RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 NISCHQ9Y2I1 1504 aa26.69■■□□□ 1.86
VRK3-223ENST00000601341 CCDC180Q9P1Z9 1646 aa23.35■■□□□ 1.33
VRK3-223ENST00000601341 ZCCHC6Q5VYS8 1495 aaKnown RBP22.37■■□□□ 1.17
VRK3-223ENST00000601341 ABCC9O60706 1549 aa22.29■■□□□ 1.16
VRK3-223ENST00000601341 DCAF8L2P0C7V8 631 aa22.14■■□□□ 1.13
VRK3-223ENST00000601341 DCAF1Q9Y4B6 1507 aa22.09■■□□□ 1.13
VRK3-223ENST00000601341 MYO15BQ96JP2 1530 aa21.93■■□□□ 1.1
VRK3-223ENST00000601341 NACADO15069 1562 aa21.84■■□□□ 1.09
VRK3-223ENST00000601341 RB1CC1Q8TDY2 1594 aa21.7■■□□□ 1.06
VRK3-223ENST00000601341 SHROOM4Q9ULL8 1493 aa21.58■■□□□ 1.05
VRK3-223ENST00000601341 SCRIBQ14160 1630 aa21.42■■□□□ 1.02
VRK3-223ENST00000601341 UNC13AQ9UPW8 1703 aa21.13■□□□□ 0.97
VRK3-223ENST00000601341 BICRAQ9NZM4 1560 aa21■□□□□ 0.95
VRK3-223ENST00000601341 PABPN1Q86U42 306 aaKnown RBP eCLIP20.99■□□□□ 0.95
VRK3-223ENST00000601341 CECR2Q9BXF3 1484 aa20.73■□□□□ 0.91
VRK3-223ENST00000601341 SUPT5HO00267 1087 aaKnown RBP20.69■□□□□ 0.9
VRK3-223ENST00000601341 BAZ1AQ9NRL2 1556 aaPredicted RBP20.64■□□□□ 0.89
VRK3-223ENST00000601341 RSF1Q96T23 1441 aaPredicted RBP20.62■□□□□ 0.89
VRK3-223ENST00000601341 MROH2BQ7Z745 1585 aa20.58■□□□□ 0.89
VRK3-223ENST00000601341 SMARCA4P51532 1647 aa20.54■□□□□ 0.88
VRK3-223ENST00000601341 EIF4G1Q04637 1599 aaKnown RBP20.41■□□□□ 0.86
VRK3-223ENST00000601341 WIZO95785 1651 aa20.37■□□□□ 0.85
VRK3-223ENST00000601341 PEG3Q9GZU2 1588 aa20.32■□□□□ 0.84
VRK3-223ENST00000601341 ATAD2BQ9ULI0 1458 aa20.29■□□□□ 0.84
VRK3-223ENST00000601341 SMARCA2P51531 1590 aa20.28■□□□□ 0.84
VRK3-223ENST00000601341 TOP2AP11388 1531 aaKnown RBP20.2■□□□□ 0.82
VRK3-223ENST00000601341 NCAPD3P42695 1498 aa20.18■□□□□ 0.82
VRK3-223ENST00000601341 BAZ1BQ9UIG0 1483 aaKnown RBP20.16■□□□□ 0.82
VRK3-223ENST00000601341 CC2D2AQ9P2K1 1620 aa20.15■□□□□ 0.82
VRK3-223ENST00000601341 HMGXB3Q12766 1538 aa20.11■□□□□ 0.81
VRK3-223ENST00000601341 CCDC88BA6NC98 1476 aa20■□□□□ 0.79
VRK3-223ENST00000601341 DNAJC5BQ9UF47 199 aa19.85■□□□□ 0.77
VRK3-223ENST00000601341 CHIC1Q5VXU3 224 aa19.7■□□□□ 0.74
VRK3-223ENST00000601341 CFTRP13569 1480 aa19.66■□□□□ 0.74
VRK3-223ENST00000601341 CADPSQ9ULU8 1353 aa19.65■□□□□ 0.74
VRK3-223ENST00000601341 TRIM41Q8WV44 630 aa19.51■□□□□ 0.71
VRK3-223ENST00000601341 LAMC3Q9Y6N6 1575 aa19.5■□□□□ 0.71
VRK3-223ENST00000601341 NESP48681 1621 aa19.48■□□□□ 0.71
VRK3-223ENST00000601341 ABCC8Q09428 1581 aa19.46■□□□□ 0.71
VRK3-223ENST00000601341 PRDM2Q13029 1718 aa19.44■□□□□ 0.7
VRK3-223ENST00000601341 WRNQ14191 1432 aaPredicted RBP eCLIP19.44■□□□□ 0.7
VRK3-223ENST00000601341 FANCD2Q9BXW9 1451 aa19.4■□□□□ 0.7
VRK3-223ENST00000601341 PDS5BQ9NTI5 1447 aa19.4■□□□□ 0.7
VRK3-223ENST00000601341 CEP164Q9UPV0 1460 aa19.31■□□□□ 0.68
VRK3-223ENST00000601341 SYNJ1O43426 1573 aa19.3■□□□□ 0.68
VRK3-223ENST00000601341 TOP2BQ02880 1626 aa19.27■□□□□ 0.68
VRK3-223ENST00000601341 CUX1P39880 1505 aa19.26■□□□□ 0.67
VRK3-223ENST00000601341 BIVM-ERCC5R4GMW8 1640 aa19.23■□□□□ 0.67
VRK3-223ENST00000601341 KIF21AQ7Z4S6 1674 aa19.2■□□□□ 0.66
VRK3-223ENST00000601341 DNMBPQ6XZF7 1577 aa19.17■□□□□ 0.66
VRK3-223ENST00000601341 ERCC6Q03468 1493 aa19.17■□□□□ 0.66
VRK3-223ENST00000601341 TOPBP1Q92547 1522 aa19.16■□□□□ 0.66
VRK3-223ENST00000601341 URB2Q14146 1524 aaKnown RBP19.15■□□□□ 0.66
VRK3-223ENST00000601341 MRC2Q9UBG0 1479 aa19.13■□□□□ 0.65
VRK3-223ENST00000601341 FAM9AQ8IZU1 332 aaPredicted RBP19.1■□□□□ 0.65
VRK3-223ENST00000601341 FGD5Q6ZNL6 1462 aa19.1■□□□□ 0.65
VRK3-223ENST00000601341 SOGA1O94964 1423 aa19.09■□□□□ 0.65
VRK3-223ENST00000601341 EEA1Q15075 1411 aa19.07■□□□□ 0.64
VRK3-223ENST00000601341 POLA1P09884 1462 aaPredicted RBP19.06■□□□□ 0.64
VRK3-223ENST00000601341 WDR62O43379 1518 aa19.02■□□□□ 0.64
VRK3-223ENST00000601341 RUSC2Q8N2Y8 1516 aa19■□□□□ 0.63
VRK3-223ENST00000601341 CSRNP3Q8WYN3 585 aa18.98■□□□□ 0.63
VRK3-223ENST00000601341 KIF27Q86VH2 1401 aa18.98■□□□□ 0.63
VRK3-223ENST00000601341 THOC2Q8NI27 1593 aaKnown RBP18.97■□□□□ 0.63
VRK3-223ENST00000601341 RAD54L2Q9Y4B4 1467 aa18.97■□□□□ 0.63
VRK3-223ENST00000601341 CUX2O14529 1486 aa18.95■□□□□ 0.62
VRK3-223ENST00000601341 ABCA10Q8WWZ4 1543 aa18.95■□□□□ 0.62
VRK3-223ENST00000601341 LOC105371045A0A1W2PR82 267 aa18.91■□□□□ 0.62
VRK3-223ENST00000601341 IFT140Q96RY7 1462 aa18.88■□□□□ 0.61
VRK3-223ENST00000601341 TARBP1Q13395 1621 aaKnown RBP18.86■□□□□ 0.61
VRK3-223ENST00000601341 TDRD9Q8NDG6 1382 aaKnown RBP18.84■□□□□ 0.61
VRK3-223ENST00000601341 WDR97A6NE52 1622 aa18.83■□□□□ 0.6
VRK3-223ENST00000601341 IGF1RP08069 1367 aa18.83■□□□□ 0.6
VRK3-223ENST00000601341 EHMT2Q96KQ7 1210 aa18.81■□□□□ 0.6
VRK3-223ENST00000601341 GAPVD1Q14C86 1478 aa18.79■□□□□ 0.6
VRK3-223ENST00000601341 ABCA5Q8WWZ7 1642 aa18.77■□□□□ 0.6
VRK3-223ENST00000601341 PRXQ9BXM0 1461 aa18.77■□□□□ 0.6
VRK3-223ENST00000601341 KIF21BO75037 1637 aa18.77■□□□□ 0.59
VRK3-223ENST00000601341 GOLGA3Q08378 1498 aa18.76■□□□□ 0.59
VRK3-223ENST00000601341 AQRO60306 1485 aaKnown RBP eCLIP18.74■□□□□ 0.595e-7■■■■■ 54.7
VRK3-223ENST00000601341 ZNF608Q9ULD9 1512 aaPredicted RBP18.73■□□□□ 0.59
VRK3-223ENST00000601341 CARMIL1Q5VZK9 1371 aa18.73■□□□□ 0.59
VRK3-223ENST00000601341 ERICH3Q5RHP9 1530 aa18.73■□□□□ 0.59
VRK3-223ENST00000601341 UBTFP17480 764 aaKnown RBP18.72■□□□□ 0.59
VRK3-223ENST00000601341 RAPGEF2Q9Y4G8 1499 aa18.71■□□□□ 0.59
VRK3-223ENST00000601341 GRIN2BQ13224 1484 aa18.69■□□□□ 0.58
VRK3-223ENST00000601341 TNIKQ9UKE5 1360 aa18.68■□□□□ 0.58
VRK3-223ENST00000601341 CUL7Q14999 1698 aa18.66■□□□□ 0.58
VRK3-223ENST00000601341 EIF4G3O43432 1585 aaKnown RBP18.65■□□□□ 0.58
VRK3-223ENST00000601341 PBRM1Q86U86 1689 aa18.62■□□□□ 0.57
VRK3-223ENST00000601341 FHAD1B1AJZ9 1412 aa18.6■□□□□ 0.57
VRK3-223ENST00000601341 SNAPC4Q5SXM2 1469 aa18.56■□□□□ 0.56
VRK3-223ENST00000601341 MAGI1Q96QZ7 1491 aaPredicted RBP18.55■□□□□ 0.56
VRK3-223ENST00000601341 ADAMTS12P58397 1594 aa18.54■□□□□ 0.56
VRK3-223ENST00000601341 CEP162Q5TB80 1403 aa18.54■□□□□ 0.56
VRK3-223ENST00000601341 CHMP7Q8WUX9 453 aaPredicted RBP18.48■□□□□ 0.55
VRK3-223ENST00000601341 SYNJ2O15056 1496 aa18.48■□□□□ 0.55
VRK3-223ENST00000601341 HRCP23327 699 aa18.47■□□□□ 0.55
VRK3-223ENST00000601341 CLIP1P30622 1438 aa18.46■□□□□ 0.55
VRK3-223ENST00000601341 GRIN2AQ12879 1464 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms