RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 LMTK3Q96Q04 1460 aa29.93■■■□□ 2.38
SHKBP1-214ENST00000597396 ERBINQ96RT1 1412 aa29.89■■■□□ 2.38
SHKBP1-214ENST00000597396 CLTCQ00610 1675 aaKnown RBP29.89■■■□□ 2.38
SHKBP1-214ENST00000597396 RNF17Q9BXT8 1623 aaKnown RBP29.89■■■□□ 2.37
SHKBP1-214ENST00000597396 CNTLNQ9NXG0 1405 aa29.87■■■□□ 2.37
SHKBP1-214ENST00000597396 MROH2AA6NES4 1674 aa29.86■■■□□ 2.37
SHKBP1-214ENST00000597396 ROCK1Q13464 1354 aa29.86■■■□□ 2.37
SHKBP1-214ENST00000597396 PPP6R1Q9UPN7 881 aa29.84■■■□□ 2.37
SHKBP1-214ENST00000597396 C3P01024 1663 aa29.84■■■□□ 2.37
SHKBP1-214ENST00000597396 HSPA2P54652 639 aa29.82■■■□□ 2.36
SHKBP1-214ENST00000597396 FAM135AQ9P2D6 1515 aa29.81■■■□□ 2.36
SHKBP1-214ENST00000597396 ANKRD50Q9ULJ7 1429 aa29.79■■■□□ 2.36
SHKBP1-214ENST00000597396 KDM5DQ9BY66 1539 aa29.79■■■□□ 2.36
SHKBP1-214ENST00000597396 MROH1Q8NDA8 1641 aa29.78■■■□□ 2.36
SHKBP1-214ENST00000597396 DEPDC5O75140 1603 aa29.78■■■□□ 2.36
SHKBP1-214ENST00000597396 ZC3H13Q5T200 1668 aaKnown RBP29.77■■■□□ 2.36
SHKBP1-214ENST00000597396 CEP152O94986 1710 aa29.76■■■□□ 2.36
SHKBP1-214ENST00000597396 CEBPAP49715 358 aaPredicted RBP29.76■■■□□ 2.35
SHKBP1-214ENST00000597396 WASHC2CQ9Y4E1 1318 aa29.74■■■□□ 2.35
SHKBP1-214ENST00000597396 PRDM15P57071 1507 aaPredicted RBP29.74■■■□□ 2.35
SHKBP1-214ENST00000597396 ZMYM3Q14202 1370 aa29.73■■■□□ 2.35
SHKBP1-214ENST00000597396 GCC2Q8IWJ2 1684 aa29.72■■■□□ 2.35
SHKBP1-214ENST00000597396 SETD1BQ9UPS6 1966 aaKnown RBP29.72■■■□□ 2.35
SHKBP1-214ENST00000597396 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.71■■■□□ 2.35
SHKBP1-214ENST00000597396 ABCC3O15438 1527 aa29.71■■■□□ 2.35
SHKBP1-214ENST00000597396 KANK1Q14678 1352 aa29.69■■■□□ 2.34
SHKBP1-214ENST00000597396 FBXO41Q8TF61 875 aa29.69■■■□□ 2.34
SHKBP1-214ENST00000597396 CAMSAP1Q5T5Y3 1602 aa29.67■■■□□ 2.34
SHKBP1-214ENST00000597396 UNC13BO14795 1591 aa29.65■■■□□ 2.34
SHKBP1-214ENST00000597396 PREX1Q8TCU6 1659 aa29.65■■■□□ 2.34
SHKBP1-214ENST00000597396 CFAP65Q6ZU64 1925 aaKnown RBP29.65■■■□□ 2.34
SHKBP1-214ENST00000597396 NAIPQ13075 1403 aa29.62■■■□□ 2.33
SHKBP1-214ENST00000597396 VWDEQ8N2E2 1590 aa29.61■■■□□ 2.33
SHKBP1-214ENST00000597396 PZPP20742 1482 aa29.61■■■□□ 2.33
SHKBP1-214ENST00000597396 HFM1A2PYH4 1435 aa29.6■■■□□ 2.33
SHKBP1-214ENST00000597396 NPATQ14207 1427 aa29.6■■■□□ 2.33
SHKBP1-214ENST00000597396 UHRF1BP1Q6BDS2 1440 aa29.56■■■□□ 2.32
SHKBP1-214ENST00000597396 LMTK2Q8IWU2 1503 aa29.55■■■□□ 2.32
SHKBP1-214ENST00000597396 IQGAP3Q86VI3 1631 aa29.53■■■□□ 2.32
SHKBP1-214ENST00000597396 TET3O43151 1660 aa29.53■■■□□ 2.32
SHKBP1-214ENST00000597396 MYO3AQ8NEV4 1616 aa29.52■■■□□ 2.32
SHKBP1-214ENST00000597396 FBXO31Q5XUX0 539 aaPredicted RBP29.51■■■□□ 2.31
SHKBP1-214ENST00000597396 EFCAB6Q5THR3 1501 aa29.5■■■□□ 2.31
SHKBP1-214ENST00000597396 ARHGAP31Q2M1Z3 1444 aa29.5■■■□□ 2.31
SHKBP1-214ENST00000597396 NUP155O75694 1391 aa29.5■■■□□ 2.31
SHKBP1-214ENST00000597396 TNRQ92752 1358 aa29.48■■■□□ 2.31
SHKBP1-214ENST00000597396 ERVK-7P63135 1459 aa29.47■■■□□ 2.31
SHKBP1-214ENST00000597396 SPATA31D1Q6ZQQ2 1576 aa29.47■■■□□ 2.31
SHKBP1-214ENST00000597396 ZNF142P52746 1687 aaPredicted RBP29.46■■■□□ 2.31
SHKBP1-214ENST00000597396 CERKQ8TCT0 537 aa29.43■■■□□ 2.3
SHKBP1-214ENST00000597396 DMRT2Q9Y5R5 561 aa29.43■■■□□ 2.3
SHKBP1-214ENST00000597396 E9PCH4 1651 aa29.42■■■□□ 2.3
SHKBP1-214ENST00000597396 CEP170BQ9Y4F5 1589 aaPredicted RBP29.42■■■□□ 2.3
SHKBP1-214ENST00000597396 TRIM52Q96A61 297 aa29.41■■■□□ 2.3
SHKBP1-214ENST00000597396 SETD5Q9C0A6 1442 aa29.41■■■□□ 2.3
SHKBP1-214ENST00000597396 RPRD2Q5VT52 1461 aaKnown RBP29.39■■■□□ 2.3
SHKBP1-214ENST00000597396 STRCQ7RTU9 1775 aa29.39■■■□□ 2.29
SHKBP1-214ENST00000597396 A2ML1A8K2U0 1454 aa29.36■■■□□ 2.29
SHKBP1-214ENST00000597396 NLRP1Q9C000 1473 aa29.36■■■□□ 2.29
SHKBP1-214ENST00000597396 SYNMO15061 1565 aa29.32■■■□□ 2.28
SHKBP1-214ENST00000597396 NOS1P29475 1434 aa29.31■■■□□ 2.28
SHKBP1-214ENST00000597396 RAB3GAP2Q9H2M9 1393 aa29.3■■■□□ 2.28
SHKBP1-214ENST00000597396 ACIN1Q9UKV3 1341 aaKnown RBP29.29■■■□□ 2.28
SHKBP1-214ENST00000597396 PTPRTO14522 1441 aa29.28■■■□□ 2.28
SHKBP1-214ENST00000597396 UGGT1Q9NYU2 1555 aa29.28■■■□□ 2.28
SHKBP1-214ENST00000597396 SPHKAPQ2M3C7 1700 aa29.28■■■□□ 2.28
SHKBP1-214ENST00000597396 PIK3C2BO00750 1634 aa29.27■■■□□ 2.28
SHKBP1-214ENST00000597396 SLC4A1APQ9BWU0 796 aaKnown RBP29.26■■■□□ 2.27
SHKBP1-214ENST00000597396 UBR1Q8IWV7 1749 aa29.25■■■□□ 2.27
SHKBP1-214ENST00000597396 PKD2Q13563 968 aa29.21■■■□□ 2.27
SHKBP1-214ENST00000597396 TRIM26Q12899 539 aaPredicted RBP29.2■■■□□ 2.26
SHKBP1-214ENST00000597396 THEMISQ8N1K5 641 aaPredicted RBP29.2■■■□□ 2.26
SHKBP1-214ENST00000597396 SLC52A1Q9NWF4 448 aa29.2■■■□□ 2.26
SHKBP1-214ENST00000597396 PLA2R1Q13018 1463 aa29.2■■■□□ 2.26
SHKBP1-214ENST00000597396 KDM5AP29375 1690 aaKnown RBP29.19■■■□□ 2.26
SHKBP1-214ENST00000597396 IDI1Q13907 227 aa29.19■■■□□ 2.26
SHKBP1-214ENST00000597396 STAG3Q9UJ98 1225 aa29.19■■■□□ 2.26
SHKBP1-214ENST00000597396 POLR1AO95602 1720 aaPredicted RBP29.18■■■□□ 2.26
SHKBP1-214ENST00000597396 MYO5BQ9ULV0 1848 aa29.17■■■□□ 2.26
SHKBP1-214ENST00000597396 ADGRB3O60242 1522 aa29.15■■■□□ 2.26
SHKBP1-214ENST00000597396 MPHOSPH9Q99550 1183 aa29.15■■■□□ 2.26
SHKBP1-214ENST00000597396 NCKAP5LQ9HCH0 1330 aa29.15■■■□□ 2.26
SHKBP1-214ENST00000597396 HRCP23327 699 aa29.13■■■□□ 2.25
SHKBP1-214ENST00000597396 TRPM2O94759 1503 aa29.12■■■□□ 2.25
SHKBP1-214ENST00000597396 TMEM131LA2VDJ0 1609 aa29.09■■■□□ 2.25
SHKBP1-214ENST00000597396 CLTCL1P53675 1640 aa29.09■■■□□ 2.25
SHKBP1-214ENST00000597396 KIF1BO60333 1816 aa29.08■■■□□ 2.25
SHKBP1-214ENST00000597396 CHGAP10645 457 aaKnown RBP29.08■■■□□ 2.25
SHKBP1-214ENST00000597396 LTBP4Q8N2S1 1624 aa29.08■■■□□ 2.25
SHKBP1-214ENST00000597396 FOXD1Q16676 465 aa29.07■■■□□ 2.24
SHKBP1-214ENST00000597396 ANKLE2Q86XL3 938 aa29.07■■■□□ 2.24
SHKBP1-214ENST00000597396 SLIT1O75093 1534 aa29.06■■■□□ 2.24
SHKBP1-214ENST00000597396 ARHGAP23Q9P227 1491 aa29.04■■■□□ 2.24
SHKBP1-214ENST00000597396 NEURL4Q96JN8 1562 aa29.03■■■□□ 2.24
SHKBP1-214ENST00000597396 TMEM2Q9UHN6 1383 aa29.02■■■□□ 2.24
SHKBP1-214ENST00000597396 SCAF11Q99590 1463 aaKnown RBP29■■■□□ 2.23
SHKBP1-214ENST00000597396 EID1Q9Y6B2 187 aa29■■■□□ 2.23
SHKBP1-214ENST00000597396 ZNF335Q9H4Z2 1342 aaPredicted RBP28.99■■■□□ 2.23
SHKBP1-214ENST00000597396 IQGAP1P46940 1657 aa28.99■■■□□ 2.23
SHKBP1-214ENST00000597396 TXNDC2Q86VQ3 553 aa28.98■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms