RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 PPP6R1Q9UPN7 881 aa30.62■■■□□ 2.49
SSBP4-210ENST00000601444 CLTCQ00610 1675 aaKnown RBP30.61■■■□□ 2.49
SSBP4-210ENST00000601444 ZMYM3Q14202 1370 aa30.6■■■□□ 2.49
SSBP4-210ENST00000601444 ERBINQ96RT1 1412 aa30.6■■■□□ 2.49
SSBP4-210ENST00000601444 EIF2AK4Q9P2K8 1649 aaKnown RBP30.59■■■□□ 2.49
SSBP4-210ENST00000601444 C3P01024 1663 aa30.58■■■□□ 2.49
SSBP4-210ENST00000601444 WASHC2CQ9Y4E1 1318 aa30.56■■■□□ 2.48
SSBP4-210ENST00000601444 RNF17Q9BXT8 1623 aaKnown RBP30.56■■■□□ 2.48
SSBP4-210ENST00000601444 ROCK1Q13464 1354 aa30.54■■■□□ 2.48
SSBP4-210ENST00000601444 MROH1Q8NDA8 1641 aa30.54■■■□□ 2.48
SSBP4-210ENST00000601444 MROH2AA6NES4 1674 aa30.53■■■□□ 2.48
SSBP4-210ENST00000601444 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.52■■■□□ 2.48
SSBP4-210ENST00000601444 KDM5DQ9BY66 1539 aa30.52■■■□□ 2.48
SSBP4-210ENST00000601444 ANKRD50Q9ULJ7 1429 aa30.51■■■□□ 2.47
SSBP4-210ENST00000601444 ABCC3O15438 1527 aa30.46■■■□□ 2.47
SSBP4-210ENST00000601444 LMTK3Q96Q04 1460 aa30.45■■■□□ 2.47
SSBP4-210ENST00000601444 FAM135AQ9P2D6 1515 aa30.45■■■□□ 2.47
SSBP4-210ENST00000601444 PRDM15P57071 1507 aaPredicted RBP30.44■■■□□ 2.46
SSBP4-210ENST00000601444 FBXO31Q5XUX0 539 aaPredicted RBP30.44■■■□□ 2.46
SSBP4-210ENST00000601444 DEPDC5O75140 1603 aa30.44■■■□□ 2.46
SSBP4-210ENST00000601444 NPATQ14207 1427 aa30.39■■■□□ 2.46
SSBP4-210ENST00000601444 CEP152O94986 1710 aa30.39■■■□□ 2.46
SSBP4-210ENST00000601444 HSPA2P54652 639 aa30.39■■■□□ 2.46
SSBP4-210ENST00000601444 PZPP20742 1482 aa30.38■■■□□ 2.45
SSBP4-210ENST00000601444 ZC3H13Q5T200 1668 aaKnown RBP30.37■■■□□ 2.45
SSBP4-210ENST00000601444 KANK1Q14678 1352 aa30.37■■■□□ 2.45
SSBP4-210ENST00000601444 PREX1Q8TCU6 1659 aa30.36■■■□□ 2.45
SSBP4-210ENST00000601444 UHRF1BP1Q6BDS2 1440 aa30.35■■■□□ 2.45
SSBP4-210ENST00000601444 VWDEQ8N2E2 1590 aa30.34■■■□□ 2.45
SSBP4-210ENST00000601444 NAIPQ13075 1403 aa30.34■■■□□ 2.45
SSBP4-210ENST00000601444 CAMSAP1Q5T5Y3 1602 aa30.33■■■□□ 2.45
SSBP4-210ENST00000601444 SETD1BQ9UPS6 1966 aaKnown RBP30.32■■■□□ 2.44
SSBP4-210ENST00000601444 UNC13BO14795 1591 aa30.28■■■□□ 2.44
SSBP4-210ENST00000601444 LMTK2Q8IWU2 1503 aa30.28■■■□□ 2.44
SSBP4-210ENST00000601444 TNRQ92752 1358 aa30.28■■■□□ 2.44
SSBP4-210ENST00000601444 HFM1A2PYH4 1435 aa30.27■■■□□ 2.44
SSBP4-210ENST00000601444 ARHGAP31Q2M1Z3 1444 aa30.25■■■□□ 2.43
SSBP4-210ENST00000601444 MYO3AQ8NEV4 1616 aa30.24■■■□□ 2.43
SSBP4-210ENST00000601444 ERVK-7P63135 1459 aa30.24■■■□□ 2.43
SSBP4-210ENST00000601444 GCC2Q8IWJ2 1684 aa30.23■■■□□ 2.43
SSBP4-210ENST00000601444 NUP155O75694 1391 aa30.23■■■□□ 2.43
SSBP4-210ENST00000601444 SPATA31D1Q6ZQQ2 1576 aa30.21■■■□□ 2.43
SSBP4-210ENST00000601444 EFCAB6Q5THR3 1501 aa30.19■■■□□ 2.42
SSBP4-210ENST00000601444 CFAP65Q6ZU64 1925 aaKnown RBP30.19■■■□□ 2.42
SSBP4-210ENST00000601444 CEP170BQ9Y4F5 1589 aaPredicted RBP30.18■■■□□ 2.42
SSBP4-210ENST00000601444 IQGAP3Q86VI3 1631 aa30.16■■■□□ 2.42
SSBP4-210ENST00000601444 A2ML1A8K2U0 1454 aa30.15■■■□□ 2.42
SSBP4-210ENST00000601444 TET3O43151 1660 aa30.14■■■□□ 2.41
SSBP4-210ENST00000601444 ZNF142P52746 1687 aaPredicted RBP30.14■■■□□ 2.41
SSBP4-210ENST00000601444 NLRP1Q9C000 1473 aa30.12■■■□□ 2.41
SSBP4-210ENST00000601444 TRIM52Q96A61 297 aa30.11■■■□□ 2.41
SSBP4-210ENST00000601444 NOS1P29475 1434 aa30.08■■■□□ 2.41
SSBP4-210ENST00000601444 RPRD2Q5VT52 1461 aaKnown RBP30.07■■■□□ 2.4
SSBP4-210ENST00000601444 E9PCH4 1651 aa30.07■■■□□ 2.4
SSBP4-210ENST00000601444 STRCQ7RTU9 1775 aa30.06■■■□□ 2.4
SSBP4-210ENST00000601444 SYNMO15061 1565 aa30.06■■■□□ 2.4
SSBP4-210ENST00000601444 SETD5Q9C0A6 1442 aa30.05■■■□□ 2.4
SSBP4-210ENST00000601444 UGGT1Q9NYU2 1555 aa30.04■■■□□ 2.4
SSBP4-210ENST00000601444 IDI1Q13907 227 aa30.04■■■□□ 2.4
SSBP4-210ENST00000601444 NCKAP5LQ9HCH0 1330 aa30.03■■■□□ 2.4
SSBP4-210ENST00000601444 THEMISQ8N1K5 641 aaPredicted RBP30.01■■■□□ 2.39
SSBP4-210ENST00000601444 PLA2R1Q13018 1463 aa29.98■■■□□ 2.39
SSBP4-210ENST00000601444 PIK3C2BO00750 1634 aa29.97■■■□□ 2.39
SSBP4-210ENST00000601444 RAB3GAP2Q9H2M9 1393 aa29.97■■■□□ 2.39
SSBP4-210ENST00000601444 SLC4A1APQ9BWU0 796 aaKnown RBP29.96■■■□□ 2.39
SSBP4-210ENST00000601444 SLC52A1Q9NWF4 448 aa29.96■■■□□ 2.39
SSBP4-210ENST00000601444 PKD2Q13563 968 aa29.95■■■□□ 2.39
SSBP4-210ENST00000601444 UBR1Q8IWV7 1749 aa29.95■■■□□ 2.38
SSBP4-210ENST00000601444 STAG3Q9UJ98 1225 aa29.93■■■□□ 2.38
SSBP4-210ENST00000601444 DMRT2Q9Y5R5 561 aa29.92■■■□□ 2.38
SSBP4-210ENST00000601444 PTPRTO14522 1441 aa29.89■■■□□ 2.38
SSBP4-210ENST00000601444 FOXD1Q16676 465 aa29.89■■■□□ 2.38
SSBP4-210ENST00000601444 ANKLE2Q86XL3 938 aa29.89■■■□□ 2.38
SSBP4-210ENST00000601444 MPHOSPH9Q99550 1183 aa29.89■■■□□ 2.38
SSBP4-210ENST00000601444 ADGRB3O60242 1522 aa29.85■■■□□ 2.37
SSBP4-210ENST00000601444 SPHKAPQ2M3C7 1700 aa29.85■■■□□ 2.37
SSBP4-210ENST00000601444 CHGAP10645 457 aaKnown RBP29.84■■■□□ 2.37
SSBP4-210ENST00000601444 LTKP29376 864 aa29.84■■■□□ 2.37
SSBP4-210ENST00000601444 NEURL4Q96JN8 1562 aa29.84■■■□□ 2.37
SSBP4-210ENST00000601444 ARHGAP23Q9P227 1491 aa29.83■■■□□ 2.37
SSBP4-210ENST00000601444 TMEM2Q9UHN6 1383 aa29.82■■■□□ 2.36
SSBP4-210ENST00000601444 SLIT1O75093 1534 aa29.81■■■□□ 2.36
SSBP4-210ENST00000601444 TXNDC2Q86VQ3 553 aa29.81■■■□□ 2.36
SSBP4-210ENST00000601444 POLR1AO95602 1720 aaPredicted RBP29.81■■■□□ 2.36
SSBP4-210ENST00000601444 KDM5AP29375 1690 aaKnown RBP29.81■■■□□ 2.36
SSBP4-210ENST00000601444 TMEM131LA2VDJ0 1609 aa29.8■■■□□ 2.36
SSBP4-210ENST00000601444 ACIN1Q9UKV3 1341 aaKnown RBP29.79■■■□□ 2.36
SSBP4-210ENST00000601444 TRPM2O94759 1503 aa29.77■■■□□ 2.36
SSBP4-210ENST00000601444 HRCP23327 699 aa29.77■■■□□ 2.36
SSBP4-210ENST00000601444 MED14O60244 1454 aa29.76■■■□□ 2.35
SSBP4-210ENST00000601444 SCAF11Q99590 1463 aaKnown RBP29.76■■■□□ 2.35
SSBP4-210ENST00000601444 EID1Q9Y6B2 187 aa29.76■■■□□ 2.35
SSBP4-210ENST00000601444 NPHP4O75161 1426 aaPredicted RBP29.76■■■□□ 2.35
SSBP4-210ENST00000601444 MYO5BQ9ULV0 1848 aa29.75■■■□□ 2.35
SSBP4-210ENST00000601444 CLTCL1P53675 1640 aa29.75■■■□□ 2.35
SSBP4-210ENST00000601444 TRIM26Q12899 539 aaPredicted RBP29.73■■■□□ 2.35
SSBP4-210ENST00000601444 NUTM2DQ5VT03 806 aaPredicted RBP29.7■■■□□ 2.35
SSBP4-210ENST00000601444 ZFYVE9O95405 1425 aa29.7■■■□□ 2.34
SSBP4-210ENST00000601444 RIMS2Q9UQ26 1411 aa29.7■■■□□ 2.34
SSBP4-210ENST00000601444 ZNF335Q9H4Z2 1342 aaPredicted RBP29.7■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms