-213ENST00000602088 PTPRKQ15262 1439 aa25.64■■□□□ 1.7
SSBP4-213ENST00000602088 KDM5DQ9BY66 1539 aa25.64■■□□□ 1.7
SSBP4-213ENST00000602088 NPATQ14207 1427 aa25.63■■□□□ 1.69
SSBP4-213ENST00000602088 UHRF1BP1Q6BDS2 1440 aa25.61■■□□□ 1.69
SSBP4-213ENST00000602088 MROH1Q8NDA8 1641 aa25.6■■□□□ 1.69
SSBP4-213ENST00000602088 HSPA2P54652 639 aa25.6■■□□□ 1.69
SSBP4-213ENST00000602088 RRBP1Q9P2E9 1410 aaKnown RBP25.6■■□□□ 1.69
SSBP4-213ENST00000602088 ABCC3O15438 1527 aa25.55■■□□□ 1.68
SSBP4-213ENST00000602088 ITGAEP38570 1179 aa25.55■■□□□ 1.68
SSBP4-213ENST00000602088 ROCK1Q13464 1354 aa25.55■■□□□ 1.68
SSBP4-213ENST00000602088 ZC3H13Q5T200 1668 aaKnown RBP25.55■■□□□ 1.68
SSBP4-213ENST00000602088 PZPP20742 1482 aa25.53■■□□□ 1.68
SSBP4-213ENST00000602088 PRDM15P57071 1507 aaPredicted RBP25.53■■□□□ 1.68
SSBP4-213ENST00000602088 DEPDC5O75140 1603 aa25.53■■□□□ 1.68
SSBP4-213ENST00000602088 ANKRD50Q9ULJ7 1429 aa25.53■■□□□ 1.68
SSBP4-213ENST00000602088 FBXO31Q5XUX0 539 aaPredicted RBP25.52■■□□□ 1.68
SSBP4-213ENST00000602088 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.51■■□□□ 1.67
SSBP4-213ENST00000602088 CEP152O94986 1710 aa25.49■■□□□ 1.67
SSBP4-213ENST00000602088 KANK1Q14678 1352 aa25.47■■□□□ 1.67
SSBP4-213ENST00000602088 TNRQ92752 1358 aa25.45■■□□□ 1.67
SSBP4-213ENST00000602088 CAMSAP1Q5T5Y3 1602 aa25.45■■□□□ 1.67
SSBP4-213ENST00000602088 MYO3AQ8NEV4 1616 aa25.45■■□□□ 1.67
SSBP4-213ENST00000602088 VWDEQ8N2E2 1590 aa25.44■■□□□ 1.66
SSBP4-213ENST00000602088 ARHGAP31Q2M1Z3 1444 aa25.43■■□□□ 1.66
SSBP4-213ENST00000602088 ZNF142P52746 1687 aaPredicted RBP25.42■■□□□ 1.66
SSBP4-213ENST00000602088 LMTK2Q8IWU2 1503 aa25.42■■□□□ 1.66
SSBP4-213ENST00000602088 CEP170BQ9Y4F5 1589 aaPredicted RBP25.41■■□□□ 1.66
SSBP4-213ENST00000602088 A2ML1A8K2U0 1454 aa25.39■■□□□ 1.65
SSBP4-213ENST00000602088 ERVK-7P63135 1459 aa25.39■■□□□ 1.65
SSBP4-213ENST00000602088 SPATA31D1Q6ZQQ2 1576 aa25.39■■□□□ 1.65
SSBP4-213ENST00000602088 STRCQ7RTU9 1775 aa25.39■■□□□ 1.65
SSBP4-213ENST00000602088 CFAP65Q6ZU64 1925 aaKnown RBP25.37■■□□□ 1.65
SSBP4-213ENST00000602088 UNC13BO14795 1591 aa25.35■■□□□ 1.65
SSBP4-213ENST00000602088 NLRP1Q9C000 1473 aa25.35■■□□□ 1.65
SSBP4-213ENST00000602088 DMRT2Q9Y5R5 561 aa25.33■■□□□ 1.65
SSBP4-213ENST00000602088 EFCAB6Q5THR3 1501 aa25.32■■□□□ 1.64
SSBP4-213ENST00000602088 NAIPQ13075 1403 aa25.31■■□□□ 1.64
SSBP4-213ENST00000602088 PLA2R1Q13018 1463 aa25.3■■□□□ 1.64
SSBP4-213ENST00000602088 UGGT1Q9NYU2 1555 aa25.27■■□□□ 1.64
SSBP4-213ENST00000602088 TET3O43151 1660 aa25.27■■□□□ 1.64
SSBP4-213ENST00000602088 THEMISQ8N1K5 641 aaPredicted RBP25.27■■□□□ 1.64
SSBP4-213ENST00000602088 NUP155O75694 1391 aa25.27■■□□□ 1.64
SSBP4-213ENST00000602088 NCKAP5LQ9HCH0 1330 aa25.26■■□□□ 1.63
SSBP4-213ENST00000602088 HFM1A2PYH4 1435 aa25.26■■□□□ 1.63
SSBP4-213ENST00000602088 PTPRTO14522 1441 aa25.26■■□□□ 1.63
SSBP4-213ENST00000602088 IQGAP3Q86VI3 1631 aa25.26■■□□□ 1.63
SSBP4-213ENST00000602088 PKD2Q13563 968 aa25.25■■□□□ 1.63
SSBP4-213ENST00000602088 RPRD2Q5VT52 1461 aaKnown RBP25.25■■□□□ 1.63
SSBP4-213ENST00000602088 GCC2Q8IWJ2 1684 aa25.25■■□□□ 1.63
SSBP4-213ENST00000602088 NOS1P29475 1434 aa25.24■■□□□ 1.63
SSBP4-213ENST00000602088 SYNMO15061 1565 aa25.21■■□□□ 1.63
SSBP4-213ENST00000602088 UBR1Q8IWV7 1749 aa25.18■■□□□ 1.62
SSBP4-213ENST00000602088 E9PCH4 1651 aa25.18■■□□□ 1.62
SSBP4-213ENST00000602088 IDI1Q13907 227 aa25.18■■□□□ 1.62
SSBP4-213ENST00000602088 ANKLE2Q86XL3 938 aa25.17■■□□□ 1.62
SSBP4-213ENST00000602088 SLC52A1Q9NWF4 448 aa25.17■■□□□ 1.62
SSBP4-213ENST00000602088 PIK3C2BO00750 1634 aa25.16■■□□□ 1.62
SSBP4-213ENST00000602088 POLR1AO95602 1720 aaPredicted RBP25.14■■□□□ 1.61
SSBP4-213ENST00000602088 NEURL4Q96JN8 1562 aa25.12■■□□□ 1.61
SSBP4-213ENST00000602088 STAG3Q9UJ98 1225 aa25.11■■□□□ 1.61
SSBP4-213ENST00000602088 KDM5AP29375 1690 aaKnown RBP25.1■■□□□ 1.61
SSBP4-213ENST00000602088 TRIM52Q96A61 297 aa25.1■■□□□ 1.61
SSBP4-213ENST00000602088 MED14O60244 1454 aa25.09■■□□□ 1.61
SSBP4-213ENST00000602088 ARHGAP23Q9P227 1491 aa25.09■■□□□ 1.61
SSBP4-213ENST00000602088 SLIT1O75093 1534 aa25.09■■□□□ 1.61
SSBP4-213ENST00000602088 ADGRB3O60242 1522 aa25.06■■□□□ 1.6
SSBP4-213ENST00000602088 TMEM2Q9UHN6 1383 aa25.05■■□□□ 1.6
SSBP4-213ENST00000602088 NPHP4O75161 1426 aaPredicted RBP25.05■■□□□ 1.6
SSBP4-213ENST00000602088 LTKP29376 864 aa25.05■■□□□ 1.6
SSBP4-213ENST00000602088 CERKQ8TCT0 537 aa25.05■■□□□ 1.6
SSBP4-213ENST00000602088 TXNDC2Q86VQ3 553 aa25.04■■□□□ 1.6
SSBP4-213ENST00000602088 EID1Q9Y6B2 187 aa25.03■■□□□ 1.6
SSBP4-213ENST00000602088 SCAF11Q99590 1463 aaKnown RBP25.02■■□□□ 1.6
SSBP4-213ENST00000602088 LTBP4Q8N2S1 1624 aa25.02■■□□□ 1.6
SSBP4-213ENST00000602088 SETD5Q9C0A6 1442 aa25.02■■□□□ 1.6
SSBP4-213ENST00000602088 SLC4A1APQ9BWU0 796 aaKnown RBP25.01■■□□□ 1.59
SSBP4-213ENST00000602088 ZNF335Q9H4Z2 1342 aaPredicted RBP25.01■■□□□ 1.59
SSBP4-213ENST00000602088 TMEM131LA2VDJ0 1609 aa25■■□□□ 1.59
SSBP4-213ENST00000602088 SPHKAPQ2M3C7 1700 aa25■■□□□ 1.59
SSBP4-213ENST00000602088 IQGAP1P46940 1657 aa24.99■■□□□ 1.59
SSBP4-213ENST00000602088 ACIN1Q9UKV3 1341 aaKnown RBP24.97■■□□□ 1.59
SSBP4-213ENST00000602088 MYO5BQ9ULV0 1848 aa24.97■■□□□ 1.59
SSBP4-213ENST00000602088 CHGAP10645 457 aaKnown RBP24.96■■□□□ 1.59
SSBP4-213ENST00000602088 ILDR1Q86SU0 546 aaPredicted RBP24.96■■□□□ 1.59
SSBP4-213ENST00000602088 FBXO41Q8TF61 875 aa24.94■■□□□ 1.58
SSBP4-213ENST00000602088 TRPM2O94759 1503 aa24.93■■□□□ 1.58
SSBP4-213ENST00000602088 ZFYVE9O95405 1425 aa24.93■■□□□ 1.58
SSBP4-213ENST00000602088 RAB3GAP2Q9H2M9 1393 aa24.93■■□□□ 1.58
SSBP4-213ENST00000602088 RIMS2Q9UQ26 1411 aa24.92■■□□□ 1.58
SSBP4-213ENST00000602088 HDGFP51858 240 aaKnown RBP24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms