RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 KIF3BO15066 747 aa16.92■□□□□ 0.3
VRK3-223ENST00000601341 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.92■□□□□ 0.3
VRK3-223ENST00000601341 UNC13BO14795 1591 aa16.92■□□□□ 0.3
VRK3-223ENST00000601341 YEATS2Q9ULM3 1422 aa16.9■□□□□ 0.3
VRK3-223ENST00000601341 ABCA6Q8N139 1617 aa16.9■□□□□ 0.3
VRK3-223ENST00000601341 EIF2AK4Q9P2K8 1649 aaKnown RBP16.9■□□□□ 0.3
VRK3-223ENST00000601341 PKD2Q13563 968 aa16.89■□□□□ 0.3
VRK3-223ENST00000601341 DIP2CQ9Y2E4 1556 aa16.89■□□□□ 0.29
VRK3-223ENST00000601341 FAM135AQ9P2D6 1515 aa16.88■□□□□ 0.29
VRK3-223ENST00000601341 KANK1Q14678 1352 aa16.87■□□□□ 0.29
VRK3-223ENST00000601341 FOXD1Q16676 465 aa16.87■□□□□ 0.29
VRK3-223ENST00000601341 SIN3AQ96ST3 1273 aa16.87■□□□□ 0.29
VRK3-223ENST00000601341 ATP10AO60312 1499 aa16.86■□□□□ 0.29
VRK3-223ENST00000601341 DEPDC5O75140 1603 aa16.85■□□□□ 0.29
VRK3-223ENST00000601341 NEUROD1Q13562 356 aa16.85■□□□□ 0.29
VRK3-223ENST00000601341 ANKRD30BQ9BXX2 1392 aa16.85■□□□□ 0.29
VRK3-223ENST00000601341 IQGAP3Q86VI3 1631 aa16.85■□□□□ 0.29
VRK3-223ENST00000601341 CENPBP07199 599 aaPredicted RBP16.84■□□□□ 0.29
VRK3-223ENST00000601341 TIMELESSQ9UNS1 1208 aa16.84■□□□□ 0.29
VRK3-223ENST00000601341 GGT6Q6P531 493 aa16.82■□□□□ 0.28
VRK3-223ENST00000601341 PRDM15P57071 1507 aaPredicted RBP16.82■□□□□ 0.28
VRK3-223ENST00000601341 REREQ9P2R6 1566 aa16.81■□□□□ 0.28
VRK3-223ENST00000601341 BCORL1Q5H9F3 1711 aa16.81■□□□□ 0.28
VRK3-223ENST00000601341 RNF17Q9BXT8 1623 aaKnown RBP16.81■□□□□ 0.28
VRK3-223ENST00000601341 VWDEQ8N2E2 1590 aa16.81■□□□□ 0.28
VRK3-223ENST00000601341 ARHGEF40Q8TER5 1519 aa16.8■□□□□ 0.28
VRK3-223ENST00000601341 MROH1Q8NDA8 1641 aa16.8■□□□□ 0.28
VRK3-223ENST00000601341 AGLP35573 1532 aa16.77■□□□□ 0.28
VRK3-223ENST00000601341 TONSLQ96HA7 1378 aa16.77■□□□□ 0.27
VRK3-223ENST00000601341 WASHC2CQ9Y4E1 1318 aa16.76■□□□□ 0.27
VRK3-223ENST00000601341 LMTK2Q8IWU2 1503 aa16.76■□□□□ 0.27
VRK3-223ENST00000601341 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
VRK3-223ENST00000601341 RPRD2Q5VT52 1461 aaKnown RBP16.75■□□□□ 0.27
VRK3-223ENST00000601341 PPP6R1Q9UPN7 881 aa16.74■□□□□ 0.27
VRK3-223ENST00000601341 TET3O43151 1660 aa16.74■□□□□ 0.27
VRK3-223ENST00000601341 ABCC3O15438 1527 aa16.71■□□□□ 0.27
VRK3-223ENST00000601341 CCDC144AA2RUR9 1427 aa16.71■□□□□ 0.27
VRK3-223ENST00000601341 PLA2R1Q13018 1463 aa16.71■□□□□ 0.27
VRK3-223ENST00000601341 EFCAB6Q5THR3 1501 aa16.7■□□□□ 0.26
VRK3-223ENST00000601341 E9PCH4 1651 aa16.69■□□□□ 0.26
VRK3-223ENST00000601341 ARID4BQ4LE39 1312 aaPredicted RBP16.69■□□□□ 0.26
VRK3-223ENST00000601341 PTPRTO14522 1441 aa16.69■□□□□ 0.26
VRK3-223ENST00000601341 PPP1R15AO75807 674 aaPredicted RBP16.69■□□□□ 0.26
VRK3-223ENST00000601341 CEP152O94986 1710 aa16.67■□□□□ 0.26
VRK3-223ENST00000601341 ZC3H13Q5T200 1668 aaKnown RBP16.67■□□□□ 0.26
VRK3-223ENST00000601341 NPATQ14207 1427 aa16.67■□□□□ 0.26
VRK3-223ENST00000601341 MLECQ14165 292 aa16.66■□□□□ 0.26
VRK3-223ENST00000601341 L3MBTL2Q969R5 705 aa16.66■□□□□ 0.26
VRK3-223ENST00000601341 ARHGAP31Q2M1Z3 1444 aa16.66■□□□□ 0.26
VRK3-223ENST00000601341 SIGLEC1Q9BZZ2 1709 aa16.66■□□□□ 0.26
VRK3-223ENST00000601341 TRPM2O94759 1503 aa16.65■□□□□ 0.26
VRK3-223ENST00000601341 ESF1Q9H501 851 aaKnown RBP16.64■□□□□ 0.25
VRK3-223ENST00000601341 CAMSAP1Q5T5Y3 1602 aa16.63■□□□□ 0.25
VRK3-223ENST00000601341 SPHKAPQ2M3C7 1700 aa16.62■□□□□ 0.25
VRK3-223ENST00000601341 CNTLNQ9NXG0 1405 aa16.61■□□□□ 0.25
VRK3-223ENST00000601341 MIER1Q8N108 512 aa16.6■□□□□ 0.25
VRK3-223ENST00000601341 PELP1Q8IZL8 1130 aaKnown RBP16.59■□□□□ 0.25
VRK3-223ENST00000601341 NOS1P29475 1434 aa16.59■□□□□ 0.25
VRK3-223ENST00000601341 RGL3Q3MIN7 710 aa16.57■□□□□ 0.24
VRK3-223ENST00000601341 CLTCL1P53675 1640 aa16.56■□□□□ 0.24
VRK3-223ENST00000601341 DCAF11Q8TEB1 546 aa16.56■□□□□ 0.24
VRK3-223ENST00000601341 SPATA31E1Q6ZUB1 1445 aa16.56■□□□□ 0.24
VRK3-223ENST00000601341 ZMYM3Q14202 1370 aa16.55■□□□□ 0.24
VRK3-223ENST00000601341 CLTCQ00610 1675 aaKnown RBP16.55■□□□□ 0.24
VRK3-223ENST00000601341 SLC52A1Q9NWF4 448 aa16.55■□□□□ 0.24
VRK3-223ENST00000601341 FBXO31Q5XUX0 539 aaPredicted RBP16.54■□□□□ 0.24
VRK3-223ENST00000601341 STAC3Q96MF2 364 aa16.53■□□□□ 0.24
VRK3-223ENST00000601341 KDM2AQ9Y2K7 1162 aa16.53■□□□□ 0.24
VRK3-223ENST00000601341 NEURL4Q96JN8 1562 aa16.53■□□□□ 0.24
VRK3-223ENST00000601341 UGGT1Q9NYU2 1555 aa16.53■□□□□ 0.24
VRK3-223ENST00000601341 ERVK-7P63135 1459 aa16.52■□□□□ 0.24
VRK3-223ENST00000601341 NBPF8Q3BBV2 869 aa16.51■□□□□ 0.23
VRK3-223ENST00000601341 UHRF1BP1Q6BDS2 1440 aa16.51■□□□□ 0.23
VRK3-223ENST00000601341 SYNMO15061 1565 aa16.51■□□□□ 0.23
VRK3-223ENST00000601341 CFAP65Q6ZU64 1925 aaKnown RBP16.5■□□□□ 0.23
VRK3-223ENST00000601341 PREX1Q8TCU6 1659 aa16.5■□□□□ 0.23
VRK3-223ENST00000601341 IDI1Q13907 227 aa16.5■□□□□ 0.23
VRK3-223ENST00000601341 ZNF326Q5BKZ1 582 aaKnown RBP16.5■□□□□ 0.23
VRK3-223ENST00000601341 CHGAP10645 457 aaKnown RBP16.49■□□□□ 0.23
VRK3-223ENST00000601341 SPATA31D1Q6ZQQ2 1576 aa16.49■□□□□ 0.23
VRK3-223ENST00000601341 GTF3C3Q9Y5Q9 886 aa16.49■□□□□ 0.23
VRK3-223ENST00000601341 PIK3C2BO00750 1634 aa16.48■□□□□ 0.23
VRK3-223ENST00000601341 MROH2AA6NES4 1674 aa16.47■□□□□ 0.23
VRK3-223ENST00000601341 KIF1BO60333 1816 aa16.47■□□□□ 0.23
VRK3-223ENST00000601341 ADGRB3O60242 1522 aa16.46■□□□□ 0.23
VRK3-223ENST00000601341 PRAG1Q86YV5 1406 aa16.45■□□□□ 0.22
VRK3-223ENST00000601341 RPGRIP1LQ68CZ1 1315 aa16.45■□□□□ 0.22
VRK3-223ENST00000601341 TNRQ92752 1358 aa16.44■□□□□ 0.22
VRK3-223ENST00000601341 FER1L4A9Z1Z3 1794 aa16.43■□□□□ 0.22
VRK3-223ENST00000601341 STAG3Q9UJ98 1225 aa16.43■□□□□ 0.22
VRK3-223ENST00000601341 CEBPAP49715 358 aaPredicted RBP16.42■□□□□ 0.22
VRK3-223ENST00000601341 RALGAPBQ86X10 1494 aa16.42■□□□□ 0.22
VRK3-223ENST00000601341 EIF4G2P78344 907 aaKnown RBP eCLIP16.41■□□□□ 0.221e-6■■■■■ 27.9
VRK3-223ENST00000601341 MYOM2P54296 1465 aa16.4■□□□□ 0.22
VRK3-223ENST00000601341 ROCK2O75116 1388 aaKnown RBP16.39■□□□□ 0.21
VRK3-223ENST00000601341 VGFO15240 615 aaPredicted RBP16.38■□□□□ 0.21
VRK3-223ENST00000601341 CARD11Q9BXL7 1154 aa16.38■□□□□ 0.21
VRK3-223ENST00000601341 TMEM131LA2VDJ0 1609 aa16.38■□□□□ 0.21
VRK3-223ENST00000601341 MADDQ8WXG6 1647 aa16.38■□□□□ 0.21
VRK3-223ENST00000601341 ADAMTSL3P82987 1691 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms