RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 ACIN1Q9UKV3 1341 aaKnown RBP24.92■■□□□ 1.58
SHKBP1-219ENST00000599575 RNF17Q9BXT8 1623 aaKnown RBP24.92■■□□□ 1.58
SHKBP1-219ENST00000599575 NAIPQ13075 1403 aa24.9■■□□□ 1.58
SHKBP1-219ENST00000599575 KANK1Q14678 1352 aa24.88■■□□□ 1.57
SHKBP1-219ENST00000599575 MADDQ8WXG6 1647 aa24.87■■□□□ 1.57
SHKBP1-219ENST00000599575 WASHC2CQ9Y4E1 1318 aa24.86■■□□□ 1.57
SHKBP1-219ENST00000599575 KDM5DQ9BY66 1539 aa24.86■■□□□ 1.57
SHKBP1-219ENST00000599575 PRDM15P57071 1507 aaPredicted RBP24.86■■□□□ 1.57
SHKBP1-219ENST00000599575 DEPDC5O75140 1603 aa24.85■■□□□ 1.57
SHKBP1-219ENST00000599575 PTPRMP28827 1452 aa24.84■■□□□ 1.57
SHKBP1-219ENST00000599575 FER1L4A9Z1Z3 1794 aa24.83■■□□□ 1.57
SHKBP1-219ENST00000599575 GCC2Q8IWJ2 1684 aa24.82■■□□□ 1.56
SHKBP1-219ENST00000599575 MROH1Q8NDA8 1641 aa24.82■■□□□ 1.56
SHKBP1-219ENST00000599575 TRIM26Q12899 539 aaPredicted RBP24.81■■□□□ 1.56
SHKBP1-219ENST00000599575 MROH2AA6NES4 1674 aa24.8■■□□□ 1.56
SHKBP1-219ENST00000599575 ZC3H13Q5T200 1668 aaKnown RBP24.8■■□□□ 1.56
SHKBP1-219ENST00000599575 ZMYM3Q14202 1370 aa24.8■■□□□ 1.56
SHKBP1-219ENST00000599575 LMTK2Q8IWU2 1503 aa24.78■■□□□ 1.56
SHKBP1-219ENST00000599575 VWDEQ8N2E2 1590 aa24.78■■□□□ 1.56
SHKBP1-219ENST00000599575 RIMS1Q86UR5 1692 aaKnown RBP24.78■■□□□ 1.56
SHKBP1-219ENST00000599575 ABCC3O15438 1527 aa24.77■■□□□ 1.56
SHKBP1-219ENST00000599575 UNC13BO14795 1591 aa24.77■■□□□ 1.56
SHKBP1-219ENST00000599575 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.77■■□□□ 1.56
SHKBP1-219ENST00000599575 SETD5Q9C0A6 1442 aa24.77■■□□□ 1.56
SHKBP1-219ENST00000599575 HRCP23327 699 aa24.75■■□□□ 1.55
SHKBP1-219ENST00000599575 ARHGAP31Q2M1Z3 1444 aa24.75■■□□□ 1.55
SHKBP1-219ENST00000599575 NPATQ14207 1427 aa24.73■■□□□ 1.55
SHKBP1-219ENST00000599575 NUP155O75694 1391 aa24.73■■□□□ 1.55
SHKBP1-219ENST00000599575 AEBP2Q6ZN18 517 aaPredicted RBP24.73■■□□□ 1.55
SHKBP1-219ENST00000599575 CLTCQ00610 1675 aaKnown RBP24.72■■□□□ 1.55
SHKBP1-219ENST00000599575 PZPP20742 1482 aa24.71■■□□□ 1.55
SHKBP1-219ENST00000599575 IQGAP3Q86VI3 1631 aa24.68■■□□□ 1.54
SHKBP1-219ENST00000599575 RPRD2Q5VT52 1461 aaKnown RBP24.67■■□□□ 1.54
SHKBP1-219ENST00000599575 C3P01024 1663 aa24.66■■□□□ 1.54
SHKBP1-219ENST00000599575 CEBPAP49715 358 aaPredicted RBP24.66■■□□□ 1.54
SHKBP1-219ENST00000599575 RAB3GAP2Q9H2M9 1393 aa24.65■■□□□ 1.54
SHKBP1-219ENST00000599575 CAMSAP1Q5T5Y3 1602 aa24.64■■□□□ 1.54
SHKBP1-219ENST00000599575 EFCAB6Q5THR3 1501 aa24.64■■□□□ 1.53
SHKBP1-219ENST00000599575 TRIM52Q96A61 297 aa24.63■■□□□ 1.53
SHKBP1-219ENST00000599575 TET3O43151 1660 aa24.62■■□□□ 1.53
SHKBP1-219ENST00000599575 CEP152O94986 1710 aa24.61■■□□□ 1.53
SHKBP1-219ENST00000599575 SPATA31D1Q6ZQQ2 1576 aa24.58■■□□□ 1.52
SHKBP1-219ENST00000599575 SETD1BQ9UPS6 1966 aaKnown RBP24.58■■□□□ 1.52
SHKBP1-219ENST00000599575 ERVK-7P63135 1459 aa24.58■■□□□ 1.52
SHKBP1-219ENST00000599575 TNRQ92752 1358 aa24.57■■□□□ 1.52
SHKBP1-219ENST00000599575 PLPPR3Q6T4P5 718 aa24.57■■□□□ 1.52
SHKBP1-219ENST00000599575 FBXO31Q5XUX0 539 aaPredicted RBP24.56■■□□□ 1.52
SHKBP1-219ENST00000599575 SLC4A1APQ9BWU0 796 aaKnown RBP24.56■■□□□ 1.52
SHKBP1-219ENST00000599575 UHRF1BP1Q6BDS2 1440 aa24.55■■□□□ 1.52
SHKBP1-219ENST00000599575 NOS1P29475 1434 aa24.54■■□□□ 1.52
SHKBP1-219ENST00000599575 NLRP1Q9C000 1473 aa24.54■■□□□ 1.52
SHKBP1-219ENST00000599575 SLC52A1Q9NWF4 448 aa24.52■■□□□ 1.52
SHKBP1-219ENST00000599575 MPHOSPH9Q99550 1183 aa24.51■■□□□ 1.51
SHKBP1-219ENST00000599575 PREX1Q8TCU6 1659 aa24.5■■□□□ 1.51
SHKBP1-219ENST00000599575 PKD2Q13563 968 aa24.49■■□□□ 1.51
SHKBP1-219ENST00000599575 E9PCH4 1651 aa24.47■■□□□ 1.51
SHKBP1-219ENST00000599575 PTPRTO14522 1441 aa24.47■■□□□ 1.51
SHKBP1-219ENST00000599575 A2ML1A8K2U0 1454 aa24.46■■□□□ 1.51
SHKBP1-219ENST00000599575 LMTK3Q96Q04 1460 aa24.46■■□□□ 1.51
SHKBP1-219ENST00000599575 MYO3AQ8NEV4 1616 aa24.44■■□□□ 1.5
SHKBP1-219ENST00000599575 CEP170BQ9Y4F5 1589 aaPredicted RBP24.42■■□□□ 1.5
SHKBP1-219ENST00000599575 ZNF142P52746 1687 aaPredicted RBP24.41■■□□□ 1.5
SHKBP1-219ENST00000599575 THEMISQ8N1K5 641 aaPredicted RBP24.41■■□□□ 1.5
SHKBP1-219ENST00000599575 SYNMO15061 1565 aa24.41■■□□□ 1.5
SHKBP1-219ENST00000599575 IDI1Q13907 227 aa24.39■■□□□ 1.49
SHKBP1-219ENST00000599575 TRPM2O94759 1503 aa24.39■■□□□ 1.49
SHKBP1-219ENST00000599575 PCGF6Q9BYE7 350 aa24.38■■□□□ 1.49
SHKBP1-219ENST00000599575 UGGT1Q9NYU2 1555 aa24.37■■□□□ 1.49
SHKBP1-219ENST00000599575 KDM5AP29375 1690 aaKnown RBP24.37■■□□□ 1.49
SHKBP1-219ENST00000599575 PIK3C2BO00750 1634 aa24.35■■□□□ 1.49
SHKBP1-219ENST00000599575 SPHKAPQ2M3C7 1700 aa24.35■■□□□ 1.49
SHKBP1-219ENST00000599575 PLA2R1Q13018 1463 aa24.34■■□□□ 1.49
SHKBP1-219ENST00000599575 STAG3Q9UJ98 1225 aa24.34■■□□□ 1.49
SHKBP1-219ENST00000599575 CFAP65Q6ZU64 1925 aaKnown RBP24.32■■□□□ 1.48
SHKBP1-219ENST00000599575 CCDC144AA2RUR9 1427 aa24.3■■□□□ 1.48
SHKBP1-219ENST00000599575 ADGRB3O60242 1522 aa24.3■■□□□ 1.48
SHKBP1-219ENST00000599575 FOXD1Q16676 465 aa24.29■■□□□ 1.48
SHKBP1-219ENST00000599575 HDGFP51858 240 aaKnown RBP24.28■■□□□ 1.48
SHKBP1-219ENST00000599575 HSPA2P54652 639 aa24.28■■□□□ 1.48
SHKBP1-219ENST00000599575 ANKRD30BQ9BXX2 1392 aa24.28■■□□□ 1.48
SHKBP1-219ENST00000599575 UBR1Q8IWV7 1749 aa24.27■■□□□ 1.48
SHKBP1-219ENST00000599575 DMRT2Q9Y5R5 561 aa24.26■■□□□ 1.47
SHKBP1-219ENST00000599575 TMEM2Q9UHN6 1383 aa24.26■■□□□ 1.47
SHKBP1-219ENST00000599575 SLIT1O75093 1534 aa24.25■■□□□ 1.47
SHKBP1-219ENST00000599575 ANKLE2Q86XL3 938 aa24.25■■□□□ 1.47
SHKBP1-219ENST00000599575 ARHGAP23Q9P227 1491 aa24.25■■□□□ 1.47
SHKBP1-219ENST00000599575 TMEM131LA2VDJ0 1609 aa24.24■■□□□ 1.47
SHKBP1-219ENST00000599575 EID1Q9Y6B2 187 aa24.23■■□□□ 1.47
SHKBP1-219ENST00000599575 CLTCL1P53675 1640 aa24.23■■□□□ 1.47
SHKBP1-219ENST00000599575 NEURL4Q96JN8 1562 aa24.22■■□□□ 1.47
SHKBP1-219ENST00000599575 DHX57Q6P158 1386 aaKnown RBP24.21■■□□□ 1.47
SHKBP1-219ENST00000599575 CHGAP10645 457 aaKnown RBP24.21■■□□□ 1.47
SHKBP1-219ENST00000599575 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.21■■□□□ 1.47
SHKBP1-219ENST00000599575 RPGRIP1LQ68CZ1 1315 aa24.19■■□□□ 1.46
SHKBP1-219ENST00000599575 MED14O60244 1454 aa24.17■■□□□ 1.46
SHKBP1-219ENST00000599575 SCAF11Q99590 1463 aaKnown RBP24.17■■□□□ 1.46
SHKBP1-219ENST00000599575 TXNDC2Q86VQ3 553 aa24.16■■□□□ 1.46
SHKBP1-219ENST00000599575 ZFYVE9O95405 1425 aa24.16■■□□□ 1.46
SHKBP1-219ENST00000599575 SPATA31E1Q6ZUB1 1445 aa24.15■■□□□ 1.46
SHKBP1-219ENST00000599575 KIF1BO60333 1816 aa24.14■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms