RNA–Protein interactions for RNA: ENST00000602088.7

SSBP4-213, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 622 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-213ENST00000602088 NISCHQ9Y2I1 1504 aa40.77■■■■■ 4.12
SSBP4-213ENST00000602088 CCDC180Q9P1Z9 1646 aa36.25■■■■□ 3.39
SSBP4-213ENST00000602088 ABCC9O60706 1549 aa35.55■■■■□ 3.28
SSBP4-213ENST00000602088 RB1CC1Q8TDY2 1594 aa34.16■■■■□ 3.06
SSBP4-213ENST00000602088 NACADO15069 1562 aa34.11■■■■□ 3.05
SSBP4-213ENST00000602088 DCAF8L2P0C7V8 631 aa34.1■■■■□ 3.05
SSBP4-213ENST00000602088 ZCCHC6Q5VYS8 1495 aaKnown RBP33.93■■■■□ 3.02
SSBP4-213ENST00000602088 MYO15BQ96JP2 1530 aa33.9■■■■□ 3.02
SSBP4-213ENST00000602088 DCAF1Q9Y4B6 1507 aa33.74■■■□□ 2.99
SSBP4-213ENST00000602088 UNC13AQ9UPW8 1703 aa33.39■■■□□ 2.94
SSBP4-213ENST00000602088 PABPN1Q86U42 306 aaKnown RBP eCLIP33.24■■■□□ 2.912e-7■■□□□ 12.3
SSBP4-213ENST00000602088 BICRAQ9NZM4 1560 aa33.16■■■□□ 2.9
SSBP4-213ENST00000602088 SCRIBQ14160 1630 aa33.06■■■□□ 2.88
SSBP4-213ENST00000602088 SHROOM4Q9ULL8 1493 aa32.78■■■□□ 2.84
SSBP4-213ENST00000602088 DNAJC5BQ9UF47 199 aa32.75■■■□□ 2.83
SSBP4-213ENST00000602088 EIF4G1Q04637 1599 aaKnown RBP32.27■■■□□ 2.76
SSBP4-213ENST00000602088 CC2D2AQ9P2K1 1620 aa32.15■■■□□ 2.74
SSBP4-213ENST00000602088 CECR2Q9BXF3 1484 aa31.96■■■□□ 2.71
SSBP4-213ENST00000602088 SMARCA4P51532 1647 aa31.64■■■□□ 2.65
SSBP4-213ENST00000602088 BAZ1AQ9NRL2 1556 aaPredicted RBP31.59■■■□□ 2.65
SSBP4-213ENST00000602088 NCAPD3P42695 1498 aa31.51■■■□□ 2.63
SSBP4-213ENST00000602088 ATAD2BQ9ULI0 1458 aa31.5■■■□□ 2.63
SSBP4-213ENST00000602088 SMARCA2P51531 1590 aa31.44■■■□□ 2.62
SSBP4-213ENST00000602088 MROH2BQ7Z745 1585 aa31.43■■■□□ 2.62
SSBP4-213ENST00000602088 PEG3Q9GZU2 1588 aa31.34■■■□□ 2.61
SSBP4-213ENST00000602088 HMGXB3Q12766 1538 aa31.31■■■□□ 2.6
SSBP4-213ENST00000602088 BAZ1BQ9UIG0 1483 aaKnown RBP31.22■■■□□ 2.59
SSBP4-213ENST00000602088 WIZO95785 1651 aa31.06■■■□□ 2.56
SSBP4-213ENST00000602088 RSF1Q96T23 1441 aaPredicted RBP31.06■■■□□ 2.56
SSBP4-213ENST00000602088 NESP48681 1621 aa30.76■■■□□ 2.51
SSBP4-213ENST00000602088 TOP2AP11388 1531 aaKnown RBP30.73■■■□□ 2.51
SSBP4-213ENST00000602088 LAMC3Q9Y6N6 1575 aa30.66■■■□□ 2.5
SSBP4-213ENST00000602088 ERCC6Q03468 1493 aa30.63■■■□□ 2.49
SSBP4-213ENST00000602088 CADPSQ9ULU8 1353 aa30.58■■■□□ 2.49
SSBP4-213ENST00000602088 PDS5BQ9NTI5 1447 aa30.47■■■□□ 2.47
SSBP4-213ENST00000602088 CCDC88BA6NC98 1476 aa30.39■■■□□ 2.46
SSBP4-213ENST00000602088 CFTRP13569 1480 aa30.38■■■□□ 2.45
SSBP4-213ENST00000602088 KIF21AQ7Z4S6 1674 aa30.37■■■□□ 2.45
SSBP4-213ENST00000602088 CUX2O14529 1486 aa30.35■■■□□ 2.45
SSBP4-213ENST00000602088 THOC2Q8NI27 1593 aaKnown RBP30.28■■■□□ 2.44
SSBP4-213ENST00000602088 FANCD2Q9BXW9 1451 aa30.21■■■□□ 2.43
SSBP4-213ENST00000602088 SUPT5HO00267 1087 aaKnown RBP30.21■■■□□ 2.43
SSBP4-213ENST00000602088 CEP164Q9UPV0 1460 aa30.17■■■□□ 2.42
SSBP4-213ENST00000602088 MRC2Q9UBG0 1479 aa30.14■■■□□ 2.42
SSBP4-213ENST00000602088 PRDM2Q13029 1718 aa30.1■■■□□ 2.41
SSBP4-213ENST00000602088 WDR62O43379 1518 aa30.04■■■□□ 2.4
SSBP4-213ENST00000602088 URB2Q14146 1524 aaKnown RBP29.92■■■□□ 2.38
SSBP4-213ENST00000602088 TOPBP1Q92547 1522 aa29.72■■■□□ 2.35
SSBP4-213ENST00000602088 ABCC8Q09428 1581 aa29.72■■■□□ 2.35
SSBP4-213ENST00000602088 DNMBPQ6XZF7 1577 aa29.67■■■□□ 2.34
SSBP4-213ENST00000602088 IFT140Q96RY7 1462 aa29.55■■■□□ 2.32
SSBP4-213ENST00000602088 DNAJC5Q9H3Z4 198 aa29.54■■■□□ 2.32
SSBP4-213ENST00000602088 CUX1P39880 1505 aa29.47■■■□□ 2.31
SSBP4-213ENST00000602088 POLA1P09884 1462 aaPredicted RBP29.47■■■□□ 2.31
SSBP4-213ENST00000602088 ZNF608Q9ULD9 1512 aaPredicted RBP29.43■■■□□ 2.3
SSBP4-213ENST00000602088 TARBP1Q13395 1621 aaKnown RBP29.42■■■□□ 2.3
SSBP4-213ENST00000602088 FGD5Q6ZNL6 1462 aa29.38■■■□□ 2.29
SSBP4-213ENST00000602088 SOGA1O94964 1423 aa29.36■■■□□ 2.29
SSBP4-213ENST00000602088 RAD54L2Q9Y4B4 1467 aa29.35■■■□□ 2.29
SSBP4-213ENST00000602088 EIF4G3O43432 1585 aaKnown RBP29.28■■■□□ 2.28
SSBP4-213ENST00000602088 AQRO60306 1485 aaKnown RBP eCLIP29.27■■■□□ 2.283e-7■■■■■ 66
SSBP4-213ENST00000602088 WRNQ14191 1432 aaPredicted RBP eCLIP29.26■■■□□ 2.27
SSBP4-213ENST00000602088 TDRD9Q8NDG6 1382 aaKnown RBP29.21■■■□□ 2.27
SSBP4-213ENST00000602088 TOP2BQ02880 1626 aa29.2■■■□□ 2.26
SSBP4-213ENST00000602088 BIVM-ERCC5R4GMW8 1640 aa29.2■■■□□ 2.26
SSBP4-213ENST00000602088 SYNJ1O43426 1573 aa29.18■■■□□ 2.26
SSBP4-213ENST00000602088 WDR97A6NE52 1622 aa29.15■■■□□ 2.26
SSBP4-213ENST00000602088 OSCARQ8IYS5 282 aa29.12■■■□□ 2.25
SSBP4-213ENST00000602088 ABCA10Q8WWZ4 1543 aa29.1■■■□□ 2.25
SSBP4-213ENST00000602088 GRIN2BQ13224 1484 aa29.01■■■□□ 2.23
SSBP4-213ENST00000602088 GAPVD1Q14C86 1478 aa29.01■■■□□ 2.23
SSBP4-213ENST00000602088 ABCA5Q8WWZ7 1642 aa28.98■■■□□ 2.23
SSBP4-213ENST00000602088 SNAPC4Q5SXM2 1469 aa28.97■■■□□ 2.23
SSBP4-213ENST00000602088 MAGI1Q96QZ7 1491 aaPredicted RBP28.93■■■□□ 2.22
SSBP4-213ENST00000602088 FBLN2P98095 1184 aa28.93■■■□□ 2.22
SSBP4-213ENST00000602088 CHD1O14646 1710 aa28.92■■■□□ 2.22
SSBP4-213ENST00000602088 PBRM1Q86U86 1689 aa28.92■■■□□ 2.22
SSBP4-213ENST00000602088 CHMP7Q8WUX9 453 aaPredicted RBP28.84■■■□□ 2.21
SSBP4-213ENST00000602088 SYNJ2O15056 1496 aa28.83■■■□□ 2.21
SSBP4-213ENST00000602088 ERICH3Q5RHP9 1530 aa28.74■■■□□ 2.19
SSBP4-213ENST00000602088 ADAMTS12P58397 1594 aa28.69■■■□□ 2.18
SSBP4-213ENST00000602088 FHAD1B1AJZ9 1412 aa28.68■■■□□ 2.18
SSBP4-213ENST00000602088 KIF27Q86VH2 1401 aa28.66■■■□□ 2.18
SSBP4-213ENST00000602088 GRIN2AQ12879 1464 aa28.64■■■□□ 2.17
SSBP4-213ENST00000602088 CLASP1Q7Z460 1538 aa28.63■■■□□ 2.17
SSBP4-213ENST00000602088 RIMBP3CA6NJZ7 1639 aa28.61■■■□□ 2.17
SSBP4-213ENST00000602088 RIMBP3BA6NNM3 1639 aa28.61■■■□□ 2.17
SSBP4-213ENST00000602088 RIMBP3Q9UFD9 1639 aa28.61■■■□□ 2.17
SSBP4-213ENST00000602088 ARHGEF11O15085 1522 aa28.61■■■□□ 2.17
SSBP4-213ENST00000602088 IGF1RP08069 1367 aa28.58■■■□□ 2.17
SSBP4-213ENST00000602088 TRIM41Q8WV44 630 aa28.54■■■□□ 2.16
SSBP4-213ENST00000602088 NUP160Q12769 1436 aa28.52■■■□□ 2.16
SSBP4-213ENST00000602088 CEP170Q5SW79 1584 aa28.49■■■□□ 2.15
SSBP4-213ENST00000602088 CUL7Q14999 1698 aa28.45■■■□□ 2.15
SSBP4-213ENST00000602088 CARMIL1Q5VZK9 1371 aa28.39■■■□□ 2.14
SSBP4-213ENST00000602088 RUSC2Q8N2Y8 1516 aa28.39■■■□□ 2.14
SSBP4-213ENST00000602088 CYB5RLQ6IPT4 315 aa28.38■■■□□ 2.13
SSBP4-213ENST00000602088 ARAP1Q96P48 1450 aa28.38■■■□□ 2.13
SSBP4-213ENST00000602088 SHROOM2Q13796 1616 aa28.3■■■□□ 2.12
SSBP4-213ENST00000602088 JPH4Q96JJ6 628 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms